Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03787

Experiment: 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03785 and MPMX20_03786 are separated by 9 nucleotidesMPMX20_03786 and MPMX20_03787 overlap by 17 nucleotidesMPMX20_03787 and MPMX20_03788 are separated by 9 nucleotidesMPMX20_03788 and MPMX20_03789 are separated by 10 nucleotides MPMX20_03785: MPMX20_03785 - L-aspartate dehydrogenase, at 3,991,278 to 3,992,048 _03785 MPMX20_03786: MPMX20_03786 - putative oxidoreductase, at 3,992,058 to 3,992,852 _03786 MPMX20_03787: MPMX20_03787 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 3,992,836 to 3,993,606 _03787 MPMX20_03788: MPMX20_03788 - hypothetical protein, at 3,993,616 to 3,994,146 _03788 MPMX20_03789: MPMX20_03789 - putative sulfoacetate transporter SauU, at 3,994,157 to 3,995,413 _03789 Position (kb) 3992 3993 3994Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3991.865 kb on + strand, within MPMX20_03785at 3991.901 kb on + strand, within MPMX20_03785at 3991.990 kb on - strandat 3992.012 kb on - strandat 3992.063 kb on + strandat 3992.136 kb on - strandat 3992.141 kb on - strand, within MPMX20_03786at 3992.314 kb on + strand, within MPMX20_03786at 3992.314 kb on + strand, within MPMX20_03786at 3992.322 kb on - strand, within MPMX20_03786at 3992.358 kb on - strand, within MPMX20_03786at 3992.385 kb on + strand, within MPMX20_03786at 3992.430 kb on + strand, within MPMX20_03786at 3992.454 kb on + strand, within MPMX20_03786at 3992.454 kb on + strand, within MPMX20_03786at 3992.473 kb on - strand, within MPMX20_03786at 3992.490 kb on - strand, within MPMX20_03786at 3992.492 kb on + strand, within MPMX20_03786at 3992.557 kb on + strand, within MPMX20_03786at 3992.557 kb on + strand, within MPMX20_03786at 3992.557 kb on + strand, within MPMX20_03786at 3992.565 kb on - strand, within MPMX20_03786at 3992.616 kb on + strand, within MPMX20_03786at 3992.628 kb on + strand, within MPMX20_03786at 3992.628 kb on + strand, within MPMX20_03786at 3992.636 kb on - strand, within MPMX20_03786at 3992.642 kb on - strand, within MPMX20_03786at 3992.642 kb on - strand, within MPMX20_03786at 3992.819 kb on + strandat 3992.859 kb on + strandat 3992.859 kb on + strandat 3992.954 kb on + strand, within MPMX20_03787at 3992.954 kb on + strand, within MPMX20_03787at 3992.954 kb on + strand, within MPMX20_03787at 3992.962 kb on - strand, within MPMX20_03787at 3992.962 kb on - strand, within MPMX20_03787at 3992.972 kb on + strand, within MPMX20_03787at 3992.980 kb on - strand, within MPMX20_03787at 3992.980 kb on - strand, within MPMX20_03787at 3992.980 kb on - strand, within MPMX20_03787at 3992.989 kb on - strand, within MPMX20_03787at 3992.991 kb on + strand, within MPMX20_03787at 3992.991 kb on + strand, within MPMX20_03787at 3992.991 kb on + strand, within MPMX20_03787at 3992.991 kb on + strand, within MPMX20_03787at 3992.999 kb on - strand, within MPMX20_03787at 3993.029 kb on - strand, within MPMX20_03787at 3993.060 kb on - strand, within MPMX20_03787at 3993.060 kb on - strand, within MPMX20_03787at 3993.233 kb on + strand, within MPMX20_03787at 3993.233 kb on + strand, within MPMX20_03787at 3993.233 kb on + strand, within MPMX20_03787at 3993.233 kb on + strand, within MPMX20_03787at 3993.241 kb on - strand, within MPMX20_03787at 3993.241 kb on - strand, within MPMX20_03787at 3993.241 kb on - strand, within MPMX20_03787at 3993.260 kb on - strand, within MPMX20_03787at 3993.268 kb on + strand, within MPMX20_03787at 3993.269 kb on + strand, within MPMX20_03787at 3993.277 kb on - strand, within MPMX20_03787at 3993.430 kb on - strand, within MPMX20_03787at 3993.434 kb on + strand, within MPMX20_03787at 3993.506 kb on - strand, within MPMX20_03787at 3993.522 kb on + strand, within MPMX20_03787at 3993.530 kb on - strandat 3993.564 kb on + strandat 3993.614 kb on + strandat 3993.637 kb on - strandat 3993.650 kb on + strandat 3993.658 kb on + strandat 3993.680 kb on + strand, within MPMX20_03788at 3993.705 kb on - strand, within MPMX20_03788at 3993.705 kb on - strand, within MPMX20_03788at 3993.747 kb on + strand, within MPMX20_03788at 3993.762 kb on + strand, within MPMX20_03788at 3993.765 kb on - strand, within MPMX20_03788at 3993.765 kb on - strand, within MPMX20_03788at 3993.800 kb on - strand, within MPMX20_03788at 3993.846 kb on + strand, within MPMX20_03788at 3993.867 kb on - strand, within MPMX20_03788at 3993.957 kb on - strand, within MPMX20_03788at 3993.974 kb on + strand, within MPMX20_03788at 3994.101 kb on - strandat 3994.114 kb on - strandat 3994.155 kb on + strandat 3994.161 kb on - strandat 3994.164 kb on + strandat 3994.172 kb on - strandat 3994.172 kb on - strandat 3994.172 kb on - strandat 3994.243 kb on + strandat 3994.251 kb on - strandat 3994.336 kb on + strand, within MPMX20_03789at 3994.383 kb on + strand, within MPMX20_03789at 3994.401 kb on - strand, within MPMX20_03789at 3994.401 kb on - strand, within MPMX20_03789at 3994.401 kb on - strand, within MPMX20_03789at 3994.409 kb on + strand, within MPMX20_03789at 3994.463 kb on + strand, within MPMX20_03789at 3994.463 kb on + strand, within MPMX20_03789at 3994.471 kb on - strand, within MPMX20_03789at 3994.471 kb on - strand, within MPMX20_03789at 3994.499 kb on - strand, within MPMX20_03789at 3994.548 kb on + strand, within MPMX20_03789at 3994.568 kb on - strand, within MPMX20_03789

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075
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3,991,865 + MPMX20_03785 0.76 -2.1
3,991,901 + MPMX20_03785 0.81 -0.6
3,991,990 - -0.5
3,992,012 - +0.5
3,992,063 + +3.0
3,992,136 - +3.3
3,992,141 - MPMX20_03786 0.10 +1.1
3,992,314 + MPMX20_03786 0.32 +1.0
3,992,314 + MPMX20_03786 0.32 +0.8
3,992,322 - MPMX20_03786 0.33 +1.4
3,992,358 - MPMX20_03786 0.38 +0.1
3,992,385 + MPMX20_03786 0.41 -1.6
3,992,430 + MPMX20_03786 0.47 +0.1
3,992,454 + MPMX20_03786 0.50 -1.1
3,992,454 + MPMX20_03786 0.50 -0.1
3,992,473 - MPMX20_03786 0.52 +0.8
3,992,490 - MPMX20_03786 0.54 +0.5
3,992,492 + MPMX20_03786 0.55 -0.6
3,992,557 + MPMX20_03786 0.63 +0.8
3,992,557 + MPMX20_03786 0.63 +1.1
3,992,557 + MPMX20_03786 0.63 +0.7
3,992,565 - MPMX20_03786 0.64 +1.3
3,992,616 + MPMX20_03786 0.70 +1.2
3,992,628 + MPMX20_03786 0.72 -2.4
3,992,628 + MPMX20_03786 0.72 +0.7
3,992,636 - MPMX20_03786 0.73 -0.4
3,992,642 - MPMX20_03786 0.73 -0.6
3,992,642 - MPMX20_03786 0.73 -0.2
3,992,819 + -1.2
3,992,859 + -2.7
3,992,859 + +1.4
3,992,954 + MPMX20_03787 0.15 -1.9
3,992,954 + MPMX20_03787 0.15 -1.4
3,992,954 + MPMX20_03787 0.15 -0.2
3,992,962 - MPMX20_03787 0.16 -0.0
3,992,962 - MPMX20_03787 0.16 -2.7
3,992,972 + MPMX20_03787 0.18 -1.9
3,992,980 - MPMX20_03787 0.19 +0.1
3,992,980 - MPMX20_03787 0.19 -0.1
3,992,980 - MPMX20_03787 0.19 -0.6
3,992,989 - MPMX20_03787 0.20 -0.9
3,992,991 + MPMX20_03787 0.20 -2.0
3,992,991 + MPMX20_03787 0.20 -0.6
3,992,991 + MPMX20_03787 0.20 -2.4
3,992,991 + MPMX20_03787 0.20 +0.2
3,992,999 - MPMX20_03787 0.21 -0.9
3,993,029 - MPMX20_03787 0.25 +2.3
3,993,060 - MPMX20_03787 0.29 -0.2
3,993,060 - MPMX20_03787 0.29 -0.3
3,993,233 + MPMX20_03787 0.51 -1.9
3,993,233 + MPMX20_03787 0.51 -2.4
3,993,233 + MPMX20_03787 0.51 -3.9
3,993,233 + MPMX20_03787 0.51 -0.3
3,993,241 - MPMX20_03787 0.53 -3.5
3,993,241 - MPMX20_03787 0.53 +0.1
3,993,241 - MPMX20_03787 0.53 -0.6
3,993,260 - MPMX20_03787 0.55 -1.0
3,993,268 + MPMX20_03787 0.56 -0.7
3,993,269 + MPMX20_03787 0.56 -0.6
3,993,277 - MPMX20_03787 0.57 -0.9
3,993,430 - MPMX20_03787 0.77 +1.4
3,993,434 + MPMX20_03787 0.78 -0.9
3,993,506 - MPMX20_03787 0.87 -2.8
3,993,522 + MPMX20_03787 0.89 +0.8
3,993,530 - -0.7
3,993,564 + +1.8
3,993,614 + +0.5
3,993,637 - +0.4
3,993,650 + -1.0
3,993,658 + -1.3
3,993,680 + MPMX20_03788 0.12 -1.4
3,993,705 - MPMX20_03788 0.17 -1.1
3,993,705 - MPMX20_03788 0.17 -1.9
3,993,747 + MPMX20_03788 0.25 +2.2
3,993,762 + MPMX20_03788 0.27 +0.4
3,993,765 - MPMX20_03788 0.28 -2.2
3,993,765 - MPMX20_03788 0.28 -1.4
3,993,800 - MPMX20_03788 0.35 -0.2
3,993,846 + MPMX20_03788 0.43 -1.7
3,993,867 - MPMX20_03788 0.47 -0.5
3,993,957 - MPMX20_03788 0.64 +0.4
3,993,974 + MPMX20_03788 0.67 +1.6
3,994,101 - -2.7
3,994,114 - -1.0
3,994,155 + -0.3
3,994,161 - -0.9
3,994,164 + +0.4
3,994,172 - -1.7
3,994,172 - -1.4
3,994,172 - -0.2
3,994,243 + -2.7
3,994,251 - +0.3
3,994,336 + MPMX20_03789 0.14 -2.2
3,994,383 + MPMX20_03789 0.18 -1.0
3,994,401 - MPMX20_03789 0.19 -0.1
3,994,401 - MPMX20_03789 0.19 -1.6
3,994,401 - MPMX20_03789 0.19 +0.9
3,994,409 + MPMX20_03789 0.20 -2.2
3,994,463 + MPMX20_03789 0.24 +0.8
3,994,463 + MPMX20_03789 0.24 +0.6
3,994,471 - MPMX20_03789 0.25 -0.7
3,994,471 - MPMX20_03789 0.25 -0.2
3,994,499 - MPMX20_03789 0.27 +0.4
3,994,548 + MPMX20_03789 0.31 -2.8
3,994,568 - MPMX20_03789 0.33 +0.5

Or see this region's nucleotide sequence