Experiment: 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02987 and MPMX20_02988 are separated by 18 nucleotides MPMX20_02988 and MPMX20_02989 are separated by 119 nucleotides MPMX20_02989 and MPMX20_02990 are separated by 80 nucleotides
MPMX20_02987: MPMX20_02987 - AMP nucleosidase, at 3,119,889 to 3,121,343
_02987
MPMX20_02988: MPMX20_02988 - hypothetical protein, at 3,121,362 to 3,123,134
_02988
MPMX20_02989: MPMX20_02989 - tRNA-Asn, at 3,123,254 to 3,123,329
_02989
MPMX20_02990: MPMX20_02990 - putative FMN/FAD exporter YeeO, at 3,123,410 to 3,124,852
_02990
Position (kb)
3121
3122
3123
3124 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3120.484 kb on + strand, within MPMX20_02987 at 3120.495 kb on - strand, within MPMX20_02987 at 3120.551 kb on - strand, within MPMX20_02987 at 3120.566 kb on + strand, within MPMX20_02987 at 3120.581 kb on + strand, within MPMX20_02987 at 3120.581 kb on + strand, within MPMX20_02987 at 3120.632 kb on + strand, within MPMX20_02987 at 3120.645 kb on - strand, within MPMX20_02987 at 3120.813 kb on - strand, within MPMX20_02987 at 3120.856 kb on - strand, within MPMX20_02987 at 3120.935 kb on - strand, within MPMX20_02987 at 3120.947 kb on - strand, within MPMX20_02987 at 3120.949 kb on - strand, within MPMX20_02987 at 3120.959 kb on + strand, within MPMX20_02987 at 3120.964 kb on + strand, within MPMX20_02987 at 3120.972 kb on - strand, within MPMX20_02987 at 3121.038 kb on + strand, within MPMX20_02987 at 3121.043 kb on + strand, within MPMX20_02987 at 3121.073 kb on - strand, within MPMX20_02987 at 3121.076 kb on + strand, within MPMX20_02987 at 3121.124 kb on + strand, within MPMX20_02987 at 3121.143 kb on + strand, within MPMX20_02987 at 3121.152 kb on + strand, within MPMX20_02987 at 3121.163 kb on - strand, within MPMX20_02987 at 3121.184 kb on - strand, within MPMX20_02987 at 3121.292 kb on - strand at 3121.326 kb on - strand at 3121.455 kb on + strand at 3121.455 kb on + strand at 3121.455 kb on + strand at 3121.463 kb on - strand at 3121.508 kb on - strand at 3121.518 kb on + strand at 3121.518 kb on + strand at 3121.592 kb on + strand, within MPMX20_02988 at 3121.592 kb on + strand, within MPMX20_02988 at 3121.649 kb on + strand, within MPMX20_02988 at 3121.661 kb on + strand, within MPMX20_02988 at 3121.661 kb on + strand, within MPMX20_02988 at 3121.661 kb on + strand, within MPMX20_02988 at 3121.669 kb on - strand, within MPMX20_02988 at 3121.669 kb on - strand, within MPMX20_02988 at 3121.693 kb on - strand, within MPMX20_02988 at 3121.693 kb on - strand, within MPMX20_02988 at 3121.727 kb on + strand, within MPMX20_02988 at 3121.729 kb on + strand, within MPMX20_02988 at 3121.737 kb on - strand, within MPMX20_02988 at 3121.910 kb on + strand, within MPMX20_02988 at 3121.910 kb on + strand, within MPMX20_02988 at 3121.918 kb on - strand, within MPMX20_02988 at 3121.990 kb on + strand, within MPMX20_02988 at 3121.990 kb on + strand, within MPMX20_02988 at 3121.998 kb on - strand, within MPMX20_02988 at 3121.998 kb on - strand, within MPMX20_02988 at 3122.057 kb on + strand, within MPMX20_02988 at 3122.109 kb on - strand, within MPMX20_02988 at 3122.180 kb on - strand, within MPMX20_02988 at 3122.228 kb on - strand, within MPMX20_02988 at 3122.329 kb on + strand, within MPMX20_02988 at 3122.462 kb on - strand, within MPMX20_02988 at 3122.577 kb on - strand, within MPMX20_02988 at 3122.591 kb on + strand, within MPMX20_02988 at 3122.666 kb on - strand, within MPMX20_02988 at 3122.760 kb on + strand, within MPMX20_02988 at 3122.760 kb on + strand, within MPMX20_02988 at 3122.767 kb on + strand, within MPMX20_02988 at 3122.768 kb on - strand, within MPMX20_02988 at 3122.775 kb on - strand, within MPMX20_02988 at 3122.849 kb on + strand, within MPMX20_02988 at 3122.895 kb on - strand, within MPMX20_02988 at 3122.912 kb on + strand, within MPMX20_02988 at 3122.922 kb on + strand, within MPMX20_02988 at 3122.981 kb on + strand at 3122.981 kb on + strand at 3122.985 kb on - strand at 3122.985 kb on - strand at 3122.985 kb on - strand at 3122.992 kb on + strand at 3123.000 kb on - strand at 3123.000 kb on - strand at 3123.129 kb on - strand at 3123.185 kb on - strand at 3123.420 kb on - strand at 3123.448 kb on + strand at 3123.508 kb on + strand at 3123.509 kb on - strand at 3123.516 kb on - strand at 3123.536 kb on - strand at 3123.553 kb on - strand at 3123.570 kb on - strand, within MPMX20_02990 at 3123.570 kb on - strand, within MPMX20_02990 at 3123.597 kb on - strand, within MPMX20_02990 at 3123.616 kb on - strand, within MPMX20_02990 at 3123.616 kb on - strand, within MPMX20_02990 at 3123.656 kb on + strand, within MPMX20_02990 at 3123.671 kb on + strand, within MPMX20_02990 at 3123.686 kb on - strand, within MPMX20_02990 at 3123.719 kb on - strand, within MPMX20_02990 at 3123.730 kb on - strand, within MPMX20_02990 at 3123.841 kb on + strand, within MPMX20_02990 at 3123.849 kb on - strand, within MPMX20_02990 at 3123.942 kb on - strand, within MPMX20_02990 at 3124.009 kb on + strand, within MPMX20_02990 at 3124.009 kb on + strand, within MPMX20_02990 at 3124.017 kb on - strand, within MPMX20_02990 at 3124.022 kb on - strand, within MPMX20_02990 at 3124.054 kb on - strand, within MPMX20_02990 at 3124.056 kb on + strand, within MPMX20_02990 at 3124.064 kb on - strand, within MPMX20_02990
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075 remove 3,120,484 + MPMX20_02987 0.41 -1.6 3,120,495 - MPMX20_02987 0.42 +0.2 3,120,551 - MPMX20_02987 0.45 -1.2 3,120,566 + MPMX20_02987 0.47 -1.2 3,120,581 + MPMX20_02987 0.48 +1.4 3,120,581 + MPMX20_02987 0.48 +0.4 3,120,632 + MPMX20_02987 0.51 -2.1 3,120,645 - MPMX20_02987 0.52 +0.7 3,120,813 - MPMX20_02987 0.64 +0.2 3,120,856 - MPMX20_02987 0.66 -0.6 3,120,935 - MPMX20_02987 0.72 +0.4 3,120,947 - MPMX20_02987 0.73 -1.3 3,120,949 - MPMX20_02987 0.73 -0.2 3,120,959 + MPMX20_02987 0.74 +2.2 3,120,964 + MPMX20_02987 0.74 +0.4 3,120,972 - MPMX20_02987 0.74 -0.8 3,121,038 + MPMX20_02987 0.79 -2.5 3,121,043 + MPMX20_02987 0.79 +0.2 3,121,073 - MPMX20_02987 0.81 -0.5 3,121,076 + MPMX20_02987 0.82 +0.3 3,121,124 + MPMX20_02987 0.85 +0.3 3,121,143 + MPMX20_02987 0.86 +1.1 3,121,152 + MPMX20_02987 0.87 -0.8 3,121,163 - MPMX20_02987 0.88 -2.8 3,121,184 - MPMX20_02987 0.89 -0.0 3,121,292 - -1.5 3,121,326 - -0.2 3,121,455 + -1.4 3,121,455 + -2.6 3,121,455 + -3.2 3,121,463 - -2.7 3,121,508 - -1.0 3,121,518 + -0.2 3,121,518 + +0.5 3,121,592 + MPMX20_02988 0.13 -1.1 3,121,592 + MPMX20_02988 0.13 +1.3 3,121,649 + MPMX20_02988 0.16 -2.2 3,121,661 + MPMX20_02988 0.17 -2.3 3,121,661 + MPMX20_02988 0.17 -2.0 3,121,661 + MPMX20_02988 0.17 -1.4 3,121,669 - MPMX20_02988 0.17 +0.3 3,121,669 - MPMX20_02988 0.17 +0.6 3,121,693 - MPMX20_02988 0.19 +0.1 3,121,693 - MPMX20_02988 0.19 +2.5 3,121,727 + MPMX20_02988 0.21 +2.2 3,121,729 + MPMX20_02988 0.21 -0.1 3,121,737 - MPMX20_02988 0.21 -1.2 3,121,910 + MPMX20_02988 0.31 -0.1 3,121,910 + MPMX20_02988 0.31 -0.9 3,121,918 - MPMX20_02988 0.31 +0.7 3,121,990 + MPMX20_02988 0.35 +1.8 3,121,990 + MPMX20_02988 0.35 +1.4 3,121,998 - MPMX20_02988 0.36 +0.4 3,121,998 - MPMX20_02988 0.36 +1.2 3,122,057 + MPMX20_02988 0.39 -0.9 3,122,109 - MPMX20_02988 0.42 +1.0 3,122,180 - MPMX20_02988 0.46 -1.7 3,122,228 - MPMX20_02988 0.49 +0.4 3,122,329 + MPMX20_02988 0.55 -0.3 3,122,462 - MPMX20_02988 0.62 -1.9 3,122,577 - MPMX20_02988 0.69 +0.3 3,122,591 + MPMX20_02988 0.69 -2.5 3,122,666 - MPMX20_02988 0.74 +2.8 3,122,760 + MPMX20_02988 0.79 +0.8 3,122,760 + MPMX20_02988 0.79 +1.5 3,122,767 + MPMX20_02988 0.79 -1.4 3,122,768 - MPMX20_02988 0.79 +0.6 3,122,775 - MPMX20_02988 0.80 +1.2 3,122,849 + MPMX20_02988 0.84 -0.6 3,122,895 - MPMX20_02988 0.86 -2.2 3,122,912 + MPMX20_02988 0.87 -1.6 3,122,922 + MPMX20_02988 0.88 +0.6 3,122,981 + +0.2 3,122,981 + -1.8 3,122,985 - +0.8 3,122,985 - -0.0 3,122,985 - +1.4 3,122,992 + -2.2 3,123,000 - +0.0 3,123,000 - -0.3 3,123,129 - -0.6 3,123,185 - -0.5 3,123,420 - +1.5 3,123,448 + -1.6 3,123,508 + +0.0 3,123,509 - -2.5 3,123,516 - -1.7 3,123,536 - -2.3 3,123,553 - +1.8 3,123,570 - MPMX20_02990 0.11 +0.1 3,123,570 - MPMX20_02990 0.11 -0.0 3,123,597 - MPMX20_02990 0.13 +2.9 3,123,616 - MPMX20_02990 0.14 -1.8 3,123,616 - MPMX20_02990 0.14 -1.1 3,123,656 + MPMX20_02990 0.17 -1.8 3,123,671 + MPMX20_02990 0.18 -0.2 3,123,686 - MPMX20_02990 0.19 -2.9 3,123,719 - MPMX20_02990 0.21 +1.1 3,123,730 - MPMX20_02990 0.22 -0.5 3,123,841 + MPMX20_02990 0.30 -0.9 3,123,849 - MPMX20_02990 0.30 -2.7 3,123,942 - MPMX20_02990 0.37 +1.0 3,124,009 + MPMX20_02990 0.42 +0.0 3,124,009 + MPMX20_02990 0.42 +0.8 3,124,017 - MPMX20_02990 0.42 +0.9 3,124,022 - MPMX20_02990 0.42 +0.0 3,124,054 - MPMX20_02990 0.45 +0.1 3,124,056 + MPMX20_02990 0.45 -2.6 3,124,064 - MPMX20_02990 0.45 -0.6
Or see this region's nucleotide sequence