Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01443 and MPMX20_01444 are separated by 354 nucleotides MPMX20_01444 and MPMX20_01445 are separated by 95 nucleotides MPMX20_01445 and MPMX20_01446 are separated by 283 nucleotides MPMX20_01446 and MPMX20_01447 are separated by 183 nucleotides
MPMX20_01443: MPMX20_01443 - Threonine/homoserine exporter RhtA, at 1,506,402 to 1,507,289
_01443
MPMX20_01444: MPMX20_01444 - Outer membrane protein X, at 1,507,644 to 1,508,162
_01444
MPMX20_01445: MPMX20_01445 - Phosphoethanolamine transferase OpgE, at 1,508,258 to 1,509,841
_01445
MPMX20_01446: MPMX20_01446 - Small protein MntS, at 1,510,125 to 1,510,256
_01446
MPMX20_01447: MPMX20_01447 - Transcriptional regulator MntR, at 1,510,440 to 1,510,913
_01447
Position (kb)
1508
1509
1510 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1507.275 kb on + strand at 1507.275 kb on + strand at 1507.275 kb on + strand at 1507.283 kb on - strand at 1507.283 kb on - strand at 1507.283 kb on - strand at 1507.332 kb on + strand at 1507.435 kb on + strand at 1507.457 kb on + strand at 1507.480 kb on - strand at 1507.630 kb on + strand at 1507.630 kb on + strand at 1507.630 kb on + strand at 1507.630 kb on + strand at 1507.638 kb on - strand at 1507.638 kb on - strand at 1507.638 kb on - strand at 1507.638 kb on - strand at 1507.688 kb on - strand at 1507.772 kb on + strand, within MPMX20_01444 at 1507.887 kb on + strand, within MPMX20_01444 at 1507.887 kb on + strand, within MPMX20_01444 at 1507.895 kb on - strand, within MPMX20_01444 at 1507.900 kb on - strand, within MPMX20_01444 at 1507.906 kb on + strand, within MPMX20_01444 at 1507.919 kb on - strand, within MPMX20_01444 at 1508.011 kb on - strand, within MPMX20_01444 at 1508.019 kb on - strand, within MPMX20_01444 at 1508.057 kb on - strand, within MPMX20_01444 at 1508.100 kb on - strand, within MPMX20_01444 at 1508.237 kb on - strand at 1508.239 kb on + strand at 1508.239 kb on + strand at 1508.247 kb on - strand at 1508.247 kb on - strand at 1508.247 kb on - strand at 1508.340 kb on + strand at 1508.354 kb on - strand at 1508.354 kb on - strand at 1508.420 kb on + strand, within MPMX20_01445 at 1508.507 kb on + strand, within MPMX20_01445 at 1508.537 kb on + strand, within MPMX20_01445 at 1508.545 kb on + strand, within MPMX20_01445 at 1508.545 kb on - strand, within MPMX20_01445 at 1508.647 kb on - strand, within MPMX20_01445 at 1508.687 kb on - strand, within MPMX20_01445 at 1508.688 kb on + strand, within MPMX20_01445 at 1508.688 kb on + strand, within MPMX20_01445 at 1508.743 kb on + strand, within MPMX20_01445 at 1508.743 kb on + strand, within MPMX20_01445 at 1508.751 kb on - strand, within MPMX20_01445 at 1508.751 kb on - strand, within MPMX20_01445 at 1508.939 kb on - strand, within MPMX20_01445 at 1508.960 kb on + strand, within MPMX20_01445 at 1508.960 kb on + strand, within MPMX20_01445 at 1509.034 kb on + strand, within MPMX20_01445 at 1509.042 kb on - strand, within MPMX20_01445 at 1509.055 kb on + strand, within MPMX20_01445 at 1509.096 kb on + strand, within MPMX20_01445 at 1509.118 kb on - strand, within MPMX20_01445 at 1509.133 kb on - strand, within MPMX20_01445 at 1509.174 kb on + strand, within MPMX20_01445 at 1509.192 kb on - strand, within MPMX20_01445 at 1509.200 kb on - strand, within MPMX20_01445 at 1509.222 kb on + strand, within MPMX20_01445 at 1509.285 kb on - strand, within MPMX20_01445 at 1509.317 kb on - strand, within MPMX20_01445 at 1509.357 kb on - strand, within MPMX20_01445 at 1509.362 kb on - strand, within MPMX20_01445 at 1509.362 kb on - strand, within MPMX20_01445 at 1509.394 kb on - strand, within MPMX20_01445 at 1509.416 kb on - strand, within MPMX20_01445 at 1509.493 kb on - strand, within MPMX20_01445 at 1509.544 kb on + strand, within MPMX20_01445 at 1509.552 kb on - strand, within MPMX20_01445 at 1509.552 kb on - strand, within MPMX20_01445 at 1509.576 kb on + strand, within MPMX20_01445 at 1509.584 kb on - strand, within MPMX20_01445 at 1509.594 kb on + strand, within MPMX20_01445 at 1509.602 kb on - strand, within MPMX20_01445 at 1509.602 kb on - strand, within MPMX20_01445 at 1509.602 kb on - strand, within MPMX20_01445 at 1509.607 kb on - strand, within MPMX20_01445 at 1509.701 kb on + strand at 1509.709 kb on - strand at 1509.714 kb on + strand at 1509.714 kb on + strand at 1509.719 kb on + strand at 1509.722 kb on - strand at 1509.722 kb on - strand at 1509.722 kb on - strand at 1509.724 kb on + strand at 1509.724 kb on + strand at 1509.732 kb on - strand at 1509.732 kb on - strand at 1509.732 kb on - strand at 1509.781 kb on - strand at 1509.790 kb on + strand at 1509.798 kb on - strand at 1509.811 kb on - strand at 1509.817 kb on - strand at 1509.844 kb on - strand at 1509.870 kb on + strand at 1509.889 kb on - strand at 1509.890 kb on + strand at 1509.891 kb on + strand at 1509.891 kb on + strand at 1509.891 kb on + strand at 1509.898 kb on - strand at 1509.899 kb on - strand at 1509.901 kb on + strand at 1509.901 kb on + strand at 1509.909 kb on - strand at 1509.930 kb on - strand at 1509.962 kb on - strand at 1509.975 kb on - strand at 1510.022 kb on - strand at 1510.062 kb on + strand at 1510.116 kb on - strand at 1510.121 kb on - strand at 1510.128 kb on + strand at 1510.136 kb on - strand at 1510.149 kb on + strand, within MPMX20_01446 at 1510.151 kb on - strand, within MPMX20_01446 at 1510.185 kb on + strand, within MPMX20_01446 at 1510.295 kb on - strand at 1510.332 kb on - strand at 1510.379 kb on + strand at 1510.435 kb on + strand at 1510.435 kb on + strand at 1510.513 kb on - strand, within MPMX20_01447 at 1510.541 kb on - strand, within MPMX20_01447 at 1510.548 kb on - strand, within MPMX20_01447 at 1510.548 kb on - strand, within MPMX20_01447 at 1510.561 kb on + strand, within MPMX20_01447 at 1510.678 kb on + strand, within MPMX20_01447 at 1510.678 kb on + strand, within MPMX20_01447 at 1510.678 kb on + strand, within MPMX20_01447 at 1510.686 kb on - strand, within MPMX20_01447 at 1510.740 kb on - strand, within MPMX20_01447 at 1510.751 kb on - strand, within MPMX20_01447
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 1,507,275 + -1.9 1,507,275 + -0.4 1,507,275 + -0.9 1,507,283 - -0.7 1,507,283 - -0.3 1,507,283 - +0.3 1,507,332 + -2.1 1,507,435 + +0.7 1,507,457 + +0.0 1,507,480 - +0.4 1,507,630 + -0.9 1,507,630 + +0.8 1,507,630 + +1.6 1,507,630 + -0.1 1,507,638 - +0.3 1,507,638 - +0.3 1,507,638 - +0.8 1,507,638 - +0.2 1,507,688 - -1.7 1,507,772 + MPMX20_01444 0.25 -0.6 1,507,887 + MPMX20_01444 0.47 +0.1 1,507,887 + MPMX20_01444 0.47 -2.1 1,507,895 - MPMX20_01444 0.48 +1.6 1,507,900 - MPMX20_01444 0.49 +0.1 1,507,906 + MPMX20_01444 0.50 +3.9 1,507,919 - MPMX20_01444 0.53 -2.8 1,508,011 - MPMX20_01444 0.71 +0.1 1,508,019 - MPMX20_01444 0.72 -0.8 1,508,057 - MPMX20_01444 0.80 -1.3 1,508,100 - MPMX20_01444 0.88 +0.2 1,508,237 - -2.5 1,508,239 + -0.0 1,508,239 + -0.2 1,508,247 - +0.4 1,508,247 - -1.7 1,508,247 - -1.6 1,508,340 + +0.1 1,508,354 - -0.2 1,508,354 - -0.3 1,508,420 + MPMX20_01445 0.10 -0.7 1,508,507 + MPMX20_01445 0.16 +4.3 1,508,537 + MPMX20_01445 0.18 -0.7 1,508,545 + MPMX20_01445 0.18 -3.2 1,508,545 - MPMX20_01445 0.18 +1.3 1,508,647 - MPMX20_01445 0.25 -0.8 1,508,687 - MPMX20_01445 0.27 +1.5 1,508,688 + MPMX20_01445 0.27 -0.3 1,508,688 + MPMX20_01445 0.27 -1.5 1,508,743 + MPMX20_01445 0.31 +0.5 1,508,743 + MPMX20_01445 0.31 +0.7 1,508,751 - MPMX20_01445 0.31 -0.8 1,508,751 - MPMX20_01445 0.31 +1.4 1,508,939 - MPMX20_01445 0.43 -0.2 1,508,960 + MPMX20_01445 0.44 +1.1 1,508,960 + MPMX20_01445 0.44 -1.1 1,509,034 + MPMX20_01445 0.49 +2.0 1,509,042 - MPMX20_01445 0.49 +0.5 1,509,055 + MPMX20_01445 0.50 +0.4 1,509,096 + MPMX20_01445 0.53 +0.5 1,509,118 - MPMX20_01445 0.54 -0.6 1,509,133 - MPMX20_01445 0.55 +1.2 1,509,174 + MPMX20_01445 0.58 +0.1 1,509,192 - MPMX20_01445 0.59 +1.4 1,509,200 - MPMX20_01445 0.59 +1.9 1,509,222 + MPMX20_01445 0.61 -0.5 1,509,285 - MPMX20_01445 0.65 +0.7 1,509,317 - MPMX20_01445 0.67 +0.6 1,509,357 - MPMX20_01445 0.69 +0.7 1,509,362 - MPMX20_01445 0.70 +2.9 1,509,362 - MPMX20_01445 0.70 -1.1 1,509,394 - MPMX20_01445 0.72 +2.3 1,509,416 - MPMX20_01445 0.73 +0.1 1,509,493 - MPMX20_01445 0.78 -1.4 1,509,544 + MPMX20_01445 0.81 +0.2 1,509,552 - MPMX20_01445 0.82 +2.8 1,509,552 - MPMX20_01445 0.82 -1.8 1,509,576 + MPMX20_01445 0.83 +0.6 1,509,584 - MPMX20_01445 0.84 +1.1 1,509,594 + MPMX20_01445 0.84 -1.4 1,509,602 - MPMX20_01445 0.85 +1.6 1,509,602 - MPMX20_01445 0.85 +0.4 1,509,602 - MPMX20_01445 0.85 +1.9 1,509,607 - MPMX20_01445 0.85 +0.2 1,509,701 + +0.4 1,509,709 - -1.0 1,509,714 + +0.1 1,509,714 + +1.3 1,509,719 + +1.1 1,509,722 - +0.8 1,509,722 - +0.4 1,509,722 - -0.6 1,509,724 + +0.2 1,509,724 + +0.1 1,509,732 - -0.3 1,509,732 - +0.1 1,509,732 - +0.7 1,509,781 - -2.4 1,509,790 + +0.8 1,509,798 - -1.5 1,509,811 - -1.3 1,509,817 - +0.0 1,509,844 - +0.7 1,509,870 + +1.1 1,509,889 - +0.1 1,509,890 + +0.9 1,509,891 + -0.3 1,509,891 + -0.9 1,509,891 + +0.2 1,509,898 - +1.1 1,509,899 - +0.6 1,509,901 + -1.9 1,509,901 + -2.6 1,509,909 - +0.7 1,509,930 - +0.1 1,509,962 - -0.5 1,509,975 - +0.7 1,510,022 - -0.9 1,510,062 + -0.3 1,510,116 - -0.9 1,510,121 - +0.7 1,510,128 + +0.2 1,510,136 - -0.4 1,510,149 + MPMX20_01446 0.18 -0.7 1,510,151 - MPMX20_01446 0.20 +0.1 1,510,185 + MPMX20_01446 0.45 -0.3 1,510,295 - -0.3 1,510,332 - +1.7 1,510,379 + -1.2 1,510,435 + -0.4 1,510,435 + -0.1 1,510,513 - MPMX20_01447 0.15 -0.2 1,510,541 - MPMX20_01447 0.21 -0.4 1,510,548 - MPMX20_01447 0.23 +1.7 1,510,548 - MPMX20_01447 0.23 -0.1 1,510,561 + MPMX20_01447 0.26 -2.3 1,510,678 + MPMX20_01447 0.50 +1.6 1,510,678 + MPMX20_01447 0.50 +0.8 1,510,678 + MPMX20_01447 0.50 +1.0 1,510,686 - MPMX20_01447 0.52 -1.5 1,510,740 - MPMX20_01447 0.63 -0.2 1,510,751 - MPMX20_01447 0.66 -0.2
Or see this region's nucleotide sequence