Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04587

Experiment: M9 plate, 1:1 coculture with Rhodococcus aetherivorans MH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04586 and MPMX20_04587 are separated by 155 nucleotidesMPMX20_04587 and MPMX20_04588 are separated by 17 nucleotidesMPMX20_04588 and MPMX20_04589 are separated by 14 nucleotides MPMX20_04586: MPMX20_04586 - Sulfofructose kinase, at 4,797,106 to 4,798,002 _04586 MPMX20_04587: MPMX20_04587 - 3-sulfolactaldehyde reductase, at 4,798,158 to 4,799,048 _04587 MPMX20_04588: MPMX20_04588 - Sulfofructosephosphate aldolase, at 4,799,066 to 4,799,941 _04588 MPMX20_04589: MPMX20_04589 - Sulfoquinovose isomerase, at 4,799,956 to 4,801,197 _04589 Position (kb) 4798 4799 4800Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4797.210 kb on - strand, within MPMX20_04586at 4797.235 kb on - strand, within MPMX20_04586at 4797.369 kb on - strand, within MPMX20_04586at 4797.443 kb on - strand, within MPMX20_04586at 4797.460 kb on + strand, within MPMX20_04586at 4797.485 kb on - strand, within MPMX20_04586at 4797.524 kb on - strand, within MPMX20_04586at 4797.529 kb on - strand, within MPMX20_04586at 4797.578 kb on - strand, within MPMX20_04586at 4797.632 kb on + strand, within MPMX20_04586at 4797.641 kb on - strand, within MPMX20_04586at 4797.701 kb on - strand, within MPMX20_04586at 4797.711 kb on + strand, within MPMX20_04586at 4797.737 kb on + strand, within MPMX20_04586at 4797.778 kb on + strand, within MPMX20_04586at 4797.803 kb on - strand, within MPMX20_04586at 4797.897 kb on + strand, within MPMX20_04586at 4797.972 kb on + strandat 4798.180 kb on + strandat 4798.180 kb on + strandat 4798.180 kb on + strandat 4798.185 kb on + strandat 4798.188 kb on - strandat 4798.188 kb on - strandat 4798.236 kb on - strandat 4798.289 kb on + strand, within MPMX20_04587at 4798.306 kb on + strand, within MPMX20_04587at 4798.314 kb on - strand, within MPMX20_04587at 4798.318 kb on + strand, within MPMX20_04587at 4798.318 kb on + strand, within MPMX20_04587at 4798.326 kb on - strand, within MPMX20_04587at 4798.326 kb on - strand, within MPMX20_04587at 4798.377 kb on + strand, within MPMX20_04587at 4798.407 kb on + strand, within MPMX20_04587at 4798.407 kb on + strand, within MPMX20_04587at 4798.415 kb on - strand, within MPMX20_04587at 4798.444 kb on + strand, within MPMX20_04587at 4798.455 kb on + strand, within MPMX20_04587at 4798.528 kb on + strand, within MPMX20_04587at 4798.536 kb on - strand, within MPMX20_04587at 4798.559 kb on - strand, within MPMX20_04587at 4798.560 kb on - strand, within MPMX20_04587at 4798.639 kb on - strand, within MPMX20_04587at 4798.671 kb on - strand, within MPMX20_04587at 4798.738 kb on - strand, within MPMX20_04587at 4798.764 kb on - strand, within MPMX20_04587at 4798.810 kb on + strand, within MPMX20_04587at 4798.810 kb on + strand, within MPMX20_04587at 4798.848 kb on - strand, within MPMX20_04587at 4798.886 kb on - strand, within MPMX20_04587at 4798.908 kb on - strand, within MPMX20_04587at 4798.958 kb on - strand, within MPMX20_04587at 4799.010 kb on - strandat 4799.064 kb on - strandat 4799.079 kb on + strandat 4799.109 kb on + strandat 4799.124 kb on + strandat 4799.132 kb on - strandat 4799.213 kb on - strand, within MPMX20_04588at 4799.286 kb on + strand, within MPMX20_04588at 4799.340 kb on + strand, within MPMX20_04588at 4799.371 kb on - strand, within MPMX20_04588at 4799.371 kb on - strand, within MPMX20_04588at 4799.535 kb on - strand, within MPMX20_04588at 4799.604 kb on + strand, within MPMX20_04588at 4799.628 kb on + strand, within MPMX20_04588at 4799.628 kb on + strand, within MPMX20_04588at 4799.641 kb on - strand, within MPMX20_04588at 4799.643 kb on + strand, within MPMX20_04588at 4799.761 kb on - strand, within MPMX20_04588at 4799.864 kb on + strandat 4799.971 kb on + strandat 4799.990 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Rhodococcus aetherivorans MH2
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4,797,210 - MPMX20_04586 0.12 +1.5
4,797,235 - MPMX20_04586 0.14 +1.3
4,797,369 - MPMX20_04586 0.29 -2.5
4,797,443 - MPMX20_04586 0.38 +0.4
4,797,460 + MPMX20_04586 0.39 -1.1
4,797,485 - MPMX20_04586 0.42 -0.7
4,797,524 - MPMX20_04586 0.47 -0.4
4,797,529 - MPMX20_04586 0.47 -1.9
4,797,578 - MPMX20_04586 0.53 +0.6
4,797,632 + MPMX20_04586 0.59 -1.4
4,797,641 - MPMX20_04586 0.60 -0.7
4,797,701 - MPMX20_04586 0.66 -0.5
4,797,711 + MPMX20_04586 0.67 +1.9
4,797,737 + MPMX20_04586 0.70 -2.5
4,797,778 + MPMX20_04586 0.75 -0.3
4,797,803 - MPMX20_04586 0.78 -0.3
4,797,897 + MPMX20_04586 0.88 +0.5
4,797,972 + -3.3
4,798,180 + -1.4
4,798,180 + +0.9
4,798,180 + -1.6
4,798,185 + -2.4
4,798,188 - +1.6
4,798,188 - -2.5
4,798,236 - +2.5
4,798,289 + MPMX20_04587 0.15 +0.1
4,798,306 + MPMX20_04587 0.17 -2.5
4,798,314 - MPMX20_04587 0.18 -0.7
4,798,318 + MPMX20_04587 0.18 -2.3
4,798,318 + MPMX20_04587 0.18 +0.6
4,798,326 - MPMX20_04587 0.19 -1.6
4,798,326 - MPMX20_04587 0.19 +2.1
4,798,377 + MPMX20_04587 0.25 -1.5
4,798,407 + MPMX20_04587 0.28 -1.4
4,798,407 + MPMX20_04587 0.28 -2.0
4,798,415 - MPMX20_04587 0.29 -0.7
4,798,444 + MPMX20_04587 0.32 +2.0
4,798,455 + MPMX20_04587 0.33 -3.4
4,798,528 + MPMX20_04587 0.42 +0.5
4,798,536 - MPMX20_04587 0.42 -2.3
4,798,559 - MPMX20_04587 0.45 -1.1
4,798,560 - MPMX20_04587 0.45 -1.9
4,798,639 - MPMX20_04587 0.54 -2.3
4,798,671 - MPMX20_04587 0.58 -1.7
4,798,738 - MPMX20_04587 0.65 -0.9
4,798,764 - MPMX20_04587 0.68 -0.3
4,798,810 + MPMX20_04587 0.73 +0.1
4,798,810 + MPMX20_04587 0.73 +0.1
4,798,848 - MPMX20_04587 0.77 +0.5
4,798,886 - MPMX20_04587 0.82 -0.9
4,798,908 - MPMX20_04587 0.84 -0.1
4,798,958 - MPMX20_04587 0.90 -1.0
4,799,010 - -1.8
4,799,064 - +0.1
4,799,079 + -1.5
4,799,109 + +0.6
4,799,124 + +1.7
4,799,132 - -1.1
4,799,213 - MPMX20_04588 0.17 -0.9
4,799,286 + MPMX20_04588 0.25 +2.1
4,799,340 + MPMX20_04588 0.31 -2.7
4,799,371 - MPMX20_04588 0.35 -0.1
4,799,371 - MPMX20_04588 0.35 -2.7
4,799,535 - MPMX20_04588 0.54 -2.5
4,799,604 + MPMX20_04588 0.61 -1.3
4,799,628 + MPMX20_04588 0.64 -2.1
4,799,628 + MPMX20_04588 0.64 +1.1
4,799,641 - MPMX20_04588 0.66 -3.0
4,799,643 + MPMX20_04588 0.66 +1.4
4,799,761 - MPMX20_04588 0.79 -0.9
4,799,864 + -2.3
4,799,971 + +4.0
4,799,990 + -1.8

Or see this region's nucleotide sequence