Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10670 and HMPREF1058_RS10665 are separated by 71 nucleotides HMPREF1058_RS10665 and HMPREF1058_RS10660 are separated by 25 nucleotides HMPREF1058_RS10660 and HMPREF1058_RS10655 are separated by 108 nucleotides HMPREF1058_RS10655 and HMPREF1058_RS10650 are separated by 1 nucleotides
HMPREF1058_RS10670: HMPREF1058_RS10670 - DUF4221 family protein, at 606,605 to 607,303
_RS10670
HMPREF1058_RS10665: HMPREF1058_RS10665 - hypothetical protein, at 607,375 to 607,659
_RS10665
HMPREF1058_RS10660: HMPREF1058_RS10660 - DUF1573 domain-containing protein, at 607,685 to 608,422
_RS10660
HMPREF1058_RS10655: HMPREF1058_RS10655 - hydroxymyristoyl-ACP dehydratase, at 608,531 to 608,911
_RS10655
HMPREF1058_RS10650: HMPREF1058_RS10650 - hypothetical protein, at 608,913 to 609,455
_RS10650
Position (kb) 607
608
609 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 606.685 kb on + strand, within HMPREF1058_RS10670 at 606.734 kb on - strand, within HMPREF1058_RS10670 at 606.742 kb on + strand, within HMPREF1058_RS10670 at 606.743 kb on - strand, within HMPREF1058_RS10670 at 606.795 kb on - strand, within HMPREF1058_RS10670 at 606.795 kb on - strand, within HMPREF1058_RS10670 at 606.795 kb on - strand, within HMPREF1058_RS10670 at 606.830 kb on - strand, within HMPREF1058_RS10670 at 606.853 kb on + strand, within HMPREF1058_RS10670 at 606.935 kb on - strand, within HMPREF1058_RS10670 at 606.947 kb on + strand, within HMPREF1058_RS10670 at 606.948 kb on - strand, within HMPREF1058_RS10670 at 606.950 kb on + strand, within HMPREF1058_RS10670 at 606.950 kb on + strand, within HMPREF1058_RS10670 at 606.951 kb on - strand, within HMPREF1058_RS10670 at 606.951 kb on - strand, within HMPREF1058_RS10670 at 606.951 kb on - strand, within HMPREF1058_RS10670 at 606.951 kb on - strand, within HMPREF1058_RS10670 at 606.951 kb on - strand, within HMPREF1058_RS10670 at 606.951 kb on - strand, within HMPREF1058_RS10670 at 606.951 kb on - strand, within HMPREF1058_RS10670 at 606.952 kb on + strand, within HMPREF1058_RS10670 at 606.952 kb on + strand, within HMPREF1058_RS10670 at 606.952 kb on + strand, within HMPREF1058_RS10670 at 606.953 kb on - strand, within HMPREF1058_RS10670 at 606.953 kb on - strand, within HMPREF1058_RS10670 at 606.953 kb on - strand, within HMPREF1058_RS10670 at 607.052 kb on + strand, within HMPREF1058_RS10670 at 607.074 kb on + strand, within HMPREF1058_RS10670 at 607.074 kb on + strand, within HMPREF1058_RS10670 at 607.108 kb on - strand, within HMPREF1058_RS10670 at 607.153 kb on - strand, within HMPREF1058_RS10670 at 607.156 kb on - strand, within HMPREF1058_RS10670 at 607.253 kb on + strand at 607.253 kb on + strand at 607.254 kb on - strand at 607.265 kb on + strand at 607.265 kb on + strand at 607.281 kb on - strand at 607.306 kb on - strand at 607.325 kb on + strand at 607.330 kb on - strand at 607.334 kb on + strand at 607.361 kb on + strand at 607.433 kb on - strand, within HMPREF1058_RS10665 at 607.472 kb on + strand, within HMPREF1058_RS10665 at 607.472 kb on + strand, within HMPREF1058_RS10665 at 607.472 kb on + strand, within HMPREF1058_RS10665 at 607.497 kb on + strand, within HMPREF1058_RS10665 at 607.518 kb on + strand, within HMPREF1058_RS10665 at 607.530 kb on - strand, within HMPREF1058_RS10665 at 607.576 kb on + strand, within HMPREF1058_RS10665 at 607.576 kb on + strand, within HMPREF1058_RS10665 at 607.577 kb on - strand, within HMPREF1058_RS10665 at 607.730 kb on + strand at 607.730 kb on + strand at 607.841 kb on + strand, within HMPREF1058_RS10660 at 607.849 kb on + strand, within HMPREF1058_RS10660 at 607.849 kb on + strand, within HMPREF1058_RS10660 at 607.881 kb on + strand, within HMPREF1058_RS10660 at 607.888 kb on + strand, within HMPREF1058_RS10660 at 607.911 kb on - strand, within HMPREF1058_RS10660 at 608.040 kb on + strand, within HMPREF1058_RS10660 at 608.040 kb on + strand, within HMPREF1058_RS10660 at 608.061 kb on + strand, within HMPREF1058_RS10660 at 608.061 kb on + strand, within HMPREF1058_RS10660 at 608.062 kb on - strand, within HMPREF1058_RS10660 at 608.062 kb on - strand, within HMPREF1058_RS10660 at 608.062 kb on - strand, within HMPREF1058_RS10660 at 608.063 kb on + strand, within HMPREF1058_RS10660 at 608.063 kb on + strand, within HMPREF1058_RS10660 at 608.068 kb on + strand, within HMPREF1058_RS10660 at 608.103 kb on - strand, within HMPREF1058_RS10660 at 608.103 kb on - strand, within HMPREF1058_RS10660 at 608.122 kb on - strand, within HMPREF1058_RS10660 at 608.192 kb on - strand, within HMPREF1058_RS10660 at 608.192 kb on - strand, within HMPREF1058_RS10660 at 608.200 kb on - strand, within HMPREF1058_RS10660 at 608.272 kb on + strand, within HMPREF1058_RS10660 at 608.276 kb on - strand, within HMPREF1058_RS10660 at 608.276 kb on - strand, within HMPREF1058_RS10660 at 608.280 kb on - strand, within HMPREF1058_RS10660 at 608.314 kb on + strand, within HMPREF1058_RS10660 at 608.315 kb on - strand, within HMPREF1058_RS10660 at 608.315 kb on - strand, within HMPREF1058_RS10660 at 608.315 kb on - strand, within HMPREF1058_RS10660 at 608.315 kb on - strand, within HMPREF1058_RS10660 at 608.370 kb on + strand at 608.371 kb on - strand at 608.384 kb on + strand at 608.391 kb on + strand at 608.392 kb on - strand at 608.421 kb on + strand at 608.423 kb on - strand at 608.435 kb on + strand at 608.539 kb on - strand at 608.542 kb on + strand at 608.543 kb on - strand at 608.543 kb on - strand at 608.636 kb on + strand, within HMPREF1058_RS10655 at 608.649 kb on - strand, within HMPREF1058_RS10655 at 608.649 kb on - strand, within HMPREF1058_RS10655 at 608.711 kb on + strand, within HMPREF1058_RS10655 at 608.711 kb on + strand, within HMPREF1058_RS10655 at 608.716 kb on - strand, within HMPREF1058_RS10655 at 608.759 kb on + strand, within HMPREF1058_RS10655 at 608.759 kb on + strand, within HMPREF1058_RS10655 at 608.770 kb on + strand, within HMPREF1058_RS10655 at 608.771 kb on - strand, within HMPREF1058_RS10655 at 608.771 kb on - strand, within HMPREF1058_RS10655 at 608.841 kb on - strand, within HMPREF1058_RS10655 at 608.847 kb on - strand, within HMPREF1058_RS10655 at 608.911 kb on + strand at 608.925 kb on + strand at 608.926 kb on - strand at 608.926 kb on - strand at 609.068 kb on + strand, within HMPREF1058_RS10650 at 609.081 kb on - strand, within HMPREF1058_RS10650 at 609.177 kb on + strand, within HMPREF1058_RS10650 at 609.180 kb on + strand, within HMPREF1058_RS10650 at 609.181 kb on - strand, within HMPREF1058_RS10650 at 609.181 kb on - strand, within HMPREF1058_RS10650 at 609.230 kb on - strand, within HMPREF1058_RS10650 at 609.240 kb on + strand, within HMPREF1058_RS10650 at 609.241 kb on - strand, within HMPREF1058_RS10650
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 remove 606,685 + HMPREF1058_RS10670 0.11 -1.7 606,734 - HMPREF1058_RS10670 0.18 -1.8 606,742 + HMPREF1058_RS10670 0.20 -0.2 606,743 - HMPREF1058_RS10670 0.20 -0.3 606,795 - HMPREF1058_RS10670 0.27 -1.5 606,795 - HMPREF1058_RS10670 0.27 +0.4 606,795 - HMPREF1058_RS10670 0.27 -0.9 606,830 - HMPREF1058_RS10670 0.32 -1.5 606,853 + HMPREF1058_RS10670 0.35 -1.8 606,935 - HMPREF1058_RS10670 0.47 +0.4 606,947 + HMPREF1058_RS10670 0.49 +0.8 606,948 - HMPREF1058_RS10670 0.49 +0.2 606,950 + HMPREF1058_RS10670 0.49 +0.0 606,950 + HMPREF1058_RS10670 0.49 -1.7 606,951 - HMPREF1058_RS10670 0.49 +1.6 606,951 - HMPREF1058_RS10670 0.49 -0.0 606,951 - HMPREF1058_RS10670 0.49 +0.1 606,951 - HMPREF1058_RS10670 0.49 +4.5 606,951 - HMPREF1058_RS10670 0.49 +1.4 606,951 - HMPREF1058_RS10670 0.49 -0.6 606,951 - HMPREF1058_RS10670 0.49 +1.6 606,952 + HMPREF1058_RS10670 0.50 +2.9 606,952 + HMPREF1058_RS10670 0.50 +1.0 606,952 + HMPREF1058_RS10670 0.50 +0.8 606,953 - HMPREF1058_RS10670 0.50 +0.1 606,953 - HMPREF1058_RS10670 0.50 +1.6 606,953 - HMPREF1058_RS10670 0.50 -0.1 607,052 + HMPREF1058_RS10670 0.64 -2.3 607,074 + HMPREF1058_RS10670 0.67 +0.1 607,074 + HMPREF1058_RS10670 0.67 +0.6 607,108 - HMPREF1058_RS10670 0.72 +0.1 607,153 - HMPREF1058_RS10670 0.78 +0.9 607,156 - HMPREF1058_RS10670 0.79 +0.4 607,253 + +0.5 607,253 + -0.7 607,254 - -0.5 607,265 + +0.2 607,265 + +3.2 607,281 - +0.6 607,306 - -1.8 607,325 + -0.5 607,330 - +0.9 607,334 + -0.4 607,361 + -0.8 607,433 - HMPREF1058_RS10665 0.20 -0.6 607,472 + HMPREF1058_RS10665 0.34 -0.8 607,472 + HMPREF1058_RS10665 0.34 -2.3 607,472 + HMPREF1058_RS10665 0.34 +0.8 607,497 + HMPREF1058_RS10665 0.43 +2.7 607,518 + HMPREF1058_RS10665 0.50 +0.6 607,530 - HMPREF1058_RS10665 0.54 +2.6 607,576 + HMPREF1058_RS10665 0.71 +0.1 607,576 + HMPREF1058_RS10665 0.71 +0.0 607,577 - HMPREF1058_RS10665 0.71 -0.9 607,730 + +1.4 607,730 + +0.8 607,841 + HMPREF1058_RS10660 0.21 +2.2 607,849 + HMPREF1058_RS10660 0.22 +1.1 607,849 + HMPREF1058_RS10660 0.22 +1.2 607,881 + HMPREF1058_RS10660 0.27 +0.1 607,888 + HMPREF1058_RS10660 0.28 -1.9 607,911 - HMPREF1058_RS10660 0.31 -3.9 608,040 + HMPREF1058_RS10660 0.48 -2.7 608,040 + HMPREF1058_RS10660 0.48 -0.9 608,061 + HMPREF1058_RS10660 0.51 -2.3 608,061 + HMPREF1058_RS10660 0.51 +1.1 608,062 - HMPREF1058_RS10660 0.51 +1.7 608,062 - HMPREF1058_RS10660 0.51 +1.7 608,062 - HMPREF1058_RS10660 0.51 -1.5 608,063 + HMPREF1058_RS10660 0.51 +1.4 608,063 + HMPREF1058_RS10660 0.51 +0.8 608,068 + HMPREF1058_RS10660 0.52 +1.5 608,103 - HMPREF1058_RS10660 0.57 -0.7 608,103 - HMPREF1058_RS10660 0.57 +1.6 608,122 - HMPREF1058_RS10660 0.59 +2.2 608,192 - HMPREF1058_RS10660 0.69 -0.9 608,192 - HMPREF1058_RS10660 0.69 -0.3 608,200 - HMPREF1058_RS10660 0.70 -0.9 608,272 + HMPREF1058_RS10660 0.80 -0.3 608,276 - HMPREF1058_RS10660 0.80 +0.1 608,276 - HMPREF1058_RS10660 0.80 -0.9 608,280 - HMPREF1058_RS10660 0.81 -0.9 608,314 + HMPREF1058_RS10660 0.85 -0.8 608,315 - HMPREF1058_RS10660 0.85 +1.5 608,315 - HMPREF1058_RS10660 0.85 -1.6 608,315 - HMPREF1058_RS10660 0.85 +1.5 608,315 - HMPREF1058_RS10660 0.85 +1.4 608,370 + +0.1 608,371 - -3.0 608,384 + +2.1 608,391 + +1.2 608,392 - +1.9 608,421 + +1.9 608,423 - +1.9 608,435 + -3.1 608,539 - +0.1 608,542 + -0.2 608,543 - +1.2 608,543 - +0.9 608,636 + HMPREF1058_RS10655 0.28 +0.5 608,649 - HMPREF1058_RS10655 0.31 +0.2 608,649 - HMPREF1058_RS10655 0.31 +0.5 608,711 + HMPREF1058_RS10655 0.47 +0.6 608,711 + HMPREF1058_RS10655 0.47 +0.8 608,716 - HMPREF1058_RS10655 0.49 -0.1 608,759 + HMPREF1058_RS10655 0.60 -1.8 608,759 + HMPREF1058_RS10655 0.60 +2.1 608,770 + HMPREF1058_RS10655 0.63 -1.5 608,771 - HMPREF1058_RS10655 0.63 +0.9 608,771 - HMPREF1058_RS10655 0.63 +0.4 608,841 - HMPREF1058_RS10655 0.81 -0.6 608,847 - HMPREF1058_RS10655 0.83 -0.2 608,911 + -0.8 608,925 + +2.0 608,926 - +0.5 608,926 - +0.8 609,068 + HMPREF1058_RS10650 0.29 +0.8 609,081 - HMPREF1058_RS10650 0.31 -3.3 609,177 + HMPREF1058_RS10650 0.49 -0.7 609,180 + HMPREF1058_RS10650 0.49 -1.9 609,181 - HMPREF1058_RS10650 0.49 +0.5 609,181 - HMPREF1058_RS10650 0.49 -0.4 609,230 - HMPREF1058_RS10650 0.58 -3.9 609,240 + HMPREF1058_RS10650 0.60 -1.4 609,241 - HMPREF1058_RS10650 0.60 -2.4
Or see this region's nucleotide sequence