Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02988

Experiment: 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02987 and MPMX20_02988 are separated by 18 nucleotidesMPMX20_02988 and MPMX20_02989 are separated by 119 nucleotidesMPMX20_02989 and MPMX20_02990 are separated by 80 nucleotides MPMX20_02987: MPMX20_02987 - AMP nucleosidase, at 3,119,889 to 3,121,343 _02987 MPMX20_02988: MPMX20_02988 - hypothetical protein, at 3,121,362 to 3,123,134 _02988 MPMX20_02989: MPMX20_02989 - tRNA-Asn, at 3,123,254 to 3,123,329 _02989 MPMX20_02990: MPMX20_02990 - putative FMN/FAD exporter YeeO, at 3,123,410 to 3,124,852 _02990 Position (kb) 3121 3122 3123 3124Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3120.484 kb on + strand, within MPMX20_02987at 3120.495 kb on - strand, within MPMX20_02987at 3120.551 kb on - strand, within MPMX20_02987at 3120.566 kb on + strand, within MPMX20_02987at 3120.581 kb on + strand, within MPMX20_02987at 3120.581 kb on + strand, within MPMX20_02987at 3120.632 kb on + strand, within MPMX20_02987at 3120.645 kb on - strand, within MPMX20_02987at 3120.813 kb on - strand, within MPMX20_02987at 3120.856 kb on - strand, within MPMX20_02987at 3120.935 kb on - strand, within MPMX20_02987at 3120.947 kb on - strand, within MPMX20_02987at 3120.949 kb on - strand, within MPMX20_02987at 3120.959 kb on + strand, within MPMX20_02987at 3120.964 kb on + strand, within MPMX20_02987at 3120.972 kb on - strand, within MPMX20_02987at 3121.038 kb on + strand, within MPMX20_02987at 3121.043 kb on + strand, within MPMX20_02987at 3121.073 kb on - strand, within MPMX20_02987at 3121.076 kb on + strand, within MPMX20_02987at 3121.124 kb on + strand, within MPMX20_02987at 3121.143 kb on + strand, within MPMX20_02987at 3121.152 kb on + strand, within MPMX20_02987at 3121.163 kb on - strand, within MPMX20_02987at 3121.184 kb on - strand, within MPMX20_02987at 3121.292 kb on - strandat 3121.326 kb on - strandat 3121.455 kb on + strandat 3121.455 kb on + strandat 3121.455 kb on + strandat 3121.463 kb on - strandat 3121.508 kb on - strandat 3121.518 kb on + strandat 3121.518 kb on + strandat 3121.592 kb on + strand, within MPMX20_02988at 3121.592 kb on + strand, within MPMX20_02988at 3121.649 kb on + strand, within MPMX20_02988at 3121.661 kb on + strand, within MPMX20_02988at 3121.661 kb on + strand, within MPMX20_02988at 3121.661 kb on + strand, within MPMX20_02988at 3121.669 kb on - strand, within MPMX20_02988at 3121.669 kb on - strand, within MPMX20_02988at 3121.693 kb on - strand, within MPMX20_02988at 3121.693 kb on - strand, within MPMX20_02988at 3121.727 kb on + strand, within MPMX20_02988at 3121.729 kb on + strand, within MPMX20_02988at 3121.737 kb on - strand, within MPMX20_02988at 3121.910 kb on + strand, within MPMX20_02988at 3121.910 kb on + strand, within MPMX20_02988at 3121.918 kb on - strand, within MPMX20_02988at 3121.990 kb on + strand, within MPMX20_02988at 3121.990 kb on + strand, within MPMX20_02988at 3121.998 kb on - strand, within MPMX20_02988at 3121.998 kb on - strand, within MPMX20_02988at 3122.057 kb on + strand, within MPMX20_02988at 3122.109 kb on - strand, within MPMX20_02988at 3122.180 kb on - strand, within MPMX20_02988at 3122.228 kb on - strand, within MPMX20_02988at 3122.329 kb on + strand, within MPMX20_02988at 3122.462 kb on - strand, within MPMX20_02988at 3122.577 kb on - strand, within MPMX20_02988at 3122.591 kb on + strand, within MPMX20_02988at 3122.666 kb on - strand, within MPMX20_02988at 3122.760 kb on + strand, within MPMX20_02988at 3122.760 kb on + strand, within MPMX20_02988at 3122.767 kb on + strand, within MPMX20_02988at 3122.768 kb on - strand, within MPMX20_02988at 3122.775 kb on - strand, within MPMX20_02988at 3122.849 kb on + strand, within MPMX20_02988at 3122.895 kb on - strand, within MPMX20_02988at 3122.912 kb on + strand, within MPMX20_02988at 3122.922 kb on + strand, within MPMX20_02988at 3122.981 kb on + strandat 3122.981 kb on + strandat 3122.985 kb on - strandat 3122.985 kb on - strandat 3122.985 kb on - strandat 3122.992 kb on + strandat 3123.000 kb on - strandat 3123.000 kb on - strandat 3123.129 kb on - strandat 3123.185 kb on - strandat 3123.420 kb on - strandat 3123.448 kb on + strandat 3123.508 kb on + strandat 3123.509 kb on - strandat 3123.516 kb on - strandat 3123.536 kb on - strandat 3123.553 kb on - strandat 3123.570 kb on - strand, within MPMX20_02990at 3123.570 kb on - strand, within MPMX20_02990at 3123.597 kb on - strand, within MPMX20_02990at 3123.616 kb on - strand, within MPMX20_02990at 3123.616 kb on - strand, within MPMX20_02990at 3123.656 kb on + strand, within MPMX20_02990at 3123.671 kb on + strand, within MPMX20_02990at 3123.686 kb on - strand, within MPMX20_02990at 3123.719 kb on - strand, within MPMX20_02990at 3123.730 kb on - strand, within MPMX20_02990at 3123.841 kb on + strand, within MPMX20_02990at 3123.849 kb on - strand, within MPMX20_02990at 3123.942 kb on - strand, within MPMX20_02990at 3124.009 kb on + strand, within MPMX20_02990at 3124.009 kb on + strand, within MPMX20_02990at 3124.017 kb on - strand, within MPMX20_02990at 3124.022 kb on - strand, within MPMX20_02990at 3124.054 kb on - strand, within MPMX20_02990at 3124.056 kb on + strand, within MPMX20_02990at 3124.064 kb on - strand, within MPMX20_02990

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075
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3,120,484 + MPMX20_02987 0.41 -1.6
3,120,495 - MPMX20_02987 0.42 +0.2
3,120,551 - MPMX20_02987 0.45 -1.2
3,120,566 + MPMX20_02987 0.47 -1.2
3,120,581 + MPMX20_02987 0.48 +1.4
3,120,581 + MPMX20_02987 0.48 +0.4
3,120,632 + MPMX20_02987 0.51 -2.1
3,120,645 - MPMX20_02987 0.52 +0.7
3,120,813 - MPMX20_02987 0.64 +0.2
3,120,856 - MPMX20_02987 0.66 -0.6
3,120,935 - MPMX20_02987 0.72 +0.4
3,120,947 - MPMX20_02987 0.73 -1.3
3,120,949 - MPMX20_02987 0.73 -0.2
3,120,959 + MPMX20_02987 0.74 +2.2
3,120,964 + MPMX20_02987 0.74 +0.4
3,120,972 - MPMX20_02987 0.74 -0.8
3,121,038 + MPMX20_02987 0.79 -2.5
3,121,043 + MPMX20_02987 0.79 +0.2
3,121,073 - MPMX20_02987 0.81 -0.5
3,121,076 + MPMX20_02987 0.82 +0.3
3,121,124 + MPMX20_02987 0.85 +0.3
3,121,143 + MPMX20_02987 0.86 +1.1
3,121,152 + MPMX20_02987 0.87 -0.8
3,121,163 - MPMX20_02987 0.88 -2.8
3,121,184 - MPMX20_02987 0.89 -0.0
3,121,292 - -1.5
3,121,326 - -0.2
3,121,455 + -1.4
3,121,455 + -2.6
3,121,455 + -3.2
3,121,463 - -2.7
3,121,508 - -1.0
3,121,518 + -0.2
3,121,518 + +0.5
3,121,592 + MPMX20_02988 0.13 -1.1
3,121,592 + MPMX20_02988 0.13 +1.3
3,121,649 + MPMX20_02988 0.16 -2.2
3,121,661 + MPMX20_02988 0.17 -2.3
3,121,661 + MPMX20_02988 0.17 -2.0
3,121,661 + MPMX20_02988 0.17 -1.4
3,121,669 - MPMX20_02988 0.17 +0.3
3,121,669 - MPMX20_02988 0.17 +0.6
3,121,693 - MPMX20_02988 0.19 +0.1
3,121,693 - MPMX20_02988 0.19 +2.5
3,121,727 + MPMX20_02988 0.21 +2.2
3,121,729 + MPMX20_02988 0.21 -0.1
3,121,737 - MPMX20_02988 0.21 -1.2
3,121,910 + MPMX20_02988 0.31 -0.1
3,121,910 + MPMX20_02988 0.31 -0.9
3,121,918 - MPMX20_02988 0.31 +0.7
3,121,990 + MPMX20_02988 0.35 +1.8
3,121,990 + MPMX20_02988 0.35 +1.4
3,121,998 - MPMX20_02988 0.36 +0.4
3,121,998 - MPMX20_02988 0.36 +1.2
3,122,057 + MPMX20_02988 0.39 -0.9
3,122,109 - MPMX20_02988 0.42 +1.0
3,122,180 - MPMX20_02988 0.46 -1.7
3,122,228 - MPMX20_02988 0.49 +0.4
3,122,329 + MPMX20_02988 0.55 -0.3
3,122,462 - MPMX20_02988 0.62 -1.9
3,122,577 - MPMX20_02988 0.69 +0.3
3,122,591 + MPMX20_02988 0.69 -2.5
3,122,666 - MPMX20_02988 0.74 +2.8
3,122,760 + MPMX20_02988 0.79 +0.8
3,122,760 + MPMX20_02988 0.79 +1.5
3,122,767 + MPMX20_02988 0.79 -1.4
3,122,768 - MPMX20_02988 0.79 +0.6
3,122,775 - MPMX20_02988 0.80 +1.2
3,122,849 + MPMX20_02988 0.84 -0.6
3,122,895 - MPMX20_02988 0.86 -2.2
3,122,912 + MPMX20_02988 0.87 -1.6
3,122,922 + MPMX20_02988 0.88 +0.6
3,122,981 + +0.2
3,122,981 + -1.8
3,122,985 - +0.8
3,122,985 - -0.0
3,122,985 - +1.4
3,122,992 + -2.2
3,123,000 - +0.0
3,123,000 - -0.3
3,123,129 - -0.6
3,123,185 - -0.5
3,123,420 - +1.5
3,123,448 + -1.6
3,123,508 + +0.0
3,123,509 - -2.5
3,123,516 - -1.7
3,123,536 - -2.3
3,123,553 - +1.8
3,123,570 - MPMX20_02990 0.11 +0.1
3,123,570 - MPMX20_02990 0.11 -0.0
3,123,597 - MPMX20_02990 0.13 +2.9
3,123,616 - MPMX20_02990 0.14 -1.8
3,123,616 - MPMX20_02990 0.14 -1.1
3,123,656 + MPMX20_02990 0.17 -1.8
3,123,671 + MPMX20_02990 0.18 -0.2
3,123,686 - MPMX20_02990 0.19 -2.9
3,123,719 - MPMX20_02990 0.21 +1.1
3,123,730 - MPMX20_02990 0.22 -0.5
3,123,841 + MPMX20_02990 0.30 -0.9
3,123,849 - MPMX20_02990 0.30 -2.7
3,123,942 - MPMX20_02990 0.37 +1.0
3,124,009 + MPMX20_02990 0.42 +0.0
3,124,009 + MPMX20_02990 0.42 +0.8
3,124,017 - MPMX20_02990 0.42 +0.9
3,124,022 - MPMX20_02990 0.42 +0.0
3,124,054 - MPMX20_02990 0.45 +0.1
3,124,056 + MPMX20_02990 0.45 -2.6
3,124,064 - MPMX20_02990 0.45 -0.6

Or see this region's nucleotide sequence