Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10525

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10530 and HMPREF1058_RS10525 are separated by 23 nucleotidesHMPREF1058_RS10525 and HMPREF1058_RS10520 are separated by 802 nucleotides HMPREF1058_RS10530: HMPREF1058_RS10530 - arabinan endo-1,5-alpha-L-arabinosidase, at 642,864 to 644,399 _RS10530 HMPREF1058_RS10525: HMPREF1058_RS10525 - carbohydrate binding domain-containing protein, at 644,423 to 646,402 _RS10525 HMPREF1058_RS10520: HMPREF1058_RS10520 - arylsulfatase, at 647,205 to 648,767 _RS10520 Position (kb) 644 645 646 647Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4 5at 643.599 kb on - strand, within HMPREF1058_RS10530at 643.681 kb on - strand, within HMPREF1058_RS10530at 643.705 kb on - strand, within HMPREF1058_RS10530at 643.712 kb on + strand, within HMPREF1058_RS10530at 643.736 kb on + strand, within HMPREF1058_RS10530at 643.740 kb on + strand, within HMPREF1058_RS10530at 643.741 kb on - strand, within HMPREF1058_RS10530at 643.741 kb on - strand, within HMPREF1058_RS10530at 643.741 kb on - strand, within HMPREF1058_RS10530at 643.743 kb on - strand, within HMPREF1058_RS10530at 643.747 kb on + strand, within HMPREF1058_RS10530at 643.748 kb on - strand, within HMPREF1058_RS10530at 643.748 kb on - strand, within HMPREF1058_RS10530at 643.748 kb on - strand, within HMPREF1058_RS10530at 643.794 kb on + strand, within HMPREF1058_RS10530at 643.815 kb on - strand, within HMPREF1058_RS10530at 643.978 kb on + strand, within HMPREF1058_RS10530at 644.265 kb on - strandat 644.397 kb on + strandat 644.478 kb on + strandat 644.515 kb on + strandat 644.549 kb on + strandat 644.549 kb on + strandat 644.550 kb on - strandat 644.572 kb on + strandat 644.644 kb on + strand, within HMPREF1058_RS10525at 644.712 kb on - strand, within HMPREF1058_RS10525at 644.750 kb on - strand, within HMPREF1058_RS10525at 644.782 kb on - strand, within HMPREF1058_RS10525at 644.782 kb on - strand, within HMPREF1058_RS10525at 644.870 kb on - strand, within HMPREF1058_RS10525at 644.936 kb on + strand, within HMPREF1058_RS10525at 644.937 kb on - strand, within HMPREF1058_RS10525at 645.096 kb on + strand, within HMPREF1058_RS10525at 645.098 kb on + strand, within HMPREF1058_RS10525at 645.189 kb on + strand, within HMPREF1058_RS10525at 645.235 kb on + strand, within HMPREF1058_RS10525at 645.236 kb on - strand, within HMPREF1058_RS10525at 645.236 kb on - strand, within HMPREF1058_RS10525at 645.297 kb on - strand, within HMPREF1058_RS10525at 645.297 kb on - strand, within HMPREF1058_RS10525at 645.297 kb on - strand, within HMPREF1058_RS10525at 645.319 kb on - strand, within HMPREF1058_RS10525at 645.338 kb on - strand, within HMPREF1058_RS10525at 645.414 kb on - strand, within HMPREF1058_RS10525at 645.415 kb on + strand, within HMPREF1058_RS10525at 645.467 kb on - strand, within HMPREF1058_RS10525at 645.662 kb on + strand, within HMPREF1058_RS10525at 645.662 kb on + strand, within HMPREF1058_RS10525at 645.662 kb on + strand, within HMPREF1058_RS10525at 645.666 kb on + strand, within HMPREF1058_RS10525at 645.786 kb on + strand, within HMPREF1058_RS10525at 645.786 kb on + strand, within HMPREF1058_RS10525at 645.907 kb on + strand, within HMPREF1058_RS10525at 645.911 kb on + strand, within HMPREF1058_RS10525at 646.004 kb on + strand, within HMPREF1058_RS10525at 646.004 kb on + strand, within HMPREF1058_RS10525at 646.005 kb on - strand, within HMPREF1058_RS10525at 646.005 kb on - strand, within HMPREF1058_RS10525at 646.005 kb on - strand, within HMPREF1058_RS10525at 646.009 kb on - strand, within HMPREF1058_RS10525at 646.020 kb on - strand, within HMPREF1058_RS10525at 646.028 kb on - strand, within HMPREF1058_RS10525at 646.030 kb on + strand, within HMPREF1058_RS10525at 646.141 kb on + strand, within HMPREF1058_RS10525at 646.216 kb on + strandat 646.231 kb on + strandat 646.375 kb on + strandat 646.438 kb on + strandat 646.440 kb on + strandat 646.451 kb on - strandat 646.510 kb on + strandat 646.531 kb on + strandat 646.555 kb on - strandat 646.608 kb on + strandat 646.620 kb on - strandat 646.622 kb on - strandat 646.627 kb on - strandat 646.706 kb on + strandat 646.710 kb on + strandat 646.747 kb on - strandat 646.887 kb on + strandat 647.035 kb on + strandat 647.073 kb on + strandat 647.259 kb on + strandat 647.273 kb on - strandat 647.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4
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643,599 - HMPREF1058_RS10530 0.48 -3.4
643,681 - HMPREF1058_RS10530 0.53 -4.3
643,705 - HMPREF1058_RS10530 0.55 -1.2
643,712 + HMPREF1058_RS10530 0.55 +0.9
643,736 + HMPREF1058_RS10530 0.57 +2.1
643,740 + HMPREF1058_RS10530 0.57 +1.4
643,741 - HMPREF1058_RS10530 0.57 -3.1
643,741 - HMPREF1058_RS10530 0.57 -2.8
643,741 - HMPREF1058_RS10530 0.57 -3.2
643,743 - HMPREF1058_RS10530 0.57 -4.1
643,747 + HMPREF1058_RS10530 0.57 +5.0
643,748 - HMPREF1058_RS10530 0.58 -2.6
643,748 - HMPREF1058_RS10530 0.58 -1.0
643,748 - HMPREF1058_RS10530 0.58 -3.4
643,794 + HMPREF1058_RS10530 0.61 +0.0
643,815 - HMPREF1058_RS10530 0.62 -2.0
643,978 + HMPREF1058_RS10530 0.73 +0.9
644,265 - -2.5
644,397 + +0.4
644,478 + -2.0
644,515 + -2.5
644,549 + -6.7
644,549 + -2.6
644,550 - -3.0
644,572 + -2.8
644,644 + HMPREF1058_RS10525 0.11 -0.7
644,712 - HMPREF1058_RS10525 0.15 -3.0
644,750 - HMPREF1058_RS10525 0.17 +0.0
644,782 - HMPREF1058_RS10525 0.18 -3.5
644,782 - HMPREF1058_RS10525 0.18 -5.6
644,870 - HMPREF1058_RS10525 0.23 -4.3
644,936 + HMPREF1058_RS10525 0.26 -4.8
644,937 - HMPREF1058_RS10525 0.26 -3.6
645,096 + HMPREF1058_RS10525 0.34 -1.9
645,098 + HMPREF1058_RS10525 0.34 -4.1
645,189 + HMPREF1058_RS10525 0.39 +0.0
645,235 + HMPREF1058_RS10525 0.41 -0.6
645,236 - HMPREF1058_RS10525 0.41 -4.1
645,236 - HMPREF1058_RS10525 0.41 -3.3
645,297 - HMPREF1058_RS10525 0.44 -3.0
645,297 - HMPREF1058_RS10525 0.44 -3.7
645,297 - HMPREF1058_RS10525 0.44 -1.4
645,319 - HMPREF1058_RS10525 0.45 -4.4
645,338 - HMPREF1058_RS10525 0.46 -2.0
645,414 - HMPREF1058_RS10525 0.50 -1.6
645,415 + HMPREF1058_RS10525 0.50 -5.3
645,467 - HMPREF1058_RS10525 0.53 +0.0
645,662 + HMPREF1058_RS10525 0.63 -3.2
645,662 + HMPREF1058_RS10525 0.63 -2.6
645,662 + HMPREF1058_RS10525 0.63 -3.1
645,666 + HMPREF1058_RS10525 0.63 -1.6
645,786 + HMPREF1058_RS10525 0.69 -4.3
645,786 + HMPREF1058_RS10525 0.69 -4.5
645,907 + HMPREF1058_RS10525 0.75 -1.6
645,911 + HMPREF1058_RS10525 0.75 -2.8
646,004 + HMPREF1058_RS10525 0.80 -4.4
646,004 + HMPREF1058_RS10525 0.80 +0.0
646,005 - HMPREF1058_RS10525 0.80 -2.6
646,005 - HMPREF1058_RS10525 0.80 -3.3
646,005 - HMPREF1058_RS10525 0.80 -2.2
646,009 - HMPREF1058_RS10525 0.80 -2.9
646,020 - HMPREF1058_RS10525 0.81 -1.6
646,028 - HMPREF1058_RS10525 0.81 -2.3
646,030 + HMPREF1058_RS10525 0.81 -2.3
646,141 + HMPREF1058_RS10525 0.87 -1.1
646,216 + -2.0
646,231 + -6.6
646,375 + -2.6
646,438 + -1.6
646,440 + +0.5
646,451 - -0.6
646,510 + +2.6
646,531 + +0.0
646,555 - -2.8
646,608 + +0.2
646,620 - +1.8
646,622 - +0.0
646,627 - +0.5
646,706 + -1.6
646,710 + +0.0
646,747 - +1.0
646,887 + -0.7
647,035 + +1.0
647,073 + +0.6
647,259 + -1.8
647,273 - +1.7
647,318 - -1.0

Or see this region's nucleotide sequence