Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01067 and MPMX20_01068 are separated by 1 nucleotides MPMX20_01068 and MPMX20_01069 are separated by 12 nucleotides MPMX20_01069 and MPMX20_01070 are separated by 50 nucleotides MPMX20_01070 and MPMX20_01071 are separated by 151 nucleotides
MPMX20_01067: MPMX20_01067 - Mechanosensitive channel MscK, at 1,123,529 to 1,126,876
_01067
MPMX20_01068: MPMX20_01068 - hypothetical protein, at 1,126,878 to 1,127,063
_01068
MPMX20_01069: MPMX20_01069 - Primosomal replication protein N'', at 1,127,076 to 1,127,603
_01069
MPMX20_01070: MPMX20_01070 - Inner membrane protein YbaN, at 1,127,654 to 1,128,031
_01070
MPMX20_01071: MPMX20_01071 - Adenine phosphoribosyltransferase, at 1,128,183 to 1,128,734
_01071
Position (kb)
1127
1128 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 1126.079 kb on + strand, within MPMX20_01067 at 1126.087 kb on - strand, within MPMX20_01067 at 1126.087 kb on - strand, within MPMX20_01067 at 1126.107 kb on + strand, within MPMX20_01067 at 1126.115 kb on - strand, within MPMX20_01067 at 1126.116 kb on + strand, within MPMX20_01067 at 1126.124 kb on - strand, within MPMX20_01067 at 1126.150 kb on + strand, within MPMX20_01067 at 1126.205 kb on - strand, within MPMX20_01067 at 1126.515 kb on + strand, within MPMX20_01067 at 1126.541 kb on + strand, within MPMX20_01067 at 1126.547 kb on + strand at 1126.559 kb on + strand at 1126.618 kb on + strand at 1126.629 kb on + strand at 1126.629 kb on + strand at 1126.634 kb on + strand at 1126.637 kb on - strand at 1126.637 kb on - strand at 1126.651 kb on - strand at 1126.658 kb on - strand at 1126.700 kb on - strand at 1126.711 kb on + strand at 1126.713 kb on + strand at 1126.719 kb on - strand at 1126.727 kb on + strand at 1126.787 kb on - strand at 1126.789 kb on + strand at 1126.909 kb on + strand, within MPMX20_01068 at 1126.909 kb on + strand, within MPMX20_01068 at 1126.917 kb on - strand, within MPMX20_01068 at 1126.932 kb on - strand, within MPMX20_01068 at 1126.932 kb on - strand, within MPMX20_01068 at 1127.007 kb on - strand, within MPMX20_01068 at 1127.029 kb on + strand, within MPMX20_01068 at 1127.082 kb on + strand at 1127.082 kb on + strand at 1127.082 kb on + strand at 1127.142 kb on + strand, within MPMX20_01069 at 1127.142 kb on + strand, within MPMX20_01069 at 1127.150 kb on - strand, within MPMX20_01069 at 1127.150 kb on - strand, within MPMX20_01069 at 1127.351 kb on - strand, within MPMX20_01069 at 1127.358 kb on - strand, within MPMX20_01069 at 1127.380 kb on + strand, within MPMX20_01069 at 1127.437 kb on - strand, within MPMX20_01069 at 1127.555 kb on + strand at 1127.696 kb on + strand, within MPMX20_01070 at 1127.696 kb on + strand, within MPMX20_01070 at 1127.717 kb on + strand, within MPMX20_01070 at 1127.759 kb on + strand, within MPMX20_01070 at 1127.760 kb on - strand, within MPMX20_01070 at 1127.794 kb on + strand, within MPMX20_01070 at 1127.868 kb on + strand, within MPMX20_01070 at 1127.876 kb on - strand, within MPMX20_01070 at 1127.876 kb on - strand, within MPMX20_01070 at 1127.971 kb on - strand, within MPMX20_01070 at 1128.035 kb on - strand at 1128.093 kb on + strand at 1128.093 kb on + strand at 1128.104 kb on + strand at 1128.150 kb on + strand at 1128.152 kb on + strand at 1128.160 kb on - strand at 1128.160 kb on - strand at 1128.185 kb on + strand at 1128.203 kb on + strand at 1128.234 kb on + strand at 1128.234 kb on + strand at 1128.239 kb on + strand, within MPMX20_01071 at 1128.242 kb on - strand, within MPMX20_01071 at 1128.244 kb on + strand, within MPMX20_01071 at 1128.250 kb on + strand, within MPMX20_01071 at 1128.280 kb on - strand, within MPMX20_01071 at 1128.313 kb on + strand, within MPMX20_01071 at 1128.313 kb on + strand, within MPMX20_01071 at 1128.321 kb on - strand, within MPMX20_01071 at 1128.321 kb on - strand, within MPMX20_01071 at 1128.321 kb on - strand, within MPMX20_01071 at 1128.367 kb on + strand, within MPMX20_01071 at 1128.368 kb on - strand, within MPMX20_01071 at 1128.410 kb on + strand, within MPMX20_01071 at 1128.476 kb on + strand, within MPMX20_01071 at 1128.535 kb on - strand, within MPMX20_01071
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 1,126,079 + MPMX20_01067 0.76 +0.3 1,126,087 - MPMX20_01067 0.76 -0.8 1,126,087 - MPMX20_01067 0.76 +1.2 1,126,107 + MPMX20_01067 0.77 -0.7 1,126,115 - MPMX20_01067 0.77 -0.0 1,126,116 + MPMX20_01067 0.77 -0.4 1,126,124 - MPMX20_01067 0.78 -3.8 1,126,150 + MPMX20_01067 0.78 -1.2 1,126,205 - MPMX20_01067 0.80 -2.5 1,126,515 + MPMX20_01067 0.89 -1.0 1,126,541 + MPMX20_01067 0.90 +2.0 1,126,547 + -0.9 1,126,559 + +0.8 1,126,618 + -1.3 1,126,629 + -0.7 1,126,629 + -0.1 1,126,634 + -0.6 1,126,637 - +0.6 1,126,637 - +1.2 1,126,651 - +0.9 1,126,658 - +1.0 1,126,700 - +1.1 1,126,711 + -1.1 1,126,713 + -0.1 1,126,719 - -0.0 1,126,727 + -0.9 1,126,787 - +1.2 1,126,789 + -0.1 1,126,909 + MPMX20_01068 0.17 +1.6 1,126,909 + MPMX20_01068 0.17 -0.1 1,126,917 - MPMX20_01068 0.21 -3.2 1,126,932 - MPMX20_01068 0.29 -2.2 1,126,932 - MPMX20_01068 0.29 -2.2 1,127,007 - MPMX20_01068 0.69 -2.3 1,127,029 + MPMX20_01068 0.81 +0.5 1,127,082 + -0.1 1,127,082 + +0.4 1,127,082 + -0.2 1,127,142 + MPMX20_01069 0.12 -0.4 1,127,142 + MPMX20_01069 0.12 +0.8 1,127,150 - MPMX20_01069 0.14 +0.5 1,127,150 - MPMX20_01069 0.14 +0.6 1,127,351 - MPMX20_01069 0.52 -2.3 1,127,358 - MPMX20_01069 0.53 -0.9 1,127,380 + MPMX20_01069 0.58 +0.1 1,127,437 - MPMX20_01069 0.68 -0.6 1,127,555 + +0.6 1,127,696 + MPMX20_01070 0.11 +2.2 1,127,696 + MPMX20_01070 0.11 -1.9 1,127,717 + MPMX20_01070 0.17 -2.4 1,127,759 + MPMX20_01070 0.28 -0.2 1,127,760 - MPMX20_01070 0.28 -2.0 1,127,794 + MPMX20_01070 0.37 -3.9 1,127,868 + MPMX20_01070 0.57 +0.9 1,127,876 - MPMX20_01070 0.59 +0.5 1,127,876 - MPMX20_01070 0.59 -1.0 1,127,971 - MPMX20_01070 0.84 -1.0 1,128,035 - +8.0 1,128,093 + -1.1 1,128,093 + -1.1 1,128,104 + +0.0 1,128,150 + -1.3 1,128,152 + -1.5 1,128,160 - +2.9 1,128,160 - +0.3 1,128,185 + -0.6 1,128,203 + +0.9 1,128,234 + -1.2 1,128,234 + +1.8 1,128,239 + MPMX20_01071 0.10 +0.1 1,128,242 - MPMX20_01071 0.11 +0.8 1,128,244 + MPMX20_01071 0.11 +2.2 1,128,250 + MPMX20_01071 0.12 +0.7 1,128,280 - MPMX20_01071 0.18 -2.8 1,128,313 + MPMX20_01071 0.24 +3.2 1,128,313 + MPMX20_01071 0.24 -0.2 1,128,321 - MPMX20_01071 0.25 -1.2 1,128,321 - MPMX20_01071 0.25 -0.1 1,128,321 - MPMX20_01071 0.25 +1.8 1,128,367 + MPMX20_01071 0.33 -0.6 1,128,368 - MPMX20_01071 0.34 -0.0 1,128,410 + MPMX20_01071 0.41 +1.5 1,128,476 + MPMX20_01071 0.53 +0.2 1,128,535 - MPMX20_01071 0.64 -0.4
Or see this region's nucleotide sequence