Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00527 and MPMX20_00528 are separated by 19 nucleotides MPMX20_00528 and MPMX20_00529 are separated by 77 nucleotides MPMX20_00529 and MPMX20_00530 are separated by 277 nucleotides
MPMX20_00527: MPMX20_00527 - 6-phosphogluconolactonase, at 542,769 to 543,902
_00527
MPMX20_00528: MPMX20_00528 - putative licABCH operon regulator, at 543,922 to 545,832
_00528
MPMX20_00529: MPMX20_00529 - Antitoxin RelB, at 545,910 to 546,152
_00529
MPMX20_00530: MPMX20_00530 - Anaerobic ribonucleoside-triphosphate reductase-activating protein, at 546,430 to 546,894
_00530
Position (kb) 543
544
545
546 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 542.930 kb on + strand, within MPMX20_00527 at 542.930 kb on + strand, within MPMX20_00527 at 542.938 kb on - strand, within MPMX20_00527 at 542.938 kb on - strand, within MPMX20_00527 at 542.942 kb on + strand, within MPMX20_00527 at 542.950 kb on - strand, within MPMX20_00527 at 542.950 kb on - strand, within MPMX20_00527 at 542.957 kb on + strand, within MPMX20_00527 at 543.001 kb on + strand, within MPMX20_00527 at 543.001 kb on + strand, within MPMX20_00527 at 543.009 kb on - strand, within MPMX20_00527 at 543.027 kb on - strand, within MPMX20_00527 at 543.029 kb on + strand, within MPMX20_00527 at 543.043 kb on + strand, within MPMX20_00527 at 543.043 kb on + strand, within MPMX20_00527 at 543.053 kb on + strand, within MPMX20_00527 at 543.066 kb on - strand, within MPMX20_00527 at 543.082 kb on + strand, within MPMX20_00527 at 543.090 kb on - strand, within MPMX20_00527 at 543.097 kb on + strand, within MPMX20_00527 at 543.117 kb on + strand, within MPMX20_00527 at 543.118 kb on + strand, within MPMX20_00527 at 543.125 kb on - strand, within MPMX20_00527 at 543.125 kb on - strand, within MPMX20_00527 at 543.195 kb on - strand, within MPMX20_00527 at 543.218 kb on - strand, within MPMX20_00527 at 543.307 kb on - strand, within MPMX20_00527 at 543.353 kb on + strand, within MPMX20_00527 at 543.366 kb on - strand, within MPMX20_00527 at 543.394 kb on + strand, within MPMX20_00527 at 543.521 kb on + strand, within MPMX20_00527 at 543.534 kb on + strand, within MPMX20_00527 at 543.542 kb on - strand, within MPMX20_00527 at 543.576 kb on - strand, within MPMX20_00527 at 543.583 kb on - strand, within MPMX20_00527 at 543.716 kb on - strand, within MPMX20_00527 at 543.733 kb on + strand, within MPMX20_00527 at 543.741 kb on - strand, within MPMX20_00527 at 543.756 kb on - strand, within MPMX20_00527 at 543.756 kb on - strand, within MPMX20_00527 at 543.775 kb on + strand, within MPMX20_00527 at 543.789 kb on + strand at 543.833 kb on - strand at 543.844 kb on + strand at 543.847 kb on - strand at 543.847 kb on - strand at 543.852 kb on - strand at 543.854 kb on + strand at 543.864 kb on - strand at 543.896 kb on + strand at 543.897 kb on + strand at 543.912 kb on + strand at 543.912 kb on + strand at 543.912 kb on + strand at 543.912 kb on + strand at 543.920 kb on - strand at 543.920 kb on - strand at 543.920 kb on - strand at 543.920 kb on - strand at 543.920 kb on - strand at 544.014 kb on - strand at 544.080 kb on + strand at 544.141 kb on - strand, within MPMX20_00528 at 544.151 kb on + strand, within MPMX20_00528 at 544.151 kb on + strand, within MPMX20_00528 at 544.151 kb on + strand, within MPMX20_00528 at 544.151 kb on - strand, within MPMX20_00528 at 544.160 kb on + strand, within MPMX20_00528 at 544.177 kb on + strand, within MPMX20_00528 at 544.259 kb on - strand, within MPMX20_00528 at 544.261 kb on + strand, within MPMX20_00528 at 544.364 kb on + strand, within MPMX20_00528 at 544.372 kb on - strand, within MPMX20_00528 at 544.432 kb on + strand, within MPMX20_00528 at 544.441 kb on + strand, within MPMX20_00528 at 544.567 kb on + strand, within MPMX20_00528 at 544.567 kb on + strand, within MPMX20_00528 at 544.575 kb on - strand, within MPMX20_00528 at 544.577 kb on + strand, within MPMX20_00528 at 544.607 kb on + strand, within MPMX20_00528 at 544.658 kb on - strand, within MPMX20_00528 at 544.767 kb on - strand, within MPMX20_00528 at 544.781 kb on - strand, within MPMX20_00528 at 544.904 kb on - strand, within MPMX20_00528 at 544.939 kb on + strand, within MPMX20_00528 at 544.966 kb on - strand, within MPMX20_00528 at 544.986 kb on + strand, within MPMX20_00528 at 544.987 kb on + strand, within MPMX20_00528 at 544.994 kb on - strand, within MPMX20_00528 at 544.995 kb on - strand, within MPMX20_00528 at 544.995 kb on - strand, within MPMX20_00528 at 545.005 kb on + strand, within MPMX20_00528 at 545.005 kb on + strand, within MPMX20_00528 at 545.179 kb on + strand, within MPMX20_00528 at 545.187 kb on - strand, within MPMX20_00528 at 545.187 kb on - strand, within MPMX20_00528 at 545.210 kb on - strand, within MPMX20_00528 at 545.219 kb on + strand, within MPMX20_00528 at 545.219 kb on + strand, within MPMX20_00528 at 545.219 kb on + strand, within MPMX20_00528 at 545.227 kb on - strand, within MPMX20_00528 at 545.227 kb on - strand, within MPMX20_00528 at 545.227 kb on - strand, within MPMX20_00528 at 545.281 kb on + strand, within MPMX20_00528 at 545.286 kb on + strand, within MPMX20_00528 at 545.360 kb on + strand, within MPMX20_00528 at 545.382 kb on - strand, within MPMX20_00528 at 545.383 kb on - strand, within MPMX20_00528 at 545.462 kb on + strand, within MPMX20_00528 at 545.481 kb on + strand, within MPMX20_00528 at 545.481 kb on + strand, within MPMX20_00528 at 545.481 kb on + strand, within MPMX20_00528 at 545.484 kb on - strand, within MPMX20_00528 at 545.489 kb on - strand, within MPMX20_00528 at 545.489 kb on - strand, within MPMX20_00528 at 545.489 kb on - strand, within MPMX20_00528 at 545.544 kb on + strand, within MPMX20_00528 at 545.567 kb on + strand, within MPMX20_00528 at 545.585 kb on + strand, within MPMX20_00528 at 545.593 kb on - strand, within MPMX20_00528 at 545.593 kb on - strand, within MPMX20_00528 at 545.593 kb on - strand, within MPMX20_00528 at 545.613 kb on + strand, within MPMX20_00528 at 545.621 kb on - strand, within MPMX20_00528 at 545.621 kb on - strand, within MPMX20_00528 at 545.634 kb on + strand, within MPMX20_00528 at 545.637 kb on + strand, within MPMX20_00528 at 545.645 kb on - strand at 545.759 kb on + strand at 545.764 kb on + strand at 545.767 kb on - strand at 545.962 kb on - strand, within MPMX20_00529 at 545.962 kb on - strand, within MPMX20_00529 at 545.962 kb on - strand, within MPMX20_00529 at 546.058 kb on + strand, within MPMX20_00529 at 546.058 kb on + strand, within MPMX20_00529 at 546.060 kb on + strand, within MPMX20_00529 at 546.060 kb on + strand, within MPMX20_00529 at 546.070 kb on + strand, within MPMX20_00529 at 546.083 kb on + strand, within MPMX20_00529 at 546.083 kb on + strand, within MPMX20_00529 at 546.083 kb on + strand, within MPMX20_00529 at 546.089 kb on - strand, within MPMX20_00529 at 546.091 kb on - strand, within MPMX20_00529 at 546.091 kb on - strand, within MPMX20_00529 at 546.091 kb on - strand, within MPMX20_00529 at 546.091 kb on - strand, within MPMX20_00529 at 546.091 kb on - strand, within MPMX20_00529 at 546.093 kb on + strand, within MPMX20_00529 at 546.101 kb on - strand, within MPMX20_00529 at 546.101 kb on - strand, within MPMX20_00529 at 546.124 kb on - strand, within MPMX20_00529 at 546.138 kb on - strand at 546.144 kb on - strand at 546.173 kb on + strand at 546.181 kb on + strand at 546.185 kb on + strand at 546.185 kb on + strand at 546.189 kb on - strand at 546.193 kb on - strand at 546.193 kb on - strand at 546.195 kb on + strand at 546.203 kb on - strand at 546.203 kb on - strand at 546.245 kb on - strand at 546.249 kb on + strand at 546.249 kb on + strand at 546.249 kb on + strand at 546.257 kb on - strand at 546.257 kb on - strand at 546.263 kb on - strand at 546.342 kb on + strand at 546.345 kb on - strand at 546.347 kb on + strand at 546.350 kb on - strand at 546.350 kb on - strand at 546.350 kb on - strand at 546.356 kb on - strand at 546.362 kb on + strand at 546.370 kb on - strand at 546.376 kb on + strand at 546.428 kb on - strand at 546.447 kb on + strand at 546.475 kb on - strand at 546.475 kb on - strand at 546.475 kb on - strand at 546.485 kb on - strand, within MPMX20_00530 at 546.494 kb on - strand, within MPMX20_00530 at 546.511 kb on - strand, within MPMX20_00530 at 546.524 kb on - strand, within MPMX20_00530 at 546.532 kb on + strand, within MPMX20_00530 at 546.544 kb on + strand, within MPMX20_00530 at 546.547 kb on - strand, within MPMX20_00530 at 546.552 kb on - strand, within MPMX20_00530 at 546.552 kb on - strand, within MPMX20_00530 at 546.557 kb on - strand, within MPMX20_00530 at 546.562 kb on - strand, within MPMX20_00530 at 546.562 kb on - strand, within MPMX20_00530 at 546.590 kb on + strand, within MPMX20_00530 at 546.633 kb on + strand, within MPMX20_00530 at 546.674 kb on + strand, within MPMX20_00530 at 546.692 kb on - strand, within MPMX20_00530 at 546.771 kb on - strand, within MPMX20_00530 at 546.818 kb on - strand, within MPMX20_00530 at 546.820 kb on + strand, within MPMX20_00530
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 542,930 + MPMX20_00527 0.14 -2.6 542,930 + MPMX20_00527 0.14 -0.2 542,938 - MPMX20_00527 0.15 +0.6 542,938 - MPMX20_00527 0.15 +2.3 542,942 + MPMX20_00527 0.15 +0.5 542,950 - MPMX20_00527 0.16 +1.3 542,950 - MPMX20_00527 0.16 -0.4 542,957 + MPMX20_00527 0.17 +0.6 543,001 + MPMX20_00527 0.20 +0.8 543,001 + MPMX20_00527 0.20 +0.8 543,009 - MPMX20_00527 0.21 -0.6 543,027 - MPMX20_00527 0.23 -0.7 543,029 + MPMX20_00527 0.23 +0.7 543,043 + MPMX20_00527 0.24 -0.1 543,043 + MPMX20_00527 0.24 -2.6 543,053 + MPMX20_00527 0.25 +1.2 543,066 - MPMX20_00527 0.26 +0.4 543,082 + MPMX20_00527 0.28 -0.1 543,090 - MPMX20_00527 0.28 +3.2 543,097 + MPMX20_00527 0.29 -0.3 543,117 + MPMX20_00527 0.31 +0.5 543,118 + MPMX20_00527 0.31 +1.0 543,125 - MPMX20_00527 0.31 -0.4 543,125 - MPMX20_00527 0.31 +0.2 543,195 - MPMX20_00527 0.38 +2.9 543,218 - MPMX20_00527 0.40 -1.0 543,307 - MPMX20_00527 0.47 +0.2 543,353 + MPMX20_00527 0.51 +2.0 543,366 - MPMX20_00527 0.53 +2.2 543,394 + MPMX20_00527 0.55 +1.3 543,521 + MPMX20_00527 0.66 -1.3 543,534 + MPMX20_00527 0.67 +0.2 543,542 - MPMX20_00527 0.68 -0.1 543,576 - MPMX20_00527 0.71 +1.2 543,583 - MPMX20_00527 0.72 -1.8 543,716 - MPMX20_00527 0.84 -3.8 543,733 + MPMX20_00527 0.85 +1.5 543,741 - MPMX20_00527 0.86 +0.0 543,756 - MPMX20_00527 0.87 -0.8 543,756 - MPMX20_00527 0.87 +0.6 543,775 + MPMX20_00527 0.89 -0.3 543,789 + -1.1 543,833 - +3.9 543,844 + -1.8 543,847 - -1.1 543,847 - -0.5 543,852 - +0.7 543,854 + +1.2 543,864 - -1.9 543,896 + -0.3 543,897 + +1.2 543,912 + +1.2 543,912 + +4.4 543,912 + -1.1 543,912 + -0.9 543,920 - -0.1 543,920 - +0.2 543,920 - -1.8 543,920 - -0.2 543,920 - -1.3 544,014 - +0.4 544,080 + -0.7 544,141 - MPMX20_00528 0.11 +0.3 544,151 + MPMX20_00528 0.12 +1.8 544,151 + MPMX20_00528 0.12 -2.3 544,151 + MPMX20_00528 0.12 -0.5 544,151 - MPMX20_00528 0.12 -0.6 544,160 + MPMX20_00528 0.12 -1.7 544,177 + MPMX20_00528 0.13 -0.5 544,259 - MPMX20_00528 0.18 -3.3 544,261 + MPMX20_00528 0.18 +0.9 544,364 + MPMX20_00528 0.23 +1.5 544,372 - MPMX20_00528 0.24 +0.5 544,432 + MPMX20_00528 0.27 -2.5 544,441 + MPMX20_00528 0.27 -0.4 544,567 + MPMX20_00528 0.34 -0.4 544,567 + MPMX20_00528 0.34 +0.3 544,575 - MPMX20_00528 0.34 -2.5 544,577 + MPMX20_00528 0.34 -0.8 544,607 + MPMX20_00528 0.36 -1.5 544,658 - MPMX20_00528 0.39 +0.6 544,767 - MPMX20_00528 0.44 -1.4 544,781 - MPMX20_00528 0.45 -3.1 544,904 - MPMX20_00528 0.51 +0.7 544,939 + MPMX20_00528 0.53 -0.5 544,966 - MPMX20_00528 0.55 -0.6 544,986 + MPMX20_00528 0.56 +0.6 544,987 + MPMX20_00528 0.56 +0.2 544,994 - MPMX20_00528 0.56 -1.0 544,995 - MPMX20_00528 0.56 +0.3 544,995 - MPMX20_00528 0.56 -1.4 545,005 + MPMX20_00528 0.57 -2.2 545,005 + MPMX20_00528 0.57 +0.5 545,179 + MPMX20_00528 0.66 +3.4 545,187 - MPMX20_00528 0.66 +1.2 545,187 - MPMX20_00528 0.66 +0.5 545,210 - MPMX20_00528 0.67 +1.0 545,219 + MPMX20_00528 0.68 +0.0 545,219 + MPMX20_00528 0.68 +1.2 545,219 + MPMX20_00528 0.68 -2.1 545,227 - MPMX20_00528 0.68 -2.2 545,227 - MPMX20_00528 0.68 +0.8 545,227 - MPMX20_00528 0.68 -1.5 545,281 + MPMX20_00528 0.71 +0.6 545,286 + MPMX20_00528 0.71 -0.7 545,360 + MPMX20_00528 0.75 +0.0 545,382 - MPMX20_00528 0.76 -0.6 545,383 - MPMX20_00528 0.76 -0.2 545,462 + MPMX20_00528 0.81 +0.4 545,481 + MPMX20_00528 0.82 -1.9 545,481 + MPMX20_00528 0.82 -3.1 545,481 + MPMX20_00528 0.82 -1.2 545,484 - MPMX20_00528 0.82 -0.2 545,489 - MPMX20_00528 0.82 +0.2 545,489 - MPMX20_00528 0.82 +2.6 545,489 - MPMX20_00528 0.82 -1.5 545,544 + MPMX20_00528 0.85 -1.1 545,567 + MPMX20_00528 0.86 +0.6 545,585 + MPMX20_00528 0.87 -0.8 545,593 - MPMX20_00528 0.87 -1.7 545,593 - MPMX20_00528 0.87 -1.5 545,593 - MPMX20_00528 0.87 +0.2 545,613 + MPMX20_00528 0.88 -1.0 545,621 - MPMX20_00528 0.89 -0.8 545,621 - MPMX20_00528 0.89 +0.8 545,634 + MPMX20_00528 0.90 +0.1 545,637 + MPMX20_00528 0.90 -0.5 545,645 - +0.2 545,759 + -0.2 545,764 + -0.5 545,767 - -0.8 545,962 - MPMX20_00529 0.21 +0.2 545,962 - MPMX20_00529 0.21 +1.2 545,962 - MPMX20_00529 0.21 +0.2 546,058 + MPMX20_00529 0.61 -0.4 546,058 + MPMX20_00529 0.61 +1.5 546,060 + MPMX20_00529 0.62 +0.2 546,060 + MPMX20_00529 0.62 -1.4 546,070 + MPMX20_00529 0.66 -1.1 546,083 + MPMX20_00529 0.71 +0.3 546,083 + MPMX20_00529 0.71 -0.4 546,083 + MPMX20_00529 0.71 +0.1 546,089 - MPMX20_00529 0.74 +0.2 546,091 - MPMX20_00529 0.74 -0.9 546,091 - MPMX20_00529 0.74 -1.4 546,091 - MPMX20_00529 0.74 +1.7 546,091 - MPMX20_00529 0.74 -1.7 546,091 - MPMX20_00529 0.74 +0.7 546,093 + MPMX20_00529 0.75 -1.6 546,101 - MPMX20_00529 0.79 +2.4 546,101 - MPMX20_00529 0.79 -0.7 546,124 - MPMX20_00529 0.88 -0.5 546,138 - -2.4 546,144 - -1.0 546,173 + +0.5 546,181 + +0.2 546,185 + -1.2 546,185 + -0.1 546,189 - -0.5 546,193 - +0.8 546,193 - +0.2 546,195 + +0.2 546,203 - -0.8 546,203 - +1.6 546,245 - -0.4 546,249 + -0.7 546,249 + -0.8 546,249 + +0.6 546,257 - +0.1 546,257 - -1.1 546,263 - -0.2 546,342 + -0.0 546,345 - -1.1 546,347 + +0.2 546,350 - -0.1 546,350 - +0.4 546,350 - -0.5 546,356 - +0.1 546,362 + -0.4 546,370 - +0.5 546,376 + -0.3 546,428 - +1.2 546,447 + -2.0 546,475 - -0.4 546,475 - -0.2 546,475 - +1.5 546,485 - MPMX20_00530 0.12 -1.0 546,494 - MPMX20_00530 0.14 -0.0 546,511 - MPMX20_00530 0.17 -1.7 546,524 - MPMX20_00530 0.20 -0.8 546,532 + MPMX20_00530 0.22 -0.6 546,544 + MPMX20_00530 0.25 -2.6 546,547 - MPMX20_00530 0.25 -1.9 546,552 - MPMX20_00530 0.26 -0.4 546,552 - MPMX20_00530 0.26 -0.1 546,557 - MPMX20_00530 0.27 -1.1 546,562 - MPMX20_00530 0.28 -0.1 546,562 - MPMX20_00530 0.28 -0.2 546,590 + MPMX20_00530 0.34 +0.2 546,633 + MPMX20_00530 0.44 -0.8 546,674 + MPMX20_00530 0.52 -0.9 546,692 - MPMX20_00530 0.56 -1.3 546,771 - MPMX20_00530 0.73 +0.5 546,818 - MPMX20_00530 0.83 +0.3 546,820 + MPMX20_00530 0.84 +0.2
Or see this region's nucleotide sequence