Experiment: M9 plate, 1:1 coculture with Rhodococcus aetherivorans MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04586 and MPMX20_04587 are separated by 155 nucleotides MPMX20_04587 and MPMX20_04588 are separated by 17 nucleotides MPMX20_04588 and MPMX20_04589 are separated by 14 nucleotides
MPMX20_04586: MPMX20_04586 - Sulfofructose kinase, at 4,797,106 to 4,798,002
_04586
MPMX20_04587: MPMX20_04587 - 3-sulfolactaldehyde reductase, at 4,798,158 to 4,799,048
_04587
MPMX20_04588: MPMX20_04588 - Sulfofructosephosphate aldolase, at 4,799,066 to 4,799,941
_04588
MPMX20_04589: MPMX20_04589 - Sulfoquinovose isomerase, at 4,799,956 to 4,801,197
_04589
Position (kb)
4798
4799
4800 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4797.210 kb on - strand, within MPMX20_04586 at 4797.235 kb on - strand, within MPMX20_04586 at 4797.369 kb on - strand, within MPMX20_04586 at 4797.443 kb on - strand, within MPMX20_04586 at 4797.460 kb on + strand, within MPMX20_04586 at 4797.485 kb on - strand, within MPMX20_04586 at 4797.524 kb on - strand, within MPMX20_04586 at 4797.529 kb on - strand, within MPMX20_04586 at 4797.578 kb on - strand, within MPMX20_04586 at 4797.632 kb on + strand, within MPMX20_04586 at 4797.641 kb on - strand, within MPMX20_04586 at 4797.701 kb on - strand, within MPMX20_04586 at 4797.711 kb on + strand, within MPMX20_04586 at 4797.737 kb on + strand, within MPMX20_04586 at 4797.778 kb on + strand, within MPMX20_04586 at 4797.803 kb on - strand, within MPMX20_04586 at 4797.897 kb on + strand, within MPMX20_04586 at 4797.972 kb on + strand at 4798.180 kb on + strand at 4798.180 kb on + strand at 4798.180 kb on + strand at 4798.185 kb on + strand at 4798.188 kb on - strand at 4798.188 kb on - strand at 4798.236 kb on - strand at 4798.289 kb on + strand, within MPMX20_04587 at 4798.306 kb on + strand, within MPMX20_04587 at 4798.314 kb on - strand, within MPMX20_04587 at 4798.318 kb on + strand, within MPMX20_04587 at 4798.318 kb on + strand, within MPMX20_04587 at 4798.326 kb on - strand, within MPMX20_04587 at 4798.326 kb on - strand, within MPMX20_04587 at 4798.377 kb on + strand, within MPMX20_04587 at 4798.407 kb on + strand, within MPMX20_04587 at 4798.407 kb on + strand, within MPMX20_04587 at 4798.415 kb on - strand, within MPMX20_04587 at 4798.444 kb on + strand, within MPMX20_04587 at 4798.455 kb on + strand, within MPMX20_04587 at 4798.528 kb on + strand, within MPMX20_04587 at 4798.536 kb on - strand, within MPMX20_04587 at 4798.559 kb on - strand, within MPMX20_04587 at 4798.560 kb on - strand, within MPMX20_04587 at 4798.639 kb on - strand, within MPMX20_04587 at 4798.671 kb on - strand, within MPMX20_04587 at 4798.738 kb on - strand, within MPMX20_04587 at 4798.764 kb on - strand, within MPMX20_04587 at 4798.810 kb on + strand, within MPMX20_04587 at 4798.810 kb on + strand, within MPMX20_04587 at 4798.848 kb on - strand, within MPMX20_04587 at 4798.886 kb on - strand, within MPMX20_04587 at 4798.908 kb on - strand, within MPMX20_04587 at 4798.958 kb on - strand, within MPMX20_04587 at 4799.010 kb on - strand at 4799.064 kb on - strand at 4799.079 kb on + strand at 4799.109 kb on + strand at 4799.124 kb on + strand at 4799.132 kb on - strand at 4799.213 kb on - strand, within MPMX20_04588 at 4799.286 kb on + strand, within MPMX20_04588 at 4799.340 kb on + strand, within MPMX20_04588 at 4799.371 kb on - strand, within MPMX20_04588 at 4799.371 kb on - strand, within MPMX20_04588 at 4799.535 kb on - strand, within MPMX20_04588 at 4799.604 kb on + strand, within MPMX20_04588 at 4799.628 kb on + strand, within MPMX20_04588 at 4799.628 kb on + strand, within MPMX20_04588 at 4799.641 kb on - strand, within MPMX20_04588 at 4799.643 kb on + strand, within MPMX20_04588 at 4799.761 kb on - strand, within MPMX20_04588 at 4799.864 kb on + strand at 4799.971 kb on + strand at 4799.990 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Rhodococcus aetherivorans MH2 remove 4,797,210 - MPMX20_04586 0.12 +1.5 4,797,235 - MPMX20_04586 0.14 +1.3 4,797,369 - MPMX20_04586 0.29 -2.5 4,797,443 - MPMX20_04586 0.38 +0.4 4,797,460 + MPMX20_04586 0.39 -1.1 4,797,485 - MPMX20_04586 0.42 -0.7 4,797,524 - MPMX20_04586 0.47 -0.4 4,797,529 - MPMX20_04586 0.47 -1.9 4,797,578 - MPMX20_04586 0.53 +0.6 4,797,632 + MPMX20_04586 0.59 -1.4 4,797,641 - MPMX20_04586 0.60 -0.7 4,797,701 - MPMX20_04586 0.66 -0.5 4,797,711 + MPMX20_04586 0.67 +1.9 4,797,737 + MPMX20_04586 0.70 -2.5 4,797,778 + MPMX20_04586 0.75 -0.3 4,797,803 - MPMX20_04586 0.78 -0.3 4,797,897 + MPMX20_04586 0.88 +0.5 4,797,972 + -3.3 4,798,180 + -1.4 4,798,180 + +0.9 4,798,180 + -1.6 4,798,185 + -2.4 4,798,188 - +1.6 4,798,188 - -2.5 4,798,236 - +2.5 4,798,289 + MPMX20_04587 0.15 +0.1 4,798,306 + MPMX20_04587 0.17 -2.5 4,798,314 - MPMX20_04587 0.18 -0.7 4,798,318 + MPMX20_04587 0.18 -2.3 4,798,318 + MPMX20_04587 0.18 +0.6 4,798,326 - MPMX20_04587 0.19 -1.6 4,798,326 - MPMX20_04587 0.19 +2.1 4,798,377 + MPMX20_04587 0.25 -1.5 4,798,407 + MPMX20_04587 0.28 -1.4 4,798,407 + MPMX20_04587 0.28 -2.0 4,798,415 - MPMX20_04587 0.29 -0.7 4,798,444 + MPMX20_04587 0.32 +2.0 4,798,455 + MPMX20_04587 0.33 -3.4 4,798,528 + MPMX20_04587 0.42 +0.5 4,798,536 - MPMX20_04587 0.42 -2.3 4,798,559 - MPMX20_04587 0.45 -1.1 4,798,560 - MPMX20_04587 0.45 -1.9 4,798,639 - MPMX20_04587 0.54 -2.3 4,798,671 - MPMX20_04587 0.58 -1.7 4,798,738 - MPMX20_04587 0.65 -0.9 4,798,764 - MPMX20_04587 0.68 -0.3 4,798,810 + MPMX20_04587 0.73 +0.1 4,798,810 + MPMX20_04587 0.73 +0.1 4,798,848 - MPMX20_04587 0.77 +0.5 4,798,886 - MPMX20_04587 0.82 -0.9 4,798,908 - MPMX20_04587 0.84 -0.1 4,798,958 - MPMX20_04587 0.90 -1.0 4,799,010 - -1.8 4,799,064 - +0.1 4,799,079 + -1.5 4,799,109 + +0.6 4,799,124 + +1.7 4,799,132 - -1.1 4,799,213 - MPMX20_04588 0.17 -0.9 4,799,286 + MPMX20_04588 0.25 +2.1 4,799,340 + MPMX20_04588 0.31 -2.7 4,799,371 - MPMX20_04588 0.35 -0.1 4,799,371 - MPMX20_04588 0.35 -2.7 4,799,535 - MPMX20_04588 0.54 -2.5 4,799,604 + MPMX20_04588 0.61 -1.3 4,799,628 + MPMX20_04588 0.64 -2.1 4,799,628 + MPMX20_04588 0.64 +1.1 4,799,641 - MPMX20_04588 0.66 -3.0 4,799,643 + MPMX20_04588 0.66 +1.4 4,799,761 - MPMX20_04588 0.79 -0.9 4,799,864 + -2.3 4,799,971 + +4.0 4,799,990 + -1.8
Or see this region's nucleotide sequence