Experiment: 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04190 and MPMX20_04191 overlap by 11 nucleotides MPMX20_04191 and MPMX20_04192 are separated by 26 nucleotides MPMX20_04192 and MPMX20_04193 overlap by 29 nucleotides
MPMX20_04190: MPMX20_04190 - Threonylcarbamoyl-AMP synthase, at 4,393,550 to 4,394,122
_04190
MPMX20_04191: MPMX20_04191 - DNA topoisomerase 1, at 4,394,112 to 4,394,669
_04191
MPMX20_04192: MPMX20_04192 - Protein Smg, at 4,394,696 to 4,395,169
_04192
MPMX20_04193: MPMX20_04193 - hypothetical protein, at 4,395,141 to 4,396,280
_04193
Position (kb) 4394
4395
4396 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 4394.124 kb on + strand at 4394.124 kb on + strand at 4394.154 kb on + strand at 4394.225 kb on - strand, within MPMX20_04191 at 4394.227 kb on + strand, within MPMX20_04191 at 4394.235 kb on - strand, within MPMX20_04191 at 4394.311 kb on - strand, within MPMX20_04191 at 4394.314 kb on + strand, within MPMX20_04191 at 4394.319 kb on + strand, within MPMX20_04191 at 4394.355 kb on + strand, within MPMX20_04191 at 4394.363 kb on - strand, within MPMX20_04191 at 4394.415 kb on - strand, within MPMX20_04191 at 4394.476 kb on + strand, within MPMX20_04191 at 4394.538 kb on + strand, within MPMX20_04191 at 4394.576 kb on - strand, within MPMX20_04191 at 4394.583 kb on + strand, within MPMX20_04191 at 4394.587 kb on + strand, within MPMX20_04191 at 4394.597 kb on + strand, within MPMX20_04191 at 4394.649 kb on + strand at 4394.649 kb on + strand at 4394.667 kb on - strand at 4394.669 kb on + strand at 4394.676 kb on + strand at 4394.677 kb on - strand at 4394.717 kb on - strand at 4394.762 kb on + strand, within MPMX20_04192 at 4394.796 kb on + strand, within MPMX20_04192 at 4394.798 kb on + strand, within MPMX20_04192 at 4394.831 kb on - strand, within MPMX20_04192 at 4394.831 kb on - strand, within MPMX20_04192 at 4394.850 kb on + strand, within MPMX20_04192 at 4394.866 kb on + strand, within MPMX20_04192 at 4394.888 kb on - strand, within MPMX20_04192 at 4394.923 kb on + strand, within MPMX20_04192 at 4394.937 kb on - strand, within MPMX20_04192 at 4394.937 kb on - strand, within MPMX20_04192 at 4394.939 kb on + strand, within MPMX20_04192 at 4394.939 kb on + strand, within MPMX20_04192 at 4394.939 kb on + strand, within MPMX20_04192 at 4394.941 kb on + strand, within MPMX20_04192 at 4394.941 kb on + strand, within MPMX20_04192 at 4394.947 kb on - strand, within MPMX20_04192 at 4394.947 kb on - strand, within MPMX20_04192 at 4394.947 kb on - strand, within MPMX20_04192 at 4394.947 kb on - strand, within MPMX20_04192 at 4394.947 kb on - strand, within MPMX20_04192 at 4394.947 kb on - strand, within MPMX20_04192 at 4394.947 kb on - strand, within MPMX20_04192 at 4394.947 kb on - strand, within MPMX20_04192 at 4394.947 kb on - strand, within MPMX20_04192 at 4394.949 kb on + strand, within MPMX20_04192 at 4394.949 kb on - strand, within MPMX20_04192 at 4394.957 kb on - strand, within MPMX20_04192 at 4394.962 kb on - strand, within MPMX20_04192 at 4394.964 kb on + strand, within MPMX20_04192 at 4394.972 kb on - strand, within MPMX20_04192 at 4394.972 kb on - strand, within MPMX20_04192 at 4394.972 kb on - strand, within MPMX20_04192 at 4394.992 kb on - strand, within MPMX20_04192 at 4394.996 kb on + strand, within MPMX20_04192 at 4395.078 kb on + strand, within MPMX20_04192 at 4395.096 kb on - strand, within MPMX20_04192 at 4395.106 kb on - strand, within MPMX20_04192 at 4395.106 kb on - strand, within MPMX20_04192 at 4395.121 kb on - strand, within MPMX20_04192 at 4395.138 kb on + strand at 4395.178 kb on - strand at 4395.188 kb on + strand at 4395.201 kb on + strand at 4395.209 kb on - strand at 4395.245 kb on + strand at 4395.306 kb on - strand, within MPMX20_04193 at 4395.306 kb on - strand, within MPMX20_04193 at 4395.307 kb on - strand, within MPMX20_04193 at 4395.316 kb on + strand, within MPMX20_04193 at 4395.321 kb on + strand, within MPMX20_04193 at 4395.392 kb on + strand, within MPMX20_04193 at 4395.521 kb on - strand, within MPMX20_04193 at 4395.527 kb on + strand, within MPMX20_04193 at 4395.527 kb on + strand, within MPMX20_04193 at 4395.539 kb on + strand, within MPMX20_04193 at 4395.539 kb on + strand, within MPMX20_04193 at 4395.547 kb on - strand, within MPMX20_04193 at 4395.552 kb on - strand, within MPMX20_04193 at 4395.584 kb on - strand, within MPMX20_04193 at 4395.602 kb on + strand, within MPMX20_04193 at 4395.610 kb on - strand, within MPMX20_04193 at 4395.610 kb on - strand, within MPMX20_04193 at 4395.610 kb on - strand, within MPMX20_04193 at 4395.662 kb on + strand, within MPMX20_04193 at 4395.762 kb on + strand, within MPMX20_04193 at 4395.768 kb on - strand, within MPMX20_04193 at 4395.770 kb on + strand, within MPMX20_04193 at 4395.770 kb on + strand, within MPMX20_04193 at 4395.778 kb on - strand, within MPMX20_04193 at 4395.778 kb on - strand, within MPMX20_04193 at 4395.805 kb on - strand, within MPMX20_04193 at 4395.810 kb on - strand, within MPMX20_04193 at 4395.826 kb on + strand, within MPMX20_04193 at 4395.826 kb on + strand, within MPMX20_04193 at 4395.914 kb on + strand, within MPMX20_04193 at 4395.982 kb on + strand, within MPMX20_04193 at 4395.986 kb on - strand, within MPMX20_04193 at 4396.061 kb on + strand, within MPMX20_04193 at 4396.061 kb on + strand, within MPMX20_04193 at 4396.074 kb on - strand, within MPMX20_04193 at 4396.074 kb on - strand, within MPMX20_04193 at 4396.113 kb on - strand, within MPMX20_04193 at 4396.122 kb on + strand, within MPMX20_04193 at 4396.160 kb on + strand, within MPMX20_04193
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075 remove 4,394,124 + -1.3 4,394,124 + +0.8 4,394,154 + +0.6 4,394,225 - MPMX20_04191 0.20 -1.8 4,394,227 + MPMX20_04191 0.21 +1.4 4,394,235 - MPMX20_04191 0.22 +0.8 4,394,311 - MPMX20_04191 0.36 +0.4 4,394,314 + MPMX20_04191 0.36 +1.5 4,394,319 + MPMX20_04191 0.37 -0.5 4,394,355 + MPMX20_04191 0.44 -0.8 4,394,363 - MPMX20_04191 0.45 +1.3 4,394,415 - MPMX20_04191 0.54 -1.1 4,394,476 + MPMX20_04191 0.65 +1.6 4,394,538 + MPMX20_04191 0.76 +0.3 4,394,576 - MPMX20_04191 0.83 +0.6 4,394,583 + MPMX20_04191 0.84 -1.3 4,394,587 + MPMX20_04191 0.85 -0.4 4,394,597 + MPMX20_04191 0.87 -1.5 4,394,649 + -2.1 4,394,649 + +1.5 4,394,667 - +0.3 4,394,669 + -0.2 4,394,676 + +0.5 4,394,677 - +1.0 4,394,717 - +0.1 4,394,762 + MPMX20_04192 0.14 -2.4 4,394,796 + MPMX20_04192 0.21 -2.0 4,394,798 + MPMX20_04192 0.22 -2.2 4,394,831 - MPMX20_04192 0.28 -0.1 4,394,831 - MPMX20_04192 0.28 -0.1 4,394,850 + MPMX20_04192 0.32 -3.3 4,394,866 + MPMX20_04192 0.36 +0.4 4,394,888 - MPMX20_04192 0.41 -2.0 4,394,923 + MPMX20_04192 0.48 -0.6 4,394,937 - MPMX20_04192 0.51 +9.9 4,394,937 - MPMX20_04192 0.51 -2.5 4,394,939 + MPMX20_04192 0.51 +0.4 4,394,939 + MPMX20_04192 0.51 -2.3 4,394,939 + MPMX20_04192 0.51 +1.4 4,394,941 + MPMX20_04192 0.52 +0.8 4,394,941 + MPMX20_04192 0.52 +0.7 4,394,947 - MPMX20_04192 0.53 -2.6 4,394,947 - MPMX20_04192 0.53 -3.3 4,394,947 - MPMX20_04192 0.53 -0.5 4,394,947 - MPMX20_04192 0.53 +0.8 4,394,947 - MPMX20_04192 0.53 +0.5 4,394,947 - MPMX20_04192 0.53 +1.6 4,394,947 - MPMX20_04192 0.53 -0.6 4,394,947 - MPMX20_04192 0.53 +0.4 4,394,947 - MPMX20_04192 0.53 +0.6 4,394,949 + MPMX20_04192 0.53 +1.1 4,394,949 - MPMX20_04192 0.53 -0.6 4,394,957 - MPMX20_04192 0.55 +1.1 4,394,962 - MPMX20_04192 0.56 +0.2 4,394,964 + MPMX20_04192 0.57 -0.2 4,394,972 - MPMX20_04192 0.58 +0.3 4,394,972 - MPMX20_04192 0.58 -1.0 4,394,972 - MPMX20_04192 0.58 -2.1 4,394,992 - MPMX20_04192 0.62 -0.0 4,394,996 + MPMX20_04192 0.63 -3.3 4,395,078 + MPMX20_04192 0.81 +0.8 4,395,096 - MPMX20_04192 0.84 -1.2 4,395,106 - MPMX20_04192 0.86 -2.3 4,395,106 - MPMX20_04192 0.86 +0.3 4,395,121 - MPMX20_04192 0.90 +0.0 4,395,138 + -2.5 4,395,178 - +1.5 4,395,188 + +2.2 4,395,201 + +0.7 4,395,209 - +0.4 4,395,245 + -0.5 4,395,306 - MPMX20_04193 0.14 +2.4 4,395,306 - MPMX20_04193 0.14 -0.4 4,395,307 - MPMX20_04193 0.15 -0.8 4,395,316 + MPMX20_04193 0.15 -1.5 4,395,321 + MPMX20_04193 0.16 +0.8 4,395,392 + MPMX20_04193 0.22 -1.7 4,395,521 - MPMX20_04193 0.33 -1.4 4,395,527 + MPMX20_04193 0.34 +0.2 4,395,527 + MPMX20_04193 0.34 -1.4 4,395,539 + MPMX20_04193 0.35 -2.2 4,395,539 + MPMX20_04193 0.35 -1.1 4,395,547 - MPMX20_04193 0.36 +1.1 4,395,552 - MPMX20_04193 0.36 +0.0 4,395,584 - MPMX20_04193 0.39 -2.6 4,395,602 + MPMX20_04193 0.40 -0.6 4,395,610 - MPMX20_04193 0.41 -2.2 4,395,610 - MPMX20_04193 0.41 -0.2 4,395,610 - MPMX20_04193 0.41 +0.7 4,395,662 + MPMX20_04193 0.46 +1.0 4,395,762 + MPMX20_04193 0.54 +0.3 4,395,768 - MPMX20_04193 0.55 +0.4 4,395,770 + MPMX20_04193 0.55 +0.2 4,395,770 + MPMX20_04193 0.55 -0.2 4,395,778 - MPMX20_04193 0.56 +1.4 4,395,778 - MPMX20_04193 0.56 -1.6 4,395,805 - MPMX20_04193 0.58 -2.0 4,395,810 - MPMX20_04193 0.59 -1.0 4,395,826 + MPMX20_04193 0.60 +0.7 4,395,826 + MPMX20_04193 0.60 +1.6 4,395,914 + MPMX20_04193 0.68 -1.6 4,395,982 + MPMX20_04193 0.74 +2.4 4,395,986 - MPMX20_04193 0.74 +0.6 4,396,061 + MPMX20_04193 0.81 -0.4 4,396,061 + MPMX20_04193 0.81 +2.7 4,396,074 - MPMX20_04193 0.82 +0.0 4,396,074 - MPMX20_04193 0.82 +0.2 4,396,113 - MPMX20_04193 0.85 +0.5 4,396,122 + MPMX20_04193 0.86 +2.4 4,396,160 + MPMX20_04193 0.89 -0.2
Or see this region's nucleotide sequence