Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04373

Experiment: 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04372 and MPMX20_04373 are separated by 2 nucleotidesMPMX20_04373 and MPMX20_04374 overlap by 44 nucleotidesMPMX20_04374 and MPMX20_04375 overlap by 4 nucleotidesMPMX20_04375 and MPMX20_04376 overlap by 4 nucleotides MPMX20_04372: MPMX20_04372 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 4,563,162 to 4,564,391 _04372 MPMX20_04373: MPMX20_04373 - hypothetical protein, at 4,564,394 to 4,564,987 _04373 MPMX20_04374: MPMX20_04374 - putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF, at 4,564,944 to 4,565,348 _04374 MPMX20_04375: MPMX20_04375 - putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 4,565,345 to 4,565,683 _04375 MPMX20_04376: MPMX20_04376 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 4,565,680 to 4,567,335 _04376 Position (kb) 4564 4565Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 4563.400 kb on + strand, within MPMX20_04372at 4563.439 kb on + strand, within MPMX20_04372at 4563.496 kb on + strand, within MPMX20_04372at 4563.496 kb on + strand, within MPMX20_04372at 4563.504 kb on - strand, within MPMX20_04372at 4563.504 kb on - strand, within MPMX20_04372at 4563.504 kb on - strand, within MPMX20_04372at 4563.504 kb on - strand, within MPMX20_04372at 4563.504 kb on - strand, within MPMX20_04372at 4563.556 kb on - strand, within MPMX20_04372at 4563.558 kb on + strand, within MPMX20_04372at 4563.566 kb on - strand, within MPMX20_04372at 4563.639 kb on - strand, within MPMX20_04372at 4563.652 kb on + strand, within MPMX20_04372at 4563.652 kb on + strand, within MPMX20_04372at 4563.733 kb on + strand, within MPMX20_04372at 4563.741 kb on - strand, within MPMX20_04372at 4563.784 kb on + strand, within MPMX20_04372at 4563.888 kb on + strand, within MPMX20_04372at 4563.889 kb on + strand, within MPMX20_04372at 4563.889 kb on + strand, within MPMX20_04372at 4563.907 kb on - strand, within MPMX20_04372at 4563.921 kb on - strand, within MPMX20_04372at 4563.963 kb on + strand, within MPMX20_04372at 4563.963 kb on + strand, within MPMX20_04372at 4563.981 kb on - strand, within MPMX20_04372at 4563.998 kb on + strand, within MPMX20_04372at 4564.050 kb on + strand, within MPMX20_04372at 4564.051 kb on - strand, within MPMX20_04372at 4564.179 kb on - strand, within MPMX20_04372at 4564.205 kb on - strand, within MPMX20_04372at 4564.268 kb on + strand, within MPMX20_04372at 4564.296 kb on + strandat 4564.401 kb on + strandat 4564.409 kb on - strandat 4564.431 kb on + strandat 4564.462 kb on + strand, within MPMX20_04373at 4564.469 kb on + strand, within MPMX20_04373at 4564.506 kb on - strand, within MPMX20_04373at 4564.552 kb on + strand, within MPMX20_04373at 4564.552 kb on + strand, within MPMX20_04373at 4564.552 kb on + strand, within MPMX20_04373at 4564.602 kb on + strand, within MPMX20_04373at 4564.610 kb on - strand, within MPMX20_04373at 4564.699 kb on - strand, within MPMX20_04373at 4564.711 kb on + strand, within MPMX20_04373at 4564.753 kb on - strand, within MPMX20_04373at 4564.815 kb on + strand, within MPMX20_04373at 4564.911 kb on + strand, within MPMX20_04373at 4564.911 kb on + strand, within MPMX20_04373at 4564.911 kb on + strand, within MPMX20_04373at 4564.926 kb on + strand, within MPMX20_04373at 4564.934 kb on + strandat 4564.934 kb on - strandat 4564.935 kb on + strandat 4564.942 kb on - strandat 4565.080 kb on + strand, within MPMX20_04374at 4565.112 kb on + strand, within MPMX20_04374at 4565.112 kb on + strand, within MPMX20_04374at 4565.120 kb on - strand, within MPMX20_04374at 4565.127 kb on - strand, within MPMX20_04374at 4565.139 kb on + strand, within MPMX20_04374at 4565.278 kb on + strand, within MPMX20_04374at 4565.312 kb on + strandat 4565.312 kb on + strandat 4565.315 kb on - strandat 4565.320 kb on - strandat 4565.320 kb on - strandat 4565.322 kb on + strandat 4565.330 kb on - strandat 4565.350 kb on + strandat 4565.357 kb on + strandat 4565.426 kb on + strand, within MPMX20_04375at 4565.454 kb on - strand, within MPMX20_04375at 4565.473 kb on + strand, within MPMX20_04375at 4565.476 kb on - strand, within MPMX20_04375at 4565.481 kb on - strand, within MPMX20_04375at 4565.496 kb on + strand, within MPMX20_04375at 4565.504 kb on - strand, within MPMX20_04375at 4565.506 kb on + strand, within MPMX20_04375at 4565.545 kb on - strand, within MPMX20_04375at 4565.551 kb on + strand, within MPMX20_04375at 4565.575 kb on - strand, within MPMX20_04375at 4565.577 kb on - strand, within MPMX20_04375at 4565.607 kb on + strand, within MPMX20_04375at 4565.617 kb on + strand, within MPMX20_04375at 4565.627 kb on + strand, within MPMX20_04375at 4565.627 kb on + strand, within MPMX20_04375at 4565.632 kb on + strand, within MPMX20_04375at 4565.635 kb on - strand, within MPMX20_04375at 4565.640 kb on - strand, within MPMX20_04375at 4565.640 kb on - strand, within MPMX20_04375at 4565.642 kb on + strand, within MPMX20_04375at 4565.642 kb on + strand, within MPMX20_04375at 4565.659 kb on + strandat 4565.675 kb on + strandat 4565.677 kb on - strandat 4565.690 kb on + strandat 4565.704 kb on + strandat 4565.704 kb on + strandat 4565.713 kb on + strandat 4565.739 kb on - strandat 4565.739 kb on - strandat 4565.813 kb on + strandat 4565.827 kb on - strandat 4565.892 kb on + strand, within MPMX20_04376at 4565.936 kb on + strand, within MPMX20_04376at 4565.945 kb on + strand, within MPMX20_04376at 4565.984 kb on - strand, within MPMX20_04376

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075
remove
4,563,400 + MPMX20_04372 0.19 -0.6
4,563,439 + MPMX20_04372 0.23 -1.6
4,563,496 + MPMX20_04372 0.27 +0.1
4,563,496 + MPMX20_04372 0.27 -0.9
4,563,504 - MPMX20_04372 0.28 -0.8
4,563,504 - MPMX20_04372 0.28 -0.2
4,563,504 - MPMX20_04372 0.28 -0.4
4,563,504 - MPMX20_04372 0.28 +1.1
4,563,504 - MPMX20_04372 0.28 +0.5
4,563,556 - MPMX20_04372 0.32 -1.1
4,563,558 + MPMX20_04372 0.32 +1.6
4,563,566 - MPMX20_04372 0.33 -0.6
4,563,639 - MPMX20_04372 0.39 +0.0
4,563,652 + MPMX20_04372 0.40 +0.0
4,563,652 + MPMX20_04372 0.40 -0.8
4,563,733 + MPMX20_04372 0.46 +0.1
4,563,741 - MPMX20_04372 0.47 -3.3
4,563,784 + MPMX20_04372 0.51 +1.0
4,563,888 + MPMX20_04372 0.59 -0.2
4,563,889 + MPMX20_04372 0.59 +1.5
4,563,889 + MPMX20_04372 0.59 +1.4
4,563,907 - MPMX20_04372 0.61 -1.1
4,563,921 - MPMX20_04372 0.62 -2.8
4,563,963 + MPMX20_04372 0.65 +0.4
4,563,963 + MPMX20_04372 0.65 -0.2
4,563,981 - MPMX20_04372 0.67 -2.7
4,563,998 + MPMX20_04372 0.68 -0.4
4,564,050 + MPMX20_04372 0.72 +0.8
4,564,051 - MPMX20_04372 0.72 +0.1
4,564,179 - MPMX20_04372 0.83 -0.1
4,564,205 - MPMX20_04372 0.85 +0.7
4,564,268 + MPMX20_04372 0.90 +0.3
4,564,296 + +1.2
4,564,401 + +0.4
4,564,409 - -0.8
4,564,431 + -3.0
4,564,462 + MPMX20_04373 0.11 +1.2
4,564,469 + MPMX20_04373 0.13 +1.2
4,564,506 - MPMX20_04373 0.19 +0.8
4,564,552 + MPMX20_04373 0.27 +3.1
4,564,552 + MPMX20_04373 0.27 -1.1
4,564,552 + MPMX20_04373 0.27 -0.5
4,564,602 + MPMX20_04373 0.35 +0.4
4,564,610 - MPMX20_04373 0.36 -1.5
4,564,699 - MPMX20_04373 0.51 +2.4
4,564,711 + MPMX20_04373 0.53 -2.0
4,564,753 - MPMX20_04373 0.60 +2.7
4,564,815 + MPMX20_04373 0.71 +8.9
4,564,911 + MPMX20_04373 0.87 -0.5
4,564,911 + MPMX20_04373 0.87 +2.4
4,564,911 + MPMX20_04373 0.87 +0.5
4,564,926 + MPMX20_04373 0.90 +0.1
4,564,934 + -1.8
4,564,934 - +6.4
4,564,935 + +0.1
4,564,942 - -1.4
4,565,080 + MPMX20_04374 0.34 -1.9
4,565,112 + MPMX20_04374 0.41 -3.2
4,565,112 + MPMX20_04374 0.41 -1.2
4,565,120 - MPMX20_04374 0.43 -2.6
4,565,127 - MPMX20_04374 0.45 -1.6
4,565,139 + MPMX20_04374 0.48 -3.0
4,565,278 + MPMX20_04374 0.82 -1.5
4,565,312 + -1.7
4,565,312 + -1.2
4,565,315 - -3.1
4,565,320 - -4.9
4,565,320 - -1.1
4,565,322 + -3.1
4,565,330 - -3.3
4,565,350 + -0.4
4,565,357 + +0.1
4,565,426 + MPMX20_04375 0.24 -4.2
4,565,454 - MPMX20_04375 0.32 -1.2
4,565,473 + MPMX20_04375 0.38 +0.1
4,565,476 - MPMX20_04375 0.39 -2.1
4,565,481 - MPMX20_04375 0.40 +0.4
4,565,496 + MPMX20_04375 0.45 -0.9
4,565,504 - MPMX20_04375 0.47 +2.0
4,565,506 + MPMX20_04375 0.47 +0.8
4,565,545 - MPMX20_04375 0.59 -0.8
4,565,551 + MPMX20_04375 0.61 -3.9
4,565,575 - MPMX20_04375 0.68 -2.6
4,565,577 - MPMX20_04375 0.68 -3.9
4,565,607 + MPMX20_04375 0.77 -0.9
4,565,617 + MPMX20_04375 0.80 -3.6
4,565,627 + MPMX20_04375 0.83 +0.8
4,565,627 + MPMX20_04375 0.83 +0.4
4,565,632 + MPMX20_04375 0.85 -1.6
4,565,635 - MPMX20_04375 0.86 -2.7
4,565,640 - MPMX20_04375 0.87 -2.1
4,565,640 - MPMX20_04375 0.87 -1.2
4,565,642 + MPMX20_04375 0.88 -1.3
4,565,642 + MPMX20_04375 0.88 -1.7
4,565,659 + -0.8
4,565,675 + +0.4
4,565,677 - -1.7
4,565,690 + -1.5
4,565,704 + -0.4
4,565,704 + -3.0
4,565,713 + -1.6
4,565,739 - -0.8
4,565,739 - -2.0
4,565,813 + -1.6
4,565,827 - -0.2
4,565,892 + MPMX20_04376 0.13 -0.8
4,565,936 + MPMX20_04376 0.15 -2.0
4,565,945 + MPMX20_04376 0.16 +0.0
4,565,984 - MPMX20_04376 0.18 +0.2

Or see this region's nucleotide sequence