Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01325

Experiment: TSB plate, 1:1 coculture with Rhizobium pusense TBS_045

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01324 and MPMX20_01325 are separated by 326 nucleotidesMPMX20_01325 and MPMX20_01326 are separated by 169 nucleotides MPMX20_01324: MPMX20_01324 - Glucosamine-6-phosphate deaminase, at 1,381,240 to 1,382,040 _01324 MPMX20_01325: MPMX20_01325 - PTS system N-acetylglucosamine-specific EIICBA component, at 1,382,367 to 1,384,316 _01325 MPMX20_01326: MPMX20_01326 - Glutamine--tRNA ligase, at 1,384,486 to 1,386,153 _01326 Position (kb) 1382 1383 1384 1385Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1381.367 kb on + strand, within MPMX20_01324at 1381.367 kb on + strand, within MPMX20_01324at 1381.375 kb on - strand, within MPMX20_01324at 1381.408 kb on - strand, within MPMX20_01324at 1381.483 kb on - strand, within MPMX20_01324at 1381.492 kb on + strand, within MPMX20_01324at 1381.552 kb on + strand, within MPMX20_01324at 1381.589 kb on - strand, within MPMX20_01324at 1381.589 kb on - strand, within MPMX20_01324at 1381.634 kb on + strand, within MPMX20_01324at 1381.642 kb on - strand, within MPMX20_01324at 1381.781 kb on - strand, within MPMX20_01324at 1381.808 kb on + strand, within MPMX20_01324at 1381.838 kb on - strand, within MPMX20_01324at 1381.845 kb on - strand, within MPMX20_01324at 1381.853 kb on + strand, within MPMX20_01324at 1381.866 kb on - strand, within MPMX20_01324at 1381.973 kb on - strandat 1381.973 kb on - strandat 1381.973 kb on - strandat 1382.061 kb on + strandat 1382.061 kb on + strandat 1382.105 kb on + strandat 1382.105 kb on + strandat 1382.105 kb on + strandat 1382.113 kb on - strandat 1382.114 kb on - strandat 1382.125 kb on + strandat 1382.266 kb on + strandat 1382.266 kb on + strandat 1382.266 kb on + strandat 1382.268 kb on + strandat 1382.272 kb on - strandat 1382.274 kb on - strandat 1382.324 kb on + strandat 1382.336 kb on + strandat 1382.358 kb on - strandat 1382.401 kb on + strandat 1382.414 kb on + strandat 1382.414 kb on + strandat 1382.414 kb on + strandat 1382.414 kb on + strandat 1382.414 kb on + strandat 1382.422 kb on - strandat 1382.422 kb on - strandat 1382.583 kb on + strand, within MPMX20_01325at 1382.588 kb on + strand, within MPMX20_01325at 1382.588 kb on + strand, within MPMX20_01325at 1382.613 kb on - strand, within MPMX20_01325at 1382.705 kb on - strand, within MPMX20_01325at 1382.724 kb on + strand, within MPMX20_01325at 1382.776 kb on - strand, within MPMX20_01325at 1382.778 kb on + strand, within MPMX20_01325at 1382.816 kb on + strand, within MPMX20_01325at 1382.941 kb on - strand, within MPMX20_01325at 1382.978 kb on + strand, within MPMX20_01325at 1383.030 kb on + strand, within MPMX20_01325at 1383.030 kb on + strand, within MPMX20_01325at 1383.038 kb on - strand, within MPMX20_01325at 1383.038 kb on - strand, within MPMX20_01325at 1383.089 kb on + strand, within MPMX20_01325at 1383.136 kb on + strand, within MPMX20_01325at 1383.144 kb on - strand, within MPMX20_01325at 1383.144 kb on - strand, within MPMX20_01325at 1383.144 kb on - strand, within MPMX20_01325at 1383.190 kb on + strand, within MPMX20_01325at 1383.190 kb on + strand, within MPMX20_01325at 1383.236 kb on + strand, within MPMX20_01325at 1383.263 kb on - strand, within MPMX20_01325at 1383.265 kb on + strand, within MPMX20_01325at 1383.293 kb on + strand, within MPMX20_01325at 1383.339 kb on + strand, within MPMX20_01325at 1383.376 kb on + strand, within MPMX20_01325at 1383.396 kb on + strand, within MPMX20_01325at 1383.404 kb on - strand, within MPMX20_01325at 1383.404 kb on - strand, within MPMX20_01325at 1383.423 kb on + strand, within MPMX20_01325at 1383.502 kb on - strand, within MPMX20_01325at 1383.515 kb on - strand, within MPMX20_01325at 1383.589 kb on - strand, within MPMX20_01325at 1383.589 kb on - strand, within MPMX20_01325at 1383.766 kb on + strand, within MPMX20_01325at 1383.774 kb on - strand, within MPMX20_01325at 1383.797 kb on - strand, within MPMX20_01325at 1383.797 kb on - strand, within MPMX20_01325at 1383.869 kb on + strand, within MPMX20_01325at 1383.877 kb on - strand, within MPMX20_01325at 1383.901 kb on - strand, within MPMX20_01325at 1384.069 kb on + strand, within MPMX20_01325at 1384.077 kb on + strand, within MPMX20_01325at 1384.101 kb on + strand, within MPMX20_01325at 1384.122 kb on + strandat 1384.140 kb on - strandat 1384.170 kb on + strandat 1384.179 kb on + strandat 1384.204 kb on + strandat 1384.230 kb on + strandat 1384.276 kb on + strandat 1384.303 kb on - strandat 1384.325 kb on + strandat 1384.330 kb on + strandat 1384.330 kb on + strandat 1384.332 kb on - strandat 1384.333 kb on - strandat 1384.337 kb on + strandat 1384.345 kb on - strandat 1384.345 kb on - strandat 1384.409 kb on + strandat 1384.410 kb on + strandat 1384.410 kb on + strandat 1384.417 kb on + strandat 1384.418 kb on + strandat 1384.418 kb on - strandat 1384.453 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhizobium pusense TBS_045
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1,381,367 + MPMX20_01324 0.16 -0.2
1,381,367 + MPMX20_01324 0.16 -0.3
1,381,375 - MPMX20_01324 0.17 +0.4
1,381,408 - MPMX20_01324 0.21 -1.7
1,381,483 - MPMX20_01324 0.30 -0.4
1,381,492 + MPMX20_01324 0.31 -0.2
1,381,552 + MPMX20_01324 0.39 +0.8
1,381,589 - MPMX20_01324 0.44 +0.7
1,381,589 - MPMX20_01324 0.44 -0.1
1,381,634 + MPMX20_01324 0.49 -0.0
1,381,642 - MPMX20_01324 0.50 -0.4
1,381,781 - MPMX20_01324 0.68 +0.8
1,381,808 + MPMX20_01324 0.71 -2.9
1,381,838 - MPMX20_01324 0.75 -0.1
1,381,845 - MPMX20_01324 0.76 -0.9
1,381,853 + MPMX20_01324 0.77 +1.4
1,381,866 - MPMX20_01324 0.78 -0.1
1,381,973 - +1.5
1,381,973 - -0.2
1,381,973 - -0.5
1,382,061 + -1.5
1,382,061 + -1.2
1,382,105 + +0.7
1,382,105 + +0.0
1,382,105 + -1.7
1,382,113 - +1.4
1,382,114 - -0.0
1,382,125 + -0.8
1,382,266 + +2.1
1,382,266 + -0.8
1,382,266 + +2.1
1,382,268 + -0.2
1,382,272 - -0.6
1,382,274 - +1.0
1,382,324 + -1.4
1,382,336 + +0.1
1,382,358 - -0.4
1,382,401 + -0.4
1,382,414 + -3.0
1,382,414 + -0.6
1,382,414 + +1.1
1,382,414 + +0.4
1,382,414 + -0.6
1,382,422 - -0.8
1,382,422 - +0.4
1,382,583 + MPMX20_01325 0.11 +0.8
1,382,588 + MPMX20_01325 0.11 +0.4
1,382,588 + MPMX20_01325 0.11 -0.6
1,382,613 - MPMX20_01325 0.13 +0.4
1,382,705 - MPMX20_01325 0.17 -0.9
1,382,724 + MPMX20_01325 0.18 -1.6
1,382,776 - MPMX20_01325 0.21 +0.5
1,382,778 + MPMX20_01325 0.21 +0.5
1,382,816 + MPMX20_01325 0.23 +1.8
1,382,941 - MPMX20_01325 0.29 +0.8
1,382,978 + MPMX20_01325 0.31 -2.0
1,383,030 + MPMX20_01325 0.34 -1.3
1,383,030 + MPMX20_01325 0.34 +0.4
1,383,038 - MPMX20_01325 0.34 +1.4
1,383,038 - MPMX20_01325 0.34 -2.8
1,383,089 + MPMX20_01325 0.37 -1.0
1,383,136 + MPMX20_01325 0.39 +0.3
1,383,144 - MPMX20_01325 0.40 +0.9
1,383,144 - MPMX20_01325 0.40 -0.4
1,383,144 - MPMX20_01325 0.40 -0.2
1,383,190 + MPMX20_01325 0.42 -0.2
1,383,190 + MPMX20_01325 0.42 -0.4
1,383,236 + MPMX20_01325 0.45 -2.4
1,383,263 - MPMX20_01325 0.46 +0.4
1,383,265 + MPMX20_01325 0.46 -0.5
1,383,293 + MPMX20_01325 0.47 +3.4
1,383,339 + MPMX20_01325 0.50 +2.4
1,383,376 + MPMX20_01325 0.52 -0.4
1,383,396 + MPMX20_01325 0.53 -0.3
1,383,404 - MPMX20_01325 0.53 -0.4
1,383,404 - MPMX20_01325 0.53 +0.4
1,383,423 + MPMX20_01325 0.54 -2.0
1,383,502 - MPMX20_01325 0.58 +2.7
1,383,515 - MPMX20_01325 0.59 +1.4
1,383,589 - MPMX20_01325 0.63 -0.1
1,383,589 - MPMX20_01325 0.63 +0.6
1,383,766 + MPMX20_01325 0.72 +0.4
1,383,774 - MPMX20_01325 0.72 -0.4
1,383,797 - MPMX20_01325 0.73 +0.6
1,383,797 - MPMX20_01325 0.73 -0.8
1,383,869 + MPMX20_01325 0.77 -1.1
1,383,877 - MPMX20_01325 0.77 -1.6
1,383,901 - MPMX20_01325 0.79 -0.4
1,384,069 + MPMX20_01325 0.87 +0.4
1,384,077 + MPMX20_01325 0.88 -0.4
1,384,101 + MPMX20_01325 0.89 +6.5
1,384,122 + -0.6
1,384,140 - +0.2
1,384,170 + +1.0
1,384,179 + -0.4
1,384,204 + +0.0
1,384,230 + -0.7
1,384,276 + +0.4
1,384,303 - +0.5
1,384,325 + -0.4
1,384,330 + -0.2
1,384,330 + -0.4
1,384,332 - +0.5
1,384,333 - +0.1
1,384,337 + +0.3
1,384,345 - -2.0
1,384,345 - -0.6
1,384,409 + -1.2
1,384,410 + +0.4
1,384,410 + -0.1
1,384,417 + -0.9
1,384,418 + -0.3
1,384,418 - -0.8
1,384,453 + -0.6

Or see this region's nucleotide sequence