Experiment: 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03802 and MPMX20_03803 are separated by 94 nucleotides MPMX20_03803 and MPMX20_03804 are separated by 52 nucleotides MPMX20_03804 and MPMX20_03805 are separated by 39 nucleotides
MPMX20_03802: MPMX20_03802 - Protein SprT, at 4,009,358 to 4,009,855
_03802
MPMX20_03803: MPMX20_03803 - Endonuclease-1, at 4,009,950 to 4,010,657
_03803
MPMX20_03804: MPMX20_03804 - Ribosomal RNA small subunit methyltransferase E, at 4,010,710 to 4,011,441
_03804
MPMX20_03805: MPMX20_03805 - Glutathione synthetase, at 4,011,481 to 4,012,428
_03805
Position (kb)
4010
4011
4012 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4009.733 kb on + strand, within MPMX20_03802 at 4009.734 kb on - strand, within MPMX20_03802 at 4009.762 kb on + strand, within MPMX20_03802 at 4009.830 kb on + strand at 4009.943 kb on + strand at 4009.943 kb on + strand at 4009.995 kb on + strand at 4010.014 kb on - strand at 4010.015 kb on - strand at 4010.020 kb on + strand at 4010.061 kb on - strand, within MPMX20_03803 at 4010.073 kb on - strand, within MPMX20_03803 at 4010.149 kb on + strand, within MPMX20_03803 at 4010.149 kb on + strand, within MPMX20_03803 at 4010.149 kb on + strand, within MPMX20_03803 at 4010.149 kb on + strand, within MPMX20_03803 at 4010.149 kb on + strand, within MPMX20_03803 at 4010.149 kb on + strand, within MPMX20_03803 at 4010.157 kb on - strand, within MPMX20_03803 at 4010.157 kb on - strand, within MPMX20_03803 at 4010.157 kb on - strand, within MPMX20_03803 at 4010.157 kb on - strand, within MPMX20_03803 at 4010.157 kb on - strand, within MPMX20_03803 at 4010.157 kb on - strand, within MPMX20_03803 at 4010.203 kb on - strand, within MPMX20_03803 at 4010.341 kb on - strand, within MPMX20_03803 at 4010.494 kb on + strand, within MPMX20_03803 at 4010.500 kb on + strand, within MPMX20_03803 at 4010.501 kb on + strand, within MPMX20_03803 at 4010.531 kb on + strand, within MPMX20_03803 at 4010.531 kb on + strand, within MPMX20_03803 at 4010.531 kb on + strand, within MPMX20_03803 at 4010.606 kb on + strand at 4010.610 kb on + strand at 4010.612 kb on + strand at 4010.618 kb on + strand at 4010.656 kb on + strand at 4010.664 kb on - strand at 4010.727 kb on + strand at 4010.732 kb on + strand at 4010.735 kb on - strand at 4010.740 kb on - strand at 4010.740 kb on - strand at 4010.740 kb on - strand at 4010.740 kb on - strand at 4010.767 kb on - strand at 4010.767 kb on - strand at 4010.824 kb on + strand, within MPMX20_03804 at 4010.851 kb on - strand, within MPMX20_03804 at 4010.945 kb on + strand, within MPMX20_03804 at 4010.960 kb on + strand, within MPMX20_03804 at 4011.015 kb on + strand, within MPMX20_03804 at 4011.017 kb on + strand, within MPMX20_03804 at 4011.122 kb on + strand, within MPMX20_03804 at 4011.130 kb on - strand, within MPMX20_03804 at 4011.135 kb on - strand, within MPMX20_03804 at 4011.218 kb on + strand, within MPMX20_03804 at 4011.221 kb on - strand, within MPMX20_03804 at 4011.221 kb on - strand, within MPMX20_03804 at 4011.442 kb on + strand at 4011.450 kb on - strand at 4011.450 kb on - strand at 4011.489 kb on + strand at 4011.499 kb on + strand at 4011.519 kb on + strand at 4011.527 kb on - strand at 4011.527 kb on - strand at 4011.555 kb on + strand at 4011.563 kb on - strand at 4011.563 kb on - strand at 4011.575 kb on + strand at 4011.590 kb on + strand, within MPMX20_03805 at 4011.590 kb on + strand, within MPMX20_03805 at 4011.590 kb on + strand, within MPMX20_03805 at 4011.613 kb on - strand, within MPMX20_03805 at 4011.613 kb on - strand, within MPMX20_03805 at 4011.702 kb on - strand, within MPMX20_03805 at 4011.702 kb on - strand, within MPMX20_03805 at 4011.709 kb on - strand, within MPMX20_03805 at 4011.717 kb on + strand, within MPMX20_03805 at 4011.765 kb on + strand, within MPMX20_03805 at 4011.783 kb on - strand, within MPMX20_03805 at 4011.789 kb on - strand, within MPMX20_03805 at 4011.834 kb on - strand, within MPMX20_03805 at 4011.842 kb on + strand, within MPMX20_03805 at 4011.855 kb on + strand, within MPMX20_03805 at 4011.855 kb on + strand, within MPMX20_03805 at 4011.855 kb on + strand, within MPMX20_03805 at 4011.855 kb on + strand, within MPMX20_03805 at 4011.855 kb on + strand, within MPMX20_03805 at 4011.855 kb on + strand, within MPMX20_03805 at 4011.855 kb on + strand, within MPMX20_03805 at 4011.855 kb on + strand, within MPMX20_03805 at 4011.855 kb on + strand, within MPMX20_03805 at 4011.855 kb on + strand, within MPMX20_03805 at 4011.863 kb on - strand, within MPMX20_03805 at 4011.863 kb on - strand, within MPMX20_03805 at 4011.863 kb on - strand, within MPMX20_03805 at 4011.863 kb on - strand, within MPMX20_03805 at 4011.863 kb on - strand, within MPMX20_03805 at 4011.863 kb on - strand, within MPMX20_03805 at 4011.863 kb on - strand, within MPMX20_03805 at 4011.863 kb on - strand, within MPMX20_03805 at 4011.863 kb on - strand, within MPMX20_03805 at 4011.863 kb on - strand, within MPMX20_03805 at 4011.863 kb on - strand, within MPMX20_03805 at 4011.863 kb on - strand, within MPMX20_03805 at 4011.863 kb on - strand, within MPMX20_03805 at 4011.863 kb on - strand, within MPMX20_03805 at 4011.872 kb on + strand, within MPMX20_03805 at 4011.872 kb on + strand, within MPMX20_03805 at 4011.873 kb on - strand, within MPMX20_03805 at 4011.926 kb on - strand, within MPMX20_03805 at 4011.926 kb on - strand, within MPMX20_03805 at 4011.932 kb on + strand, within MPMX20_03805 at 4012.058 kb on - strand, within MPMX20_03805 at 4012.065 kb on - strand, within MPMX20_03805 at 4012.069 kb on + strand, within MPMX20_03805 at 4012.069 kb on + strand, within MPMX20_03805 at 4012.069 kb on + strand, within MPMX20_03805 at 4012.069 kb on + strand, within MPMX20_03805 at 4012.300 kb on - strand, within MPMX20_03805 at 4012.300 kb on - strand, within MPMX20_03805 at 4012.307 kb on + strand, within MPMX20_03805 at 4012.312 kb on + strand, within MPMX20_03805 at 4012.322 kb on + strand, within MPMX20_03805 at 4012.322 kb on + strand, within MPMX20_03805 at 4012.346 kb on + strand at 4012.385 kb on + strand at 4012.393 kb on - strand at 4012.395 kb on + strand at 4012.439 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075 remove 4,009,733 + MPMX20_03802 0.75 +1.5 4,009,734 - MPMX20_03802 0.76 -3.0 4,009,762 + MPMX20_03802 0.81 -0.2 4,009,830 + +0.4 4,009,943 + -0.7 4,009,943 + +1.4 4,009,995 + +0.9 4,010,014 - +1.4 4,010,015 - +0.7 4,010,020 + -1.4 4,010,061 - MPMX20_03803 0.16 +0.9 4,010,073 - MPMX20_03803 0.17 -1.7 4,010,149 + MPMX20_03803 0.28 -0.3 4,010,149 + MPMX20_03803 0.28 -0.9 4,010,149 + MPMX20_03803 0.28 +0.8 4,010,149 + MPMX20_03803 0.28 +0.8 4,010,149 + MPMX20_03803 0.28 +1.8 4,010,149 + MPMX20_03803 0.28 -2.2 4,010,157 - MPMX20_03803 0.29 +1.4 4,010,157 - MPMX20_03803 0.29 +1.2 4,010,157 - MPMX20_03803 0.29 -3.5 4,010,157 - MPMX20_03803 0.29 -0.5 4,010,157 - MPMX20_03803 0.29 +0.0 4,010,157 - MPMX20_03803 0.29 -0.4 4,010,203 - MPMX20_03803 0.36 +0.5 4,010,341 - MPMX20_03803 0.55 -0.7 4,010,494 + MPMX20_03803 0.77 -1.9 4,010,500 + MPMX20_03803 0.78 -1.0 4,010,501 + MPMX20_03803 0.78 -2.9 4,010,531 + MPMX20_03803 0.82 -2.7 4,010,531 + MPMX20_03803 0.82 +3.2 4,010,531 + MPMX20_03803 0.82 -3.2 4,010,606 + +1.9 4,010,610 + +0.8 4,010,612 + +0.0 4,010,618 + -0.4 4,010,656 + -0.6 4,010,664 - -0.3 4,010,727 + +0.4 4,010,732 + -0.2 4,010,735 - +0.8 4,010,740 - +0.5 4,010,740 - -2.5 4,010,740 - +0.6 4,010,740 - +0.4 4,010,767 - -1.9 4,010,767 - -0.2 4,010,824 + MPMX20_03804 0.16 +0.1 4,010,851 - MPMX20_03804 0.19 +0.8 4,010,945 + MPMX20_03804 0.32 -1.7 4,010,960 + MPMX20_03804 0.34 +1.7 4,011,015 + MPMX20_03804 0.42 +0.8 4,011,017 + MPMX20_03804 0.42 -0.3 4,011,122 + MPMX20_03804 0.56 -3.5 4,011,130 - MPMX20_03804 0.57 +2.1 4,011,135 - MPMX20_03804 0.58 +1.4 4,011,218 + MPMX20_03804 0.69 +0.7 4,011,221 - MPMX20_03804 0.70 +0.0 4,011,221 - MPMX20_03804 0.70 -2.2 4,011,442 + -0.6 4,011,450 - +1.7 4,011,450 - +1.1 4,011,489 + +0.1 4,011,499 + +0.7 4,011,519 + +1.8 4,011,527 - +2.4 4,011,527 - +0.3 4,011,555 + +0.1 4,011,563 - +0.8 4,011,563 - -2.4 4,011,575 + -0.8 4,011,590 + MPMX20_03805 0.11 +2.1 4,011,590 + MPMX20_03805 0.11 +2.9 4,011,590 + MPMX20_03805 0.11 +0.0 4,011,613 - MPMX20_03805 0.14 -1.5 4,011,613 - MPMX20_03805 0.14 -1.7 4,011,702 - MPMX20_03805 0.23 +1.1 4,011,702 - MPMX20_03805 0.23 -2.1 4,011,709 - MPMX20_03805 0.24 +1.3 4,011,717 + MPMX20_03805 0.25 -1.0 4,011,765 + MPMX20_03805 0.30 -2.2 4,011,783 - MPMX20_03805 0.32 +0.1 4,011,789 - MPMX20_03805 0.32 -0.7 4,011,834 - MPMX20_03805 0.37 -1.5 4,011,842 + MPMX20_03805 0.38 -0.2 4,011,855 + MPMX20_03805 0.39 -0.7 4,011,855 + MPMX20_03805 0.39 -0.8 4,011,855 + MPMX20_03805 0.39 +0.3 4,011,855 + MPMX20_03805 0.39 -0.9 4,011,855 + MPMX20_03805 0.39 -0.4 4,011,855 + MPMX20_03805 0.39 +1.0 4,011,855 + MPMX20_03805 0.39 +0.8 4,011,855 + MPMX20_03805 0.39 +0.3 4,011,855 + MPMX20_03805 0.39 -1.2 4,011,855 + MPMX20_03805 0.39 -3.3 4,011,863 - MPMX20_03805 0.40 -1.8 4,011,863 - MPMX20_03805 0.40 +3.0 4,011,863 - MPMX20_03805 0.40 +0.4 4,011,863 - MPMX20_03805 0.40 -2.5 4,011,863 - MPMX20_03805 0.40 +1.6 4,011,863 - MPMX20_03805 0.40 +1.4 4,011,863 - MPMX20_03805 0.40 -3.3 4,011,863 - MPMX20_03805 0.40 +0.7 4,011,863 - MPMX20_03805 0.40 -0.9 4,011,863 - MPMX20_03805 0.40 +1.1 4,011,863 - MPMX20_03805 0.40 +0.4 4,011,863 - MPMX20_03805 0.40 -3.1 4,011,863 - MPMX20_03805 0.40 +0.9 4,011,863 - MPMX20_03805 0.40 -0.6 4,011,872 + MPMX20_03805 0.41 +4.4 4,011,872 + MPMX20_03805 0.41 -0.6 4,011,873 - MPMX20_03805 0.41 -0.3 4,011,926 - MPMX20_03805 0.47 -0.4 4,011,926 - MPMX20_03805 0.47 -1.9 4,011,932 + MPMX20_03805 0.48 -0.9 4,012,058 - MPMX20_03805 0.61 -1.4 4,012,065 - MPMX20_03805 0.62 -1.3 4,012,069 + MPMX20_03805 0.62 +0.0 4,012,069 + MPMX20_03805 0.62 -1.2 4,012,069 + MPMX20_03805 0.62 +1.4 4,012,069 + MPMX20_03805 0.62 -1.9 4,012,300 - MPMX20_03805 0.86 +2.8 4,012,300 - MPMX20_03805 0.86 -1.8 4,012,307 + MPMX20_03805 0.87 +0.1 4,012,312 + MPMX20_03805 0.88 -0.4 4,012,322 + MPMX20_03805 0.89 -0.4 4,012,322 + MPMX20_03805 0.89 +1.0 4,012,346 + -0.2 4,012,385 + -1.4 4,012,393 - -3.1 4,012,395 + -0.7 4,012,439 - +0.6
Or see this region's nucleotide sequence