Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01401

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01400 and MPMX20_01401 are separated by 42 nucleotidesMPMX20_01401 and MPMX20_01402 are separated by 72 nucleotides MPMX20_01400: MPMX20_01400 - Histidine ammonia-lyase, at 1,463,150 to 1,464,670 _01400 MPMX20_01401: MPMX20_01401 - hypothetical protein, at 1,464,713 to 1,465,189 _01401 MPMX20_01402: MPMX20_01402 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 1,465,262 to 1,466,569 _01402 Position (kb) 1464 1465 1466Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1463.721 kb on + strand, within MPMX20_01400at 1463.731 kb on + strand, within MPMX20_01400at 1463.739 kb on - strand, within MPMX20_01400at 1463.749 kb on - strand, within MPMX20_01400at 1463.776 kb on + strand, within MPMX20_01400at 1463.807 kb on + strand, within MPMX20_01400at 1463.809 kb on + strand, within MPMX20_01400at 1463.879 kb on - strand, within MPMX20_01400at 1463.978 kb on + strand, within MPMX20_01400at 1464.016 kb on + strand, within MPMX20_01400at 1464.016 kb on - strand, within MPMX20_01400at 1464.021 kb on - strand, within MPMX20_01400at 1464.021 kb on - strand, within MPMX20_01400at 1464.024 kb on - strand, within MPMX20_01400at 1464.027 kb on + strand, within MPMX20_01400at 1464.080 kb on - strand, within MPMX20_01400at 1464.204 kb on + strand, within MPMX20_01400at 1464.212 kb on - strand, within MPMX20_01400at 1464.307 kb on + strand, within MPMX20_01400at 1464.350 kb on + strand, within MPMX20_01400at 1464.350 kb on + strand, within MPMX20_01400at 1464.350 kb on + strand, within MPMX20_01400at 1464.396 kb on - strand, within MPMX20_01400at 1464.495 kb on + strand, within MPMX20_01400at 1464.495 kb on + strand, within MPMX20_01400at 1464.503 kb on - strand, within MPMX20_01400at 1464.503 kb on - strand, within MPMX20_01400at 1464.503 kb on - strand, within MPMX20_01400at 1464.512 kb on + strand, within MPMX20_01400at 1464.527 kb on - strandat 1464.527 kb on - strandat 1464.530 kb on + strandat 1464.642 kb on - strandat 1464.697 kb on - strandat 1464.792 kb on + strand, within MPMX20_01401at 1464.879 kb on + strand, within MPMX20_01401at 1464.886 kb on - strand, within MPMX20_01401at 1464.908 kb on + strand, within MPMX20_01401at 1464.908 kb on + strand, within MPMX20_01401at 1464.908 kb on + strand, within MPMX20_01401at 1464.916 kb on - strand, within MPMX20_01401at 1464.916 kb on - strand, within MPMX20_01401at 1464.929 kb on - strand, within MPMX20_01401at 1464.929 kb on - strand, within MPMX20_01401at 1464.940 kb on + strand, within MPMX20_01401at 1464.954 kb on - strand, within MPMX20_01401at 1464.989 kb on - strand, within MPMX20_01401at 1464.996 kb on + strand, within MPMX20_01401at 1464.999 kb on - strand, within MPMX20_01401at 1465.004 kb on - strand, within MPMX20_01401at 1465.004 kb on - strand, within MPMX20_01401at 1465.009 kb on + strand, within MPMX20_01401at 1465.012 kb on - strand, within MPMX20_01401at 1465.017 kb on - strand, within MPMX20_01401at 1465.033 kb on + strand, within MPMX20_01401at 1465.043 kb on + strand, within MPMX20_01401at 1465.048 kb on + strand, within MPMX20_01401at 1465.100 kb on + strand, within MPMX20_01401at 1465.240 kb on + strandat 1465.247 kb on + strandat 1465.259 kb on + strandat 1465.259 kb on + strandat 1465.259 kb on + strandat 1465.267 kb on - strandat 1465.267 kb on - strandat 1465.291 kb on - strandat 1465.301 kb on - strandat 1465.316 kb on - strandat 1465.390 kb on - strandat 1465.557 kb on - strand, within MPMX20_01402at 1465.594 kb on + strand, within MPMX20_01402at 1465.606 kb on + strand, within MPMX20_01402at 1465.612 kb on - strand, within MPMX20_01402at 1465.693 kb on + strand, within MPMX20_01402at 1465.716 kb on - strand, within MPMX20_01402at 1465.775 kb on + strand, within MPMX20_01402at 1465.783 kb on - strand, within MPMX20_01402at 1465.907 kb on - strand, within MPMX20_01402at 1465.961 kb on - strand, within MPMX20_01402at 1465.964 kb on - strand, within MPMX20_01402at 1465.964 kb on - strand, within MPMX20_01402at 1465.964 kb on - strand, within MPMX20_01402at 1465.964 kb on - strand, within MPMX20_01402at 1465.990 kb on - strand, within MPMX20_01402at 1466.036 kb on - strand, within MPMX20_01402at 1466.056 kb on + strand, within MPMX20_01402at 1466.081 kb on - strand, within MPMX20_01402at 1466.098 kb on - strand, within MPMX20_01402at 1466.104 kb on - strand, within MPMX20_01402at 1466.161 kb on - strand, within MPMX20_01402at 1466.180 kb on - strand, within MPMX20_01402

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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1,463,721 + MPMX20_01400 0.38 +3.9
1,463,731 + MPMX20_01400 0.38 -0.1
1,463,739 - MPMX20_01400 0.39 -0.2
1,463,749 - MPMX20_01400 0.39 +0.0
1,463,776 + MPMX20_01400 0.41 +0.3
1,463,807 + MPMX20_01400 0.43 -2.0
1,463,809 + MPMX20_01400 0.43 -2.4
1,463,879 - MPMX20_01400 0.48 -0.3
1,463,978 + MPMX20_01400 0.54 -2.2
1,464,016 + MPMX20_01400 0.57 -0.8
1,464,016 - MPMX20_01400 0.57 +0.4
1,464,021 - MPMX20_01400 0.57 +1.1
1,464,021 - MPMX20_01400 0.57 +0.1
1,464,024 - MPMX20_01400 0.57 -0.1
1,464,027 + MPMX20_01400 0.58 -0.3
1,464,080 - MPMX20_01400 0.61 -0.7
1,464,204 + MPMX20_01400 0.69 -1.1
1,464,212 - MPMX20_01400 0.70 +0.2
1,464,307 + MPMX20_01400 0.76 -1.3
1,464,350 + MPMX20_01400 0.79 -0.9
1,464,350 + MPMX20_01400 0.79 +1.0
1,464,350 + MPMX20_01400 0.79 +1.6
1,464,396 - MPMX20_01400 0.82 -2.2
1,464,495 + MPMX20_01400 0.88 +0.9
1,464,495 + MPMX20_01400 0.88 -1.3
1,464,503 - MPMX20_01400 0.89 -1.6
1,464,503 - MPMX20_01400 0.89 +1.7
1,464,503 - MPMX20_01400 0.89 +1.0
1,464,512 + MPMX20_01400 0.90 +1.4
1,464,527 - +0.3
1,464,527 - +0.8
1,464,530 + -1.0
1,464,642 - -0.0
1,464,697 - -0.8
1,464,792 + MPMX20_01401 0.17 +1.8
1,464,879 + MPMX20_01401 0.35 -1.3
1,464,886 - MPMX20_01401 0.36 +0.2
1,464,908 + MPMX20_01401 0.41 +3.3
1,464,908 + MPMX20_01401 0.41 -0.6
1,464,908 + MPMX20_01401 0.41 -2.4
1,464,916 - MPMX20_01401 0.43 -0.2
1,464,916 - MPMX20_01401 0.43 -0.0
1,464,929 - MPMX20_01401 0.45 +0.0
1,464,929 - MPMX20_01401 0.45 -0.6
1,464,940 + MPMX20_01401 0.48 -0.5
1,464,954 - MPMX20_01401 0.51 -1.3
1,464,989 - MPMX20_01401 0.58 -0.8
1,464,996 + MPMX20_01401 0.59 +1.5
1,464,999 - MPMX20_01401 0.60 +0.8
1,465,004 - MPMX20_01401 0.61 -0.5
1,465,004 - MPMX20_01401 0.61 +0.3
1,465,009 + MPMX20_01401 0.62 -0.1
1,465,012 - MPMX20_01401 0.63 -0.2
1,465,017 - MPMX20_01401 0.64 -0.6
1,465,033 + MPMX20_01401 0.67 -0.3
1,465,043 + MPMX20_01401 0.69 +0.4
1,465,048 + MPMX20_01401 0.70 -0.2
1,465,100 + MPMX20_01401 0.81 -0.0
1,465,240 + +0.3
1,465,247 + -1.5
1,465,259 + -0.8
1,465,259 + -1.4
1,465,259 + +2.3
1,465,267 - -0.6
1,465,267 - -2.5
1,465,291 - +1.7
1,465,301 - +1.0
1,465,316 - +1.3
1,465,390 - +0.7
1,465,557 - MPMX20_01402 0.23 -0.7
1,465,594 + MPMX20_01402 0.25 +0.6
1,465,606 + MPMX20_01402 0.26 +0.4
1,465,612 - MPMX20_01402 0.27 -0.4
1,465,693 + MPMX20_01402 0.33 -0.0
1,465,716 - MPMX20_01402 0.35 -0.1
1,465,775 + MPMX20_01402 0.39 +0.3
1,465,783 - MPMX20_01402 0.40 -2.2
1,465,907 - MPMX20_01402 0.49 -0.5
1,465,961 - MPMX20_01402 0.53 +1.7
1,465,964 - MPMX20_01402 0.54 -0.1
1,465,964 - MPMX20_01402 0.54 -0.0
1,465,964 - MPMX20_01402 0.54 +0.8
1,465,964 - MPMX20_01402 0.54 +0.5
1,465,990 - MPMX20_01402 0.56 -0.3
1,466,036 - MPMX20_01402 0.59 -1.0
1,466,056 + MPMX20_01402 0.61 -0.0
1,466,081 - MPMX20_01402 0.63 -0.8
1,466,098 - MPMX20_01402 0.64 +1.0
1,466,104 - MPMX20_01402 0.64 -1.5
1,466,161 - MPMX20_01402 0.69 +1.3
1,466,180 - MPMX20_01402 0.70 -0.0

Or see this region's nucleotide sequence