Experiment: 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03785 and MPMX20_03786 are separated by 9 nucleotides MPMX20_03786 and MPMX20_03787 overlap by 17 nucleotides MPMX20_03787 and MPMX20_03788 are separated by 9 nucleotides MPMX20_03788 and MPMX20_03789 are separated by 10 nucleotides
MPMX20_03785: MPMX20_03785 - L-aspartate dehydrogenase, at 3,991,278 to 3,992,048
_03785
MPMX20_03786: MPMX20_03786 - putative oxidoreductase, at 3,992,058 to 3,992,852
_03786
MPMX20_03787: MPMX20_03787 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 3,992,836 to 3,993,606
_03787
MPMX20_03788: MPMX20_03788 - hypothetical protein, at 3,993,616 to 3,994,146
_03788
MPMX20_03789: MPMX20_03789 - putative sulfoacetate transporter SauU, at 3,994,157 to 3,995,413
_03789
Position (kb)
3992
3993
3994 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3991.865 kb on + strand, within MPMX20_03785 at 3991.901 kb on + strand, within MPMX20_03785 at 3991.990 kb on - strand at 3992.012 kb on - strand at 3992.063 kb on + strand at 3992.136 kb on - strand at 3992.141 kb on - strand, within MPMX20_03786 at 3992.314 kb on + strand, within MPMX20_03786 at 3992.314 kb on + strand, within MPMX20_03786 at 3992.322 kb on - strand, within MPMX20_03786 at 3992.358 kb on - strand, within MPMX20_03786 at 3992.385 kb on + strand, within MPMX20_03786 at 3992.430 kb on + strand, within MPMX20_03786 at 3992.454 kb on + strand, within MPMX20_03786 at 3992.454 kb on + strand, within MPMX20_03786 at 3992.473 kb on - strand, within MPMX20_03786 at 3992.490 kb on - strand, within MPMX20_03786 at 3992.492 kb on + strand, within MPMX20_03786 at 3992.557 kb on + strand, within MPMX20_03786 at 3992.557 kb on + strand, within MPMX20_03786 at 3992.557 kb on + strand, within MPMX20_03786 at 3992.565 kb on - strand, within MPMX20_03786 at 3992.616 kb on + strand, within MPMX20_03786 at 3992.628 kb on + strand, within MPMX20_03786 at 3992.628 kb on + strand, within MPMX20_03786 at 3992.636 kb on - strand, within MPMX20_03786 at 3992.642 kb on - strand, within MPMX20_03786 at 3992.642 kb on - strand, within MPMX20_03786 at 3992.819 kb on + strand at 3992.859 kb on + strand at 3992.859 kb on + strand at 3992.954 kb on + strand, within MPMX20_03787 at 3992.954 kb on + strand, within MPMX20_03787 at 3992.954 kb on + strand, within MPMX20_03787 at 3992.962 kb on - strand, within MPMX20_03787 at 3992.962 kb on - strand, within MPMX20_03787 at 3992.972 kb on + strand, within MPMX20_03787 at 3992.980 kb on - strand, within MPMX20_03787 at 3992.980 kb on - strand, within MPMX20_03787 at 3992.980 kb on - strand, within MPMX20_03787 at 3992.989 kb on - strand, within MPMX20_03787 at 3992.991 kb on + strand, within MPMX20_03787 at 3992.991 kb on + strand, within MPMX20_03787 at 3992.991 kb on + strand, within MPMX20_03787 at 3992.991 kb on + strand, within MPMX20_03787 at 3992.999 kb on - strand, within MPMX20_03787 at 3993.029 kb on - strand, within MPMX20_03787 at 3993.060 kb on - strand, within MPMX20_03787 at 3993.060 kb on - strand, within MPMX20_03787 at 3993.233 kb on + strand, within MPMX20_03787 at 3993.233 kb on + strand, within MPMX20_03787 at 3993.233 kb on + strand, within MPMX20_03787 at 3993.233 kb on + strand, within MPMX20_03787 at 3993.241 kb on - strand, within MPMX20_03787 at 3993.241 kb on - strand, within MPMX20_03787 at 3993.241 kb on - strand, within MPMX20_03787 at 3993.260 kb on - strand, within MPMX20_03787 at 3993.268 kb on + strand, within MPMX20_03787 at 3993.269 kb on + strand, within MPMX20_03787 at 3993.277 kb on - strand, within MPMX20_03787 at 3993.430 kb on - strand, within MPMX20_03787 at 3993.434 kb on + strand, within MPMX20_03787 at 3993.506 kb on - strand, within MPMX20_03787 at 3993.522 kb on + strand, within MPMX20_03787 at 3993.530 kb on - strand at 3993.564 kb on + strand at 3993.614 kb on + strand at 3993.637 kb on - strand at 3993.650 kb on + strand at 3993.658 kb on + strand at 3993.680 kb on + strand, within MPMX20_03788 at 3993.705 kb on - strand, within MPMX20_03788 at 3993.705 kb on - strand, within MPMX20_03788 at 3993.747 kb on + strand, within MPMX20_03788 at 3993.762 kb on + strand, within MPMX20_03788 at 3993.765 kb on - strand, within MPMX20_03788 at 3993.765 kb on - strand, within MPMX20_03788 at 3993.800 kb on - strand, within MPMX20_03788 at 3993.846 kb on + strand, within MPMX20_03788 at 3993.867 kb on - strand, within MPMX20_03788 at 3993.957 kb on - strand, within MPMX20_03788 at 3993.974 kb on + strand, within MPMX20_03788 at 3994.101 kb on - strand at 3994.114 kb on - strand at 3994.155 kb on + strand at 3994.161 kb on - strand at 3994.164 kb on + strand at 3994.172 kb on - strand at 3994.172 kb on - strand at 3994.172 kb on - strand at 3994.243 kb on + strand at 3994.251 kb on - strand at 3994.336 kb on + strand, within MPMX20_03789 at 3994.383 kb on + strand, within MPMX20_03789 at 3994.401 kb on - strand, within MPMX20_03789 at 3994.401 kb on - strand, within MPMX20_03789 at 3994.401 kb on - strand, within MPMX20_03789 at 3994.409 kb on + strand, within MPMX20_03789 at 3994.463 kb on + strand, within MPMX20_03789 at 3994.463 kb on + strand, within MPMX20_03789 at 3994.471 kb on - strand, within MPMX20_03789 at 3994.471 kb on - strand, within MPMX20_03789 at 3994.499 kb on - strand, within MPMX20_03789 at 3994.548 kb on + strand, within MPMX20_03789 at 3994.568 kb on - strand, within MPMX20_03789
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075 remove 3,991,865 + MPMX20_03785 0.76 -2.1 3,991,901 + MPMX20_03785 0.81 -0.6 3,991,990 - -0.5 3,992,012 - +0.5 3,992,063 + +3.0 3,992,136 - +3.3 3,992,141 - MPMX20_03786 0.10 +1.1 3,992,314 + MPMX20_03786 0.32 +1.0 3,992,314 + MPMX20_03786 0.32 +0.8 3,992,322 - MPMX20_03786 0.33 +1.4 3,992,358 - MPMX20_03786 0.38 +0.1 3,992,385 + MPMX20_03786 0.41 -1.6 3,992,430 + MPMX20_03786 0.47 +0.1 3,992,454 + MPMX20_03786 0.50 -1.1 3,992,454 + MPMX20_03786 0.50 -0.1 3,992,473 - MPMX20_03786 0.52 +0.8 3,992,490 - MPMX20_03786 0.54 +0.5 3,992,492 + MPMX20_03786 0.55 -0.6 3,992,557 + MPMX20_03786 0.63 +0.8 3,992,557 + MPMX20_03786 0.63 +1.1 3,992,557 + MPMX20_03786 0.63 +0.7 3,992,565 - MPMX20_03786 0.64 +1.3 3,992,616 + MPMX20_03786 0.70 +1.2 3,992,628 + MPMX20_03786 0.72 -2.4 3,992,628 + MPMX20_03786 0.72 +0.7 3,992,636 - MPMX20_03786 0.73 -0.4 3,992,642 - MPMX20_03786 0.73 -0.6 3,992,642 - MPMX20_03786 0.73 -0.2 3,992,819 + -1.2 3,992,859 + -2.7 3,992,859 + +1.4 3,992,954 + MPMX20_03787 0.15 -1.9 3,992,954 + MPMX20_03787 0.15 -1.4 3,992,954 + MPMX20_03787 0.15 -0.2 3,992,962 - MPMX20_03787 0.16 -0.0 3,992,962 - MPMX20_03787 0.16 -2.7 3,992,972 + MPMX20_03787 0.18 -1.9 3,992,980 - MPMX20_03787 0.19 +0.1 3,992,980 - MPMX20_03787 0.19 -0.1 3,992,980 - MPMX20_03787 0.19 -0.6 3,992,989 - MPMX20_03787 0.20 -0.9 3,992,991 + MPMX20_03787 0.20 -2.0 3,992,991 + MPMX20_03787 0.20 -0.6 3,992,991 + MPMX20_03787 0.20 -2.4 3,992,991 + MPMX20_03787 0.20 +0.2 3,992,999 - MPMX20_03787 0.21 -0.9 3,993,029 - MPMX20_03787 0.25 +2.3 3,993,060 - MPMX20_03787 0.29 -0.2 3,993,060 - MPMX20_03787 0.29 -0.3 3,993,233 + MPMX20_03787 0.51 -1.9 3,993,233 + MPMX20_03787 0.51 -2.4 3,993,233 + MPMX20_03787 0.51 -3.9 3,993,233 + MPMX20_03787 0.51 -0.3 3,993,241 - MPMX20_03787 0.53 -3.5 3,993,241 - MPMX20_03787 0.53 +0.1 3,993,241 - MPMX20_03787 0.53 -0.6 3,993,260 - MPMX20_03787 0.55 -1.0 3,993,268 + MPMX20_03787 0.56 -0.7 3,993,269 + MPMX20_03787 0.56 -0.6 3,993,277 - MPMX20_03787 0.57 -0.9 3,993,430 - MPMX20_03787 0.77 +1.4 3,993,434 + MPMX20_03787 0.78 -0.9 3,993,506 - MPMX20_03787 0.87 -2.8 3,993,522 + MPMX20_03787 0.89 +0.8 3,993,530 - -0.7 3,993,564 + +1.8 3,993,614 + +0.5 3,993,637 - +0.4 3,993,650 + -1.0 3,993,658 + -1.3 3,993,680 + MPMX20_03788 0.12 -1.4 3,993,705 - MPMX20_03788 0.17 -1.1 3,993,705 - MPMX20_03788 0.17 -1.9 3,993,747 + MPMX20_03788 0.25 +2.2 3,993,762 + MPMX20_03788 0.27 +0.4 3,993,765 - MPMX20_03788 0.28 -2.2 3,993,765 - MPMX20_03788 0.28 -1.4 3,993,800 - MPMX20_03788 0.35 -0.2 3,993,846 + MPMX20_03788 0.43 -1.7 3,993,867 - MPMX20_03788 0.47 -0.5 3,993,957 - MPMX20_03788 0.64 +0.4 3,993,974 + MPMX20_03788 0.67 +1.6 3,994,101 - -2.7 3,994,114 - -1.0 3,994,155 + -0.3 3,994,161 - -0.9 3,994,164 + +0.4 3,994,172 - -1.7 3,994,172 - -1.4 3,994,172 - -0.2 3,994,243 + -2.7 3,994,251 - +0.3 3,994,336 + MPMX20_03789 0.14 -2.2 3,994,383 + MPMX20_03789 0.18 -1.0 3,994,401 - MPMX20_03789 0.19 -0.1 3,994,401 - MPMX20_03789 0.19 -1.6 3,994,401 - MPMX20_03789 0.19 +0.9 3,994,409 + MPMX20_03789 0.20 -2.2 3,994,463 + MPMX20_03789 0.24 +0.8 3,994,463 + MPMX20_03789 0.24 +0.6 3,994,471 - MPMX20_03789 0.25 -0.7 3,994,471 - MPMX20_03789 0.25 -0.2 3,994,499 - MPMX20_03789 0.27 +0.4 3,994,548 + MPMX20_03789 0.31 -2.8 3,994,568 - MPMX20_03789 0.33 +0.5
Or see this region's nucleotide sequence