Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17030 and HMPREF1058_RS17025 are separated by 25 nucleotides HMPREF1058_RS17025 and HMPREF1058_RS17020 are separated by 86 nucleotides
HMPREF1058_RS17030: HMPREF1058_RS17030 - DUF4837 family protein, at 533,681 to 534,745
_RS17030
HMPREF1058_RS17025: HMPREF1058_RS17025 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 534,771 to 535,820
_RS17025
HMPREF1058_RS17020: HMPREF1058_RS17020 - DUF4922 domain-containing protein, at 535,907 to 538,378
_RS17020
Position (kb) 534
535
536 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 534.010 kb on - strand, within HMPREF1058_RS17030 at 534.750 kb on - strand at 534.752 kb on - strand at 534.873 kb on + strand at 534.945 kb on - strand, within HMPREF1058_RS17025 at 535.019 kb on - strand, within HMPREF1058_RS17025 at 535.048 kb on - strand, within HMPREF1058_RS17025 at 535.053 kb on - strand, within HMPREF1058_RS17025 at 535.055 kb on - strand, within HMPREF1058_RS17025 at 535.095 kb on - strand, within HMPREF1058_RS17025 at 535.095 kb on - strand, within HMPREF1058_RS17025 at 535.103 kb on + strand, within HMPREF1058_RS17025 at 535.103 kb on + strand, within HMPREF1058_RS17025 at 535.103 kb on + strand, within HMPREF1058_RS17025 at 535.103 kb on + strand, within HMPREF1058_RS17025 at 535.103 kb on + strand, within HMPREF1058_RS17025 at 535.104 kb on - strand, within HMPREF1058_RS17025 at 535.146 kb on + strand, within HMPREF1058_RS17025 at 535.181 kb on + strand, within HMPREF1058_RS17025 at 535.182 kb on - strand, within HMPREF1058_RS17025 at 535.237 kb on - strand, within HMPREF1058_RS17025 at 535.368 kb on - strand, within HMPREF1058_RS17025 at 535.396 kb on + strand, within HMPREF1058_RS17025 at 535.407 kb on + strand, within HMPREF1058_RS17025 at 535.467 kb on - strand, within HMPREF1058_RS17025 at 535.527 kb on + strand, within HMPREF1058_RS17025 at 535.528 kb on - strand, within HMPREF1058_RS17025 at 535.528 kb on - strand, within HMPREF1058_RS17025 at 535.530 kb on - strand, within HMPREF1058_RS17025 at 535.708 kb on + strand, within HMPREF1058_RS17025 at 535.708 kb on + strand, within HMPREF1058_RS17025 at 535.828 kb on + strand at 535.829 kb on - strand at 535.868 kb on + strand at 535.870 kb on + strand at 535.931 kb on - strand at 535.993 kb on - strand at 535.993 kb on - strand at 536.130 kb on - strand at 536.131 kb on + strand at 536.132 kb on - strand at 536.134 kb on - strand at 536.442 kb on + strand, within HMPREF1058_RS17020 at 536.442 kb on + strand, within HMPREF1058_RS17020 at 536.462 kb on + strand, within HMPREF1058_RS17020 at 536.463 kb on - strand, within HMPREF1058_RS17020 at 536.464 kb on + strand, within HMPREF1058_RS17020 at 536.517 kb on + strand, within HMPREF1058_RS17020 at 536.518 kb on - strand, within HMPREF1058_RS17020 at 536.539 kb on - strand, within HMPREF1058_RS17020 at 536.605 kb on - strand, within HMPREF1058_RS17020 at 536.623 kb on - strand, within HMPREF1058_RS17020
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 remove 534,010 - HMPREF1058_RS17030 0.31 -0.9 534,750 - -2.9 534,752 - -3.6 534,873 + -3.2 534,945 - HMPREF1058_RS17025 0.17 -1.9 535,019 - HMPREF1058_RS17025 0.24 -2.9 535,048 - HMPREF1058_RS17025 0.26 +0.0 535,053 - HMPREF1058_RS17025 0.27 -0.4 535,055 - HMPREF1058_RS17025 0.27 -3.0 535,095 - HMPREF1058_RS17025 0.31 -0.7 535,095 - HMPREF1058_RS17025 0.31 -0.9 535,103 + HMPREF1058_RS17025 0.32 -0.9 535,103 + HMPREF1058_RS17025 0.32 -1.9 535,103 + HMPREF1058_RS17025 0.32 -2.7 535,103 + HMPREF1058_RS17025 0.32 -2.2 535,103 + HMPREF1058_RS17025 0.32 -2.9 535,104 - HMPREF1058_RS17025 0.32 +0.1 535,146 + HMPREF1058_RS17025 0.36 -1.9 535,181 + HMPREF1058_RS17025 0.39 -3.3 535,182 - HMPREF1058_RS17025 0.39 +0.1 535,237 - HMPREF1058_RS17025 0.44 -6.0 535,368 - HMPREF1058_RS17025 0.57 +0.5 535,396 + HMPREF1058_RS17025 0.60 -4.2 535,407 + HMPREF1058_RS17025 0.61 -1.4 535,467 - HMPREF1058_RS17025 0.66 -3.6 535,527 + HMPREF1058_RS17025 0.72 -4.0 535,528 - HMPREF1058_RS17025 0.72 -2.4 535,528 - HMPREF1058_RS17025 0.72 -0.3 535,530 - HMPREF1058_RS17025 0.72 -1.9 535,708 + HMPREF1058_RS17025 0.89 -3.0 535,708 + HMPREF1058_RS17025 0.89 -0.9 535,828 + -1.9 535,829 - -1.1 535,868 + -2.2 535,870 + -2.2 535,931 - -2.1 535,993 - -0.4 535,993 - -2.2 536,130 - -0.9 536,131 + -0.0 536,132 - -0.7 536,134 - -0.1 536,442 + HMPREF1058_RS17020 0.22 -2.4 536,442 + HMPREF1058_RS17020 0.22 -0.9 536,462 + HMPREF1058_RS17020 0.22 +2.4 536,463 - HMPREF1058_RS17020 0.22 -1.2 536,464 + HMPREF1058_RS17020 0.23 -1.3 536,517 + HMPREF1058_RS17020 0.25 +1.6 536,518 - HMPREF1058_RS17020 0.25 -3.2 536,539 - HMPREF1058_RS17020 0.26 +0.5 536,605 - HMPREF1058_RS17020 0.28 -1.0 536,623 - HMPREF1058_RS17020 0.29 -0.1
Or see this region's nucleotide sequence