Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02659

Experiment: TSB plate, 1:1 coculture with Rhizobium pusense TBS_045

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02658 and MPMX20_02659 are separated by 36 nucleotidesMPMX20_02659 and MPMX20_02660 are separated by 24 nucleotides MPMX20_02658: MPMX20_02658 - hypothetical protein, at 2,804,279 to 2,805,745 _02658 MPMX20_02659: MPMX20_02659 - Serine/threonine-protein kinase PknD, at 2,805,782 to 2,807,218 _02659 MPMX20_02660: MPMX20_02660 - Protein ClpV1, at 2,807,243 to 2,809,858 _02660 Position (kb) 2805 2806 2807 2808Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2804.837 kb on + strand, within MPMX20_02658at 2804.893 kb on + strand, within MPMX20_02658at 2804.893 kb on + strand, within MPMX20_02658at 2804.893 kb on + strand, within MPMX20_02658at 2804.901 kb on - strand, within MPMX20_02658at 2804.903 kb on + strand, within MPMX20_02658at 2804.903 kb on + strand, within MPMX20_02658at 2804.903 kb on + strand, within MPMX20_02658at 2804.903 kb on + strand, within MPMX20_02658at 2804.911 kb on - strand, within MPMX20_02658at 2804.913 kb on + strand, within MPMX20_02658at 2804.916 kb on - strand, within MPMX20_02658at 2804.923 kb on - strand, within MPMX20_02658at 2804.931 kb on - strand, within MPMX20_02658at 2805.001 kb on - strand, within MPMX20_02658at 2805.055 kb on - strand, within MPMX20_02658at 2805.063 kb on - strand, within MPMX20_02658at 2805.063 kb on - strand, within MPMX20_02658at 2805.066 kb on + strand, within MPMX20_02658at 2805.071 kb on - strand, within MPMX20_02658at 2805.094 kb on - strand, within MPMX20_02658at 2805.176 kb on - strand, within MPMX20_02658at 2805.258 kb on + strand, within MPMX20_02658at 2805.265 kb on - strand, within MPMX20_02658at 2805.275 kb on - strand, within MPMX20_02658at 2805.296 kb on - strand, within MPMX20_02658at 2805.365 kb on + strand, within MPMX20_02658at 2805.396 kb on - strand, within MPMX20_02658at 2805.410 kb on + strand, within MPMX20_02658at 2805.418 kb on - strand, within MPMX20_02658at 2805.533 kb on - strand, within MPMX20_02658at 2805.544 kb on + strand, within MPMX20_02658at 2805.544 kb on + strand, within MPMX20_02658at 2805.552 kb on - strand, within MPMX20_02658at 2805.552 kb on - strand, within MPMX20_02658at 2805.552 kb on - strand, within MPMX20_02658at 2805.617 kb on - strandat 2805.658 kb on + strandat 2805.777 kb on - strandat 2805.777 kb on - strandat 2805.801 kb on + strandat 2805.801 kb on + strandat 2805.809 kb on - strandat 2805.809 kb on - strandat 2805.809 kb on - strandat 2805.869 kb on - strandat 2805.921 kb on + strandat 2805.929 kb on - strand, within MPMX20_02659at 2805.969 kb on + strand, within MPMX20_02659at 2805.969 kb on + strand, within MPMX20_02659at 2806.031 kb on - strand, within MPMX20_02659at 2806.099 kb on - strand, within MPMX20_02659at 2806.163 kb on - strand, within MPMX20_02659at 2806.199 kb on + strand, within MPMX20_02659at 2806.230 kb on + strand, within MPMX20_02659at 2806.262 kb on - strand, within MPMX20_02659at 2806.404 kb on + strand, within MPMX20_02659at 2806.430 kb on - strand, within MPMX20_02659at 2806.461 kb on - strand, within MPMX20_02659at 2806.530 kb on - strand, within MPMX20_02659at 2806.676 kb on - strand, within MPMX20_02659at 2806.702 kb on - strand, within MPMX20_02659at 2806.763 kb on - strand, within MPMX20_02659at 2806.764 kb on + strand, within MPMX20_02659at 2806.764 kb on + strand, within MPMX20_02659at 2806.772 kb on - strand, within MPMX20_02659at 2806.791 kb on - strand, within MPMX20_02659at 2806.793 kb on + strand, within MPMX20_02659at 2806.793 kb on + strand, within MPMX20_02659at 2806.801 kb on - strand, within MPMX20_02659at 2806.854 kb on + strand, within MPMX20_02659at 2806.854 kb on + strand, within MPMX20_02659at 2806.926 kb on - strand, within MPMX20_02659at 2806.967 kb on + strand, within MPMX20_02659at 2806.975 kb on - strand, within MPMX20_02659at 2807.011 kb on + strand, within MPMX20_02659at 2807.011 kb on + strand, within MPMX20_02659at 2807.060 kb on - strand, within MPMX20_02659at 2807.070 kb on + strand, within MPMX20_02659at 2807.103 kb on + strandat 2807.163 kb on - strandat 2807.182 kb on + strandat 2807.191 kb on - strandat 2807.193 kb on + strandat 2807.201 kb on - strandat 2807.201 kb on - strandat 2807.227 kb on - strandat 2807.265 kb on + strandat 2807.275 kb on + strandat 2807.275 kb on + strandat 2807.275 kb on + strandat 2807.275 kb on + strandat 2807.283 kb on - strandat 2807.283 kb on - strandat 2807.295 kb on + strandat 2807.295 kb on + strandat 2807.295 kb on + strandat 2807.303 kb on - strandat 2807.303 kb on - strandat 2807.305 kb on - strandat 2807.350 kb on - strandat 2807.373 kb on + strandat 2807.401 kb on + strandat 2807.401 kb on + strandat 2807.567 kb on + strand, within MPMX20_02660at 2807.572 kb on - strand, within MPMX20_02660at 2807.577 kb on + strand, within MPMX20_02660at 2807.661 kb on + strand, within MPMX20_02660at 2807.666 kb on + strand, within MPMX20_02660at 2807.674 kb on - strand, within MPMX20_02660at 2807.679 kb on - strand, within MPMX20_02660at 2807.684 kb on - strand, within MPMX20_02660at 2807.716 kb on + strand, within MPMX20_02660at 2807.745 kb on + strand, within MPMX20_02660at 2807.826 kb on - strand, within MPMX20_02660at 2807.852 kb on + strand, within MPMX20_02660at 2807.860 kb on - strand, within MPMX20_02660at 2807.893 kb on - strand, within MPMX20_02660at 2807.914 kb on - strand, within MPMX20_02660at 2807.915 kb on + strand, within MPMX20_02660at 2807.962 kb on + strand, within MPMX20_02660at 2808.114 kb on + strand, within MPMX20_02660at 2808.114 kb on + strand, within MPMX20_02660at 2808.114 kb on - strand, within MPMX20_02660at 2808.139 kb on + strand, within MPMX20_02660at 2808.139 kb on + strand, within MPMX20_02660at 2808.156 kb on + strand, within MPMX20_02660

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhizobium pusense TBS_045
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2,804,837 + MPMX20_02658 0.38 +0.8
2,804,893 + MPMX20_02658 0.42 -0.1
2,804,893 + MPMX20_02658 0.42 -1.6
2,804,893 + MPMX20_02658 0.42 -0.8
2,804,901 - MPMX20_02658 0.42 -0.6
2,804,903 + MPMX20_02658 0.43 -0.8
2,804,903 + MPMX20_02658 0.43 +0.1
2,804,903 + MPMX20_02658 0.43 -0.4
2,804,903 + MPMX20_02658 0.43 +0.5
2,804,911 - MPMX20_02658 0.43 -1.8
2,804,913 + MPMX20_02658 0.43 -1.7
2,804,916 - MPMX20_02658 0.43 +2.1
2,804,923 - MPMX20_02658 0.44 -1.0
2,804,931 - MPMX20_02658 0.44 -0.9
2,805,001 - MPMX20_02658 0.49 -0.7
2,805,055 - MPMX20_02658 0.53 -2.6
2,805,063 - MPMX20_02658 0.53 -1.9
2,805,063 - MPMX20_02658 0.53 -1.1
2,805,066 + MPMX20_02658 0.54 +0.1
2,805,071 - MPMX20_02658 0.54 -0.6
2,805,094 - MPMX20_02658 0.56 -0.3
2,805,176 - MPMX20_02658 0.61 -1.4
2,805,258 + MPMX20_02658 0.67 +0.2
2,805,265 - MPMX20_02658 0.67 +0.1
2,805,275 - MPMX20_02658 0.68 -2.2
2,805,296 - MPMX20_02658 0.69 +0.4
2,805,365 + MPMX20_02658 0.74 +1.5
2,805,396 - MPMX20_02658 0.76 -0.5
2,805,410 + MPMX20_02658 0.77 +2.0
2,805,418 - MPMX20_02658 0.78 -0.3
2,805,533 - MPMX20_02658 0.85 +0.4
2,805,544 + MPMX20_02658 0.86 +0.5
2,805,544 + MPMX20_02658 0.86 +0.0
2,805,552 - MPMX20_02658 0.87 +1.4
2,805,552 - MPMX20_02658 0.87 +0.2
2,805,552 - MPMX20_02658 0.87 -1.9
2,805,617 - +0.0
2,805,658 + +0.8
2,805,777 - +0.2
2,805,777 - -1.0
2,805,801 + -1.0
2,805,801 + +0.8
2,805,809 - -0.6
2,805,809 - +0.3
2,805,809 - -1.1
2,805,869 - -0.1
2,805,921 + +1.0
2,805,929 - MPMX20_02659 0.10 -1.7
2,805,969 + MPMX20_02659 0.13 +1.3
2,805,969 + MPMX20_02659 0.13 +1.4
2,806,031 - MPMX20_02659 0.17 -0.5
2,806,099 - MPMX20_02659 0.22 +0.2
2,806,163 - MPMX20_02659 0.27 -0.0
2,806,199 + MPMX20_02659 0.29 +2.6
2,806,230 + MPMX20_02659 0.31 +2.1
2,806,262 - MPMX20_02659 0.33 +0.7
2,806,404 + MPMX20_02659 0.43 -2.1
2,806,430 - MPMX20_02659 0.45 +0.7
2,806,461 - MPMX20_02659 0.47 -1.4
2,806,530 - MPMX20_02659 0.52 +0.8
2,806,676 - MPMX20_02659 0.62 +0.9
2,806,702 - MPMX20_02659 0.64 +0.8
2,806,763 - MPMX20_02659 0.68 +2.0
2,806,764 + MPMX20_02659 0.68 +1.6
2,806,764 + MPMX20_02659 0.68 +0.2
2,806,772 - MPMX20_02659 0.69 +0.8
2,806,791 - MPMX20_02659 0.70 +2.3
2,806,793 + MPMX20_02659 0.70 +2.2
2,806,793 + MPMX20_02659 0.70 +1.4
2,806,801 - MPMX20_02659 0.71 +0.7
2,806,854 + MPMX20_02659 0.75 +2.0
2,806,854 + MPMX20_02659 0.75 -1.7
2,806,926 - MPMX20_02659 0.80 +0.6
2,806,967 + MPMX20_02659 0.82 +1.5
2,806,975 - MPMX20_02659 0.83 +2.1
2,807,011 + MPMX20_02659 0.86 +0.8
2,807,011 + MPMX20_02659 0.86 -0.8
2,807,060 - MPMX20_02659 0.89 +1.7
2,807,070 + MPMX20_02659 0.90 +1.1
2,807,103 + +0.8
2,807,163 - +0.5
2,807,182 + -0.3
2,807,191 - -0.4
2,807,193 + +2.3
2,807,201 - +0.4
2,807,201 - -1.1
2,807,227 - +1.4
2,807,265 + +0.2
2,807,275 + +0.3
2,807,275 + -1.0
2,807,275 + -0.6
2,807,275 + -1.8
2,807,283 - +0.8
2,807,283 - -1.3
2,807,295 + -0.9
2,807,295 + -0.8
2,807,295 + -2.6
2,807,303 - -1.2
2,807,303 - -0.9
2,807,305 - -1.6
2,807,350 - -1.5
2,807,373 + -1.2
2,807,401 + +0.3
2,807,401 + -0.4
2,807,567 + MPMX20_02660 0.12 -0.8
2,807,572 - MPMX20_02660 0.13 -1.7
2,807,577 + MPMX20_02660 0.13 -0.6
2,807,661 + MPMX20_02660 0.16 +0.8
2,807,666 + MPMX20_02660 0.16 -0.6
2,807,674 - MPMX20_02660 0.16 -3.0
2,807,679 - MPMX20_02660 0.17 +0.3
2,807,684 - MPMX20_02660 0.17 -0.2
2,807,716 + MPMX20_02660 0.18 -0.2
2,807,745 + MPMX20_02660 0.19 +2.3
2,807,826 - MPMX20_02660 0.22 +0.7
2,807,852 + MPMX20_02660 0.23 -2.0
2,807,860 - MPMX20_02660 0.24 -1.8
2,807,893 - MPMX20_02660 0.25 +2.4
2,807,914 - MPMX20_02660 0.26 -0.1
2,807,915 + MPMX20_02660 0.26 +0.1
2,807,962 + MPMX20_02660 0.27 -2.6
2,808,114 + MPMX20_02660 0.33 -0.1
2,808,114 + MPMX20_02660 0.33 +1.2
2,808,114 - MPMX20_02660 0.33 -0.9
2,808,139 + MPMX20_02660 0.34 +0.1
2,808,139 + MPMX20_02660 0.34 -1.3
2,808,156 + MPMX20_02660 0.35 -0.0

Or see this region's nucleotide sequence