Experiment: TSB plate, 1:1 coculture with Rhizobium pusense TBS_045
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03830 and MPMX20_03831 overlap by 11 nucleotides MPMX20_03831 and MPMX20_03832 are separated by 49 nucleotides
MPMX20_03830: MPMX20_03830 - Sensor histidine kinase CitA, at 4,031,932 to 4,033,557
_03830
MPMX20_03831: MPMX20_03831 - Transcriptional regulatory protein CitB, at 4,033,547 to 4,034,239
_03831
MPMX20_03832: MPMX20_03832 - Constitutive ornithine decarboxylase, at 4,034,289 to 4,036,424
_03832
Position (kb)
4033
4034
4035 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 4032.595 kb on - strand, within MPMX20_03830 at 4032.636 kb on + strand, within MPMX20_03830 at 4032.677 kb on + strand, within MPMX20_03830 at 4032.677 kb on + strand, within MPMX20_03830 at 4032.685 kb on - strand, within MPMX20_03830 at 4032.721 kb on + strand, within MPMX20_03830 at 4032.724 kb on - strand, within MPMX20_03830 at 4032.729 kb on - strand, within MPMX20_03830 at 4032.736 kb on + strand, within MPMX20_03830 at 4032.788 kb on + strand, within MPMX20_03830 at 4032.788 kb on + strand, within MPMX20_03830 at 4032.796 kb on - strand, within MPMX20_03830 at 4032.895 kb on - strand, within MPMX20_03830 at 4032.904 kb on + strand, within MPMX20_03830 at 4032.911 kb on - strand, within MPMX20_03830 at 4032.911 kb on - strand, within MPMX20_03830 at 4032.911 kb on - strand, within MPMX20_03830 at 4032.912 kb on - strand, within MPMX20_03830 at 4032.916 kb on + strand, within MPMX20_03830 at 4032.963 kb on - strand, within MPMX20_03830 at 4033.036 kb on + strand, within MPMX20_03830 at 4033.037 kb on + strand, within MPMX20_03830 at 4033.037 kb on + strand, within MPMX20_03830 at 4033.039 kb on + strand, within MPMX20_03830 at 4033.076 kb on + strand, within MPMX20_03830 at 4033.084 kb on - strand, within MPMX20_03830 at 4033.084 kb on - strand, within MPMX20_03830 at 4033.085 kb on + strand, within MPMX20_03830 at 4033.101 kb on + strand, within MPMX20_03830 at 4033.109 kb on - strand, within MPMX20_03830 at 4033.125 kb on + strand, within MPMX20_03830 at 4033.142 kb on + strand, within MPMX20_03830 at 4033.142 kb on + strand, within MPMX20_03830 at 4033.185 kb on + strand, within MPMX20_03830 at 4033.185 kb on + strand, within MPMX20_03830 at 4033.195 kb on - strand, within MPMX20_03830 at 4033.211 kb on + strand, within MPMX20_03830 at 4033.232 kb on - strand, within MPMX20_03830 at 4033.238 kb on + strand, within MPMX20_03830 at 4033.262 kb on + strand, within MPMX20_03830 at 4033.262 kb on + strand, within MPMX20_03830 at 4033.262 kb on + strand, within MPMX20_03830 at 4033.268 kb on - strand, within MPMX20_03830 at 4033.268 kb on - strand, within MPMX20_03830 at 4033.270 kb on - strand, within MPMX20_03830 at 4033.270 kb on - strand, within MPMX20_03830 at 4033.270 kb on - strand, within MPMX20_03830 at 4033.270 kb on - strand, within MPMX20_03830 at 4033.306 kb on - strand, within MPMX20_03830 at 4033.405 kb on - strand at 4033.411 kb on + strand at 4033.412 kb on + strand at 4033.424 kb on - strand at 4033.433 kb on + strand at 4033.443 kb on + strand at 4033.443 kb on + strand at 4033.443 kb on + strand at 4033.443 kb on + strand at 4033.443 kb on + strand at 4033.443 kb on + strand at 4033.451 kb on - strand at 4033.451 kb on - strand at 4033.484 kb on + strand at 4033.500 kb on + strand at 4033.508 kb on - strand at 4033.508 kb on - strand at 4033.650 kb on + strand, within MPMX20_03831 at 4033.678 kb on + strand, within MPMX20_03831 at 4033.706 kb on - strand, within MPMX20_03831 at 4033.743 kb on + strand, within MPMX20_03831 at 4033.745 kb on - strand, within MPMX20_03831 at 4033.756 kb on - strand, within MPMX20_03831 at 4033.766 kb on + strand, within MPMX20_03831 at 4033.770 kb on - strand, within MPMX20_03831 at 4033.881 kb on - strand, within MPMX20_03831 at 4033.886 kb on + strand, within MPMX20_03831 at 4034.023 kb on - strand, within MPMX20_03831 at 4034.047 kb on + strand, within MPMX20_03831 at 4034.068 kb on - strand, within MPMX20_03831 at 4034.099 kb on + strand, within MPMX20_03831 at 4034.115 kb on - strand, within MPMX20_03831 at 4034.142 kb on + strand, within MPMX20_03831 at 4034.142 kb on + strand, within MPMX20_03831 at 4034.142 kb on + strand, within MPMX20_03831 at 4034.144 kb on + strand, within MPMX20_03831 at 4034.150 kb on - strand, within MPMX20_03831 at 4034.150 kb on - strand, within MPMX20_03831 at 4034.150 kb on - strand, within MPMX20_03831 at 4034.152 kb on - strand, within MPMX20_03831 at 4034.152 kb on - strand, within MPMX20_03831 at 4034.175 kb on + strand at 4034.240 kb on + strand at 4034.248 kb on - strand at 4034.305 kb on - strand at 4034.323 kb on - strand at 4034.390 kb on - strand at 4034.436 kb on - strand at 4034.454 kb on + strand at 4034.515 kb on - strand, within MPMX20_03832 at 4034.524 kb on + strand, within MPMX20_03832 at 4034.603 kb on + strand, within MPMX20_03832 at 4034.639 kb on + strand, within MPMX20_03832 at 4034.653 kb on - strand, within MPMX20_03832 at 4034.662 kb on - strand, within MPMX20_03832 at 4034.677 kb on - strand, within MPMX20_03832 at 4034.723 kb on - strand, within MPMX20_03832 at 4034.921 kb on + strand, within MPMX20_03832 at 4034.953 kb on + strand, within MPMX20_03832 at 4034.963 kb on + strand, within MPMX20_03832 at 4034.971 kb on - strand, within MPMX20_03832 at 4034.977 kb on + strand, within MPMX20_03832 at 4035.000 kb on + strand, within MPMX20_03832 at 4035.010 kb on - strand, within MPMX20_03832 at 4035.010 kb on - strand, within MPMX20_03832 at 4035.010 kb on - strand, within MPMX20_03832 at 4035.010 kb on - strand, within MPMX20_03832 at 4035.037 kb on - strand, within MPMX20_03832 at 4035.170 kb on + strand, within MPMX20_03832 at 4035.178 kb on - strand, within MPMX20_03832 at 4035.178 kb on - strand, within MPMX20_03832 at 4035.178 kb on - strand, within MPMX20_03832 at 4035.178 kb on - strand, within MPMX20_03832 at 4035.178 kb on - strand, within MPMX20_03832 at 4035.178 kb on - strand, within MPMX20_03832 at 4035.178 kb on - strand, within MPMX20_03832
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhizobium pusense TBS_045 remove 4,032,595 - MPMX20_03830 0.41 -0.3 4,032,636 + MPMX20_03830 0.43 -0.5 4,032,677 + MPMX20_03830 0.46 +0.4 4,032,677 + MPMX20_03830 0.46 +0.1 4,032,685 - MPMX20_03830 0.46 +0.5 4,032,721 + MPMX20_03830 0.49 +1.4 4,032,724 - MPMX20_03830 0.49 +0.3 4,032,729 - MPMX20_03830 0.49 -0.2 4,032,736 + MPMX20_03830 0.49 -1.2 4,032,788 + MPMX20_03830 0.53 -2.0 4,032,788 + MPMX20_03830 0.53 +1.8 4,032,796 - MPMX20_03830 0.53 -1.3 4,032,895 - MPMX20_03830 0.59 +0.5 4,032,904 + MPMX20_03830 0.60 +0.6 4,032,911 - MPMX20_03830 0.60 +0.1 4,032,911 - MPMX20_03830 0.60 -0.9 4,032,911 - MPMX20_03830 0.60 +0.5 4,032,912 - MPMX20_03830 0.60 -2.5 4,032,916 + MPMX20_03830 0.61 +0.7 4,032,963 - MPMX20_03830 0.63 -0.8 4,033,036 + MPMX20_03830 0.68 -0.9 4,033,037 + MPMX20_03830 0.68 -2.5 4,033,037 + MPMX20_03830 0.68 -0.1 4,033,039 + MPMX20_03830 0.68 -0.8 4,033,076 + MPMX20_03830 0.70 -2.0 4,033,084 - MPMX20_03830 0.71 -0.1 4,033,084 - MPMX20_03830 0.71 -2.8 4,033,085 + MPMX20_03830 0.71 -1.1 4,033,101 + MPMX20_03830 0.72 -1.9 4,033,109 - MPMX20_03830 0.72 +1.6 4,033,125 + MPMX20_03830 0.73 +1.2 4,033,142 + MPMX20_03830 0.74 -0.4 4,033,142 + MPMX20_03830 0.74 +0.8 4,033,185 + MPMX20_03830 0.77 -0.5 4,033,185 + MPMX20_03830 0.77 +0.1 4,033,195 - MPMX20_03830 0.78 +2.4 4,033,211 + MPMX20_03830 0.79 -0.0 4,033,232 - MPMX20_03830 0.80 -0.1 4,033,238 + MPMX20_03830 0.80 -0.4 4,033,262 + MPMX20_03830 0.82 -0.2 4,033,262 + MPMX20_03830 0.82 -1.9 4,033,262 + MPMX20_03830 0.82 +0.3 4,033,268 - MPMX20_03830 0.82 -0.1 4,033,268 - MPMX20_03830 0.82 +0.1 4,033,270 - MPMX20_03830 0.82 -0.0 4,033,270 - MPMX20_03830 0.82 +3.2 4,033,270 - MPMX20_03830 0.82 -0.6 4,033,270 - MPMX20_03830 0.82 -0.9 4,033,306 - MPMX20_03830 0.85 +1.6 4,033,405 - -1.3 4,033,411 + -1.9 4,033,412 + +1.0 4,033,424 - +0.3 4,033,433 + -1.5 4,033,443 + +0.4 4,033,443 + -0.7 4,033,443 + +0.4 4,033,443 + +1.2 4,033,443 + +1.4 4,033,443 + -0.2 4,033,451 - +0.9 4,033,451 - -0.6 4,033,484 + -0.2 4,033,500 + -0.6 4,033,508 - -2.0 4,033,508 - -0.9 4,033,650 + MPMX20_03831 0.15 +0.2 4,033,678 + MPMX20_03831 0.19 +0.4 4,033,706 - MPMX20_03831 0.23 +0.6 4,033,743 + MPMX20_03831 0.28 +0.4 4,033,745 - MPMX20_03831 0.29 -0.9 4,033,756 - MPMX20_03831 0.30 +0.4 4,033,766 + MPMX20_03831 0.32 +0.6 4,033,770 - MPMX20_03831 0.32 -0.6 4,033,881 - MPMX20_03831 0.48 -0.1 4,033,886 + MPMX20_03831 0.49 +0.1 4,034,023 - MPMX20_03831 0.69 -1.6 4,034,047 + MPMX20_03831 0.72 +0.1 4,034,068 - MPMX20_03831 0.75 +1.4 4,034,099 + MPMX20_03831 0.80 -1.6 4,034,115 - MPMX20_03831 0.82 +1.8 4,034,142 + MPMX20_03831 0.86 +2.1 4,034,142 + MPMX20_03831 0.86 +1.1 4,034,142 + MPMX20_03831 0.86 +3.4 4,034,144 + MPMX20_03831 0.86 -1.8 4,034,150 - MPMX20_03831 0.87 +1.1 4,034,150 - MPMX20_03831 0.87 +2.4 4,034,150 - MPMX20_03831 0.87 -2.0 4,034,152 - MPMX20_03831 0.87 +0.6 4,034,152 - MPMX20_03831 0.87 +1.7 4,034,175 + +0.3 4,034,240 + -0.3 4,034,248 - -0.8 4,034,305 - +0.0 4,034,323 - +0.8 4,034,390 - -2.0 4,034,436 - +0.3 4,034,454 + -0.2 4,034,515 - MPMX20_03832 0.11 -0.4 4,034,524 + MPMX20_03832 0.11 -1.2 4,034,603 + MPMX20_03832 0.15 -0.8 4,034,639 + MPMX20_03832 0.16 +0.4 4,034,653 - MPMX20_03832 0.17 -1.6 4,034,662 - MPMX20_03832 0.17 -2.6 4,034,677 - MPMX20_03832 0.18 -1.6 4,034,723 - MPMX20_03832 0.20 +0.1 4,034,921 + MPMX20_03832 0.30 -1.0 4,034,953 + MPMX20_03832 0.31 +0.1 4,034,963 + MPMX20_03832 0.32 -0.7 4,034,971 - MPMX20_03832 0.32 -1.0 4,034,977 + MPMX20_03832 0.32 +1.2 4,035,000 + MPMX20_03832 0.33 -0.3 4,035,010 - MPMX20_03832 0.34 +0.1 4,035,010 - MPMX20_03832 0.34 -0.6 4,035,010 - MPMX20_03832 0.34 +0.1 4,035,010 - MPMX20_03832 0.34 +4.0 4,035,037 - MPMX20_03832 0.35 +0.0 4,035,170 + MPMX20_03832 0.41 +0.1 4,035,178 - MPMX20_03832 0.42 -0.8 4,035,178 - MPMX20_03832 0.42 +5.3 4,035,178 - MPMX20_03832 0.42 -1.1 4,035,178 - MPMX20_03832 0.42 +1.4 4,035,178 - MPMX20_03832 0.42 -0.2 4,035,178 - MPMX20_03832 0.42 -0.2 4,035,178 - MPMX20_03832 0.42 -0.5
Or see this region's nucleotide sequence