Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03570

Experiment: 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03568 and MPMX20_03569 are separated by 83 nucleotidesMPMX20_03569 and MPMX20_03570 overlap by 4 nucleotidesMPMX20_03570 and MPMX20_03571 are separated by 264 nucleotidesMPMX20_03571 and MPMX20_03572 are separated by 158 nucleotidesMPMX20_03572 and MPMX20_03573 are separated by 161 nucleotidesMPMX20_03573 and MPMX20_03574 are separated by 52 nucleotidesMPMX20_03574 and MPMX20_03575 overlap by 61 nucleotidesMPMX20_03575 and MPMX20_03576 are separated by 4 nucleotides MPMX20_03568: MPMX20_03568 - Glutamate--cysteine ligase, at 3,762,420 to 3,763,964 _03568 MPMX20_03569: MPMX20_03569 - Inner membrane protein YqaA, at 3,764,048 to 3,764,476 _03569 MPMX20_03570: MPMX20_03570 - Fructose-1-phosphate phosphatase YqaB, at 3,764,473 to 3,765,039 _03570 MPMX20_03571: MPMX20_03571 - tRNA-Arg, at 3,765,304 to 3,765,380 _03571 MPMX20_03572: MPMX20_03572 - tRNA-Arg, at 3,765,539 to 3,765,615 _03572 MPMX20_03573: MPMX20_03573 - tRNA-Arg, at 3,765,777 to 3,765,853 _03573 MPMX20_03574: MPMX20_03574 - tRNA-Arg, at 3,765,906 to 3,765,978 _03574 MPMX20_03575: MPMX20_03575 - tRNA-Arg, at 3,765,918 to 3,765,994 _03575 MPMX20_03576: MPMX20_03576 - tRNA-Ser, at 3,765,999 to 3,766,091 _03576 Position (kb) 3764 3765 3766Strain fitness (log2 ratio) -2 -1 0 1 2at 3763.517 kb on - strand, within MPMX20_03568at 3763.626 kb on + strand, within MPMX20_03568at 3763.634 kb on - strand, within MPMX20_03568at 3763.645 kb on - strand, within MPMX20_03568at 3763.818 kb on + strandat 3763.826 kb on - strandat 3763.851 kb on + strandat 3763.851 kb on + strandat 3763.882 kb on - strandat 3763.906 kb on - strandat 3763.971 kb on - strandat 3764.005 kb on - strandat 3764.060 kb on + strandat 3764.060 kb on + strandat 3764.061 kb on + strandat 3764.061 kb on + strandat 3764.061 kb on + strandat 3764.068 kb on - strandat 3764.069 kb on - strandat 3764.069 kb on - strandat 3764.069 kb on - strandat 3764.069 kb on - strandat 3764.074 kb on + strandat 3764.082 kb on - strandat 3764.139 kb on + strand, within MPMX20_03569at 3764.145 kb on - strand, within MPMX20_03569at 3764.247 kb on + strand, within MPMX20_03569at 3764.248 kb on - strand, within MPMX20_03569at 3764.286 kb on - strand, within MPMX20_03569at 3764.286 kb on - strand, within MPMX20_03569at 3764.296 kb on + strand, within MPMX20_03569at 3764.314 kb on - strand, within MPMX20_03569at 3764.314 kb on - strand, within MPMX20_03569at 3764.322 kb on + strand, within MPMX20_03569at 3764.352 kb on + strand, within MPMX20_03569at 3764.357 kb on + strand, within MPMX20_03569at 3764.368 kb on + strand, within MPMX20_03569at 3764.372 kb on + strand, within MPMX20_03569at 3764.479 kb on - strandat 3764.484 kb on - strandat 3764.560 kb on - strand, within MPMX20_03570at 3764.580 kb on + strand, within MPMX20_03570at 3764.588 kb on - strand, within MPMX20_03570at 3764.667 kb on + strand, within MPMX20_03570at 3764.675 kb on - strand, within MPMX20_03570at 3764.675 kb on - strand, within MPMX20_03570at 3764.675 kb on - strand, within MPMX20_03570at 3764.675 kb on - strand, within MPMX20_03570at 3764.675 kb on - strand, within MPMX20_03570at 3764.708 kb on - strand, within MPMX20_03570at 3764.738 kb on - strand, within MPMX20_03570at 3764.783 kb on - strand, within MPMX20_03570at 3764.957 kb on + strand, within MPMX20_03570at 3764.960 kb on - strand, within MPMX20_03570at 3764.986 kb on + strandat 3764.994 kb on - strandat 3764.994 kb on - strandat 3764.994 kb on - strandat 3765.020 kb on + strandat 3765.022 kb on + strandat 3765.030 kb on - strandat 3765.191 kb on - strandat 3765.355 kb on + strand, within MPMX20_03571at 3765.473 kb on - strandat 3765.473 kb on - strandat 3765.473 kb on - strandat 3765.475 kb on + strandat 3765.515 kb on + strandat 3765.528 kb on - strandat 3765.628 kb on - strandat 3765.647 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075
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3,763,517 - MPMX20_03568 0.71 -0.6
3,763,626 + MPMX20_03568 0.78 +0.4
3,763,634 - MPMX20_03568 0.79 -2.2
3,763,645 - MPMX20_03568 0.79 -1.4
3,763,818 + +1.9
3,763,826 - -0.9
3,763,851 + +0.4
3,763,851 + +0.1
3,763,882 - +0.8
3,763,906 - -1.3
3,763,971 - +1.4
3,764,005 - -0.6
3,764,060 + +0.4
3,764,060 + +0.5
3,764,061 + -1.0
3,764,061 + +1.2
3,764,061 + +1.8
3,764,068 - +0.1
3,764,069 - -0.3
3,764,069 - +2.0
3,764,069 - -1.4
3,764,069 - +1.6
3,764,074 + -0.4
3,764,082 - -0.4
3,764,139 + MPMX20_03569 0.21 -0.5
3,764,145 - MPMX20_03569 0.23 -0.4
3,764,247 + MPMX20_03569 0.46 -1.0
3,764,248 - MPMX20_03569 0.47 -0.6
3,764,286 - MPMX20_03569 0.55 -0.2
3,764,286 - MPMX20_03569 0.55 -0.3
3,764,296 + MPMX20_03569 0.58 -0.5
3,764,314 - MPMX20_03569 0.62 +1.4
3,764,314 - MPMX20_03569 0.62 +0.1
3,764,322 + MPMX20_03569 0.64 -1.5
3,764,352 + MPMX20_03569 0.71 +0.1
3,764,357 + MPMX20_03569 0.72 +1.7
3,764,368 + MPMX20_03569 0.75 +0.8
3,764,372 + MPMX20_03569 0.76 -2.7
3,764,479 - +1.5
3,764,484 - -0.1
3,764,560 - MPMX20_03570 0.15 +2.4
3,764,580 + MPMX20_03570 0.19 -2.0
3,764,588 - MPMX20_03570 0.20 -0.3
3,764,667 + MPMX20_03570 0.34 -0.6
3,764,675 - MPMX20_03570 0.36 +1.2
3,764,675 - MPMX20_03570 0.36 -1.9
3,764,675 - MPMX20_03570 0.36 -0.5
3,764,675 - MPMX20_03570 0.36 -0.8
3,764,675 - MPMX20_03570 0.36 -2.3
3,764,708 - MPMX20_03570 0.41 -0.1
3,764,738 - MPMX20_03570 0.47 -0.1
3,764,783 - MPMX20_03570 0.55 -0.1
3,764,957 + MPMX20_03570 0.85 -2.2
3,764,960 - MPMX20_03570 0.86 -2.7
3,764,986 + +1.1
3,764,994 - +2.4
3,764,994 - -0.1
3,764,994 - -2.2
3,765,020 + -1.7
3,765,022 + +1.0
3,765,030 - -1.7
3,765,191 - -0.4
3,765,355 + MPMX20_03571 0.66 -1.7
3,765,473 - -2.7
3,765,473 - -0.2
3,765,473 - -2.1
3,765,475 + +0.3
3,765,515 + +0.3
3,765,528 - -2.7
3,765,628 - -1.1
3,765,647 - +2.4

Or see this region's nucleotide sequence