Experiment: 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02129 and MPMX20_02130 are separated by 51 nucleotides MPMX20_02130 and MPMX20_02131 are separated by 219 nucleotides
MPMX20_02129: MPMX20_02129 - Soluble epoxide hydrolase, at 2,217,731 to 2,218,636
_02129
MPMX20_02130: MPMX20_02130 - HTH-type transcriptional repressor ComR, at 2,218,688 to 2,219,296
_02130
MPMX20_02131: MPMX20_02131 - putative MFS-type transporter, at 2,219,516 to 2,220,712
_02131
Position (kb)
2218
2219
2220 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 2217.696 kb on - strand at 2217.696 kb on - strand at 2217.698 kb on - strand at 2217.699 kb on - strand at 2217.699 kb on - strand at 2217.707 kb on - strand at 2217.709 kb on + strand at 2217.709 kb on + strand at 2217.709 kb on + strand at 2217.709 kb on + strand at 2217.709 kb on + strand at 2217.709 kb on + strand at 2217.709 kb on + strand at 2217.711 kb on + strand at 2217.715 kb on - strand at 2217.715 kb on - strand at 2217.715 kb on - strand at 2217.715 kb on - strand at 2217.715 kb on - strand at 2217.715 kb on - strand at 2217.715 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.717 kb on - strand at 2217.722 kb on - strand at 2217.722 kb on - strand at 2217.722 kb on - strand at 2217.732 kb on - strand at 2217.753 kb on + strand at 2217.753 kb on + strand at 2217.761 kb on - strand at 2217.761 kb on - strand at 2217.761 kb on - strand at 2217.761 kb on - strand at 2217.763 kb on + strand at 2217.764 kb on + strand at 2217.765 kb on + strand at 2217.767 kb on - strand at 2217.773 kb on - strand at 2217.773 kb on - strand at 2217.773 kb on - strand at 2217.773 kb on - strand at 2217.808 kb on + strand at 2217.816 kb on - strand at 2217.816 kb on - strand at 2217.816 kb on - strand at 2217.816 kb on - strand at 2217.816 kb on - strand at 2217.816 kb on - strand at 2217.816 kb on - strand at 2217.816 kb on - strand at 2217.816 kb on - strand at 2217.824 kb on - strand, within MPMX20_02129 at 2217.829 kb on - strand, within MPMX20_02129 at 2217.932 kb on + strand, within MPMX20_02129 at 2217.932 kb on + strand, within MPMX20_02129 at 2217.932 kb on + strand, within MPMX20_02129 at 2217.940 kb on - strand, within MPMX20_02129 at 2217.940 kb on - strand, within MPMX20_02129 at 2217.940 kb on - strand, within MPMX20_02129 at 2217.940 kb on - strand, within MPMX20_02129 at 2217.945 kb on - strand, within MPMX20_02129 at 2217.983 kb on - strand, within MPMX20_02129 at 2218.088 kb on - strand, within MPMX20_02129 at 2218.118 kb on - strand, within MPMX20_02129 at 2218.153 kb on - strand, within MPMX20_02129 at 2218.223 kb on - strand, within MPMX20_02129 at 2218.266 kb on - strand, within MPMX20_02129 at 2218.268 kb on - strand, within MPMX20_02129 at 2218.283 kb on + strand, within MPMX20_02129 at 2218.292 kb on - strand, within MPMX20_02129 at 2218.326 kb on + strand, within MPMX20_02129 at 2218.350 kb on - strand, within MPMX20_02129 at 2218.357 kb on + strand, within MPMX20_02129 at 2218.397 kb on + strand, within MPMX20_02129 at 2218.397 kb on + strand, within MPMX20_02129 at 2218.405 kb on - strand, within MPMX20_02129 at 2218.405 kb on - strand, within MPMX20_02129 at 2218.456 kb on + strand, within MPMX20_02129 at 2218.463 kb on - strand, within MPMX20_02129 at 2218.463 kb on - strand, within MPMX20_02129 at 2218.488 kb on + strand, within MPMX20_02129 at 2218.520 kb on - strand, within MPMX20_02129 at 2218.520 kb on - strand, within MPMX20_02129 at 2218.526 kb on + strand, within MPMX20_02129 at 2218.530 kb on - strand, within MPMX20_02129 at 2218.563 kb on + strand at 2218.571 kb on - strand at 2218.597 kb on - strand at 2218.599 kb on + strand at 2218.634 kb on + strand at 2218.718 kb on - strand at 2218.746 kb on + strand at 2218.766 kb on + strand, within MPMX20_02130 at 2218.774 kb on - strand, within MPMX20_02130 at 2218.774 kb on - strand, within MPMX20_02130 at 2218.775 kb on - strand, within MPMX20_02130 at 2218.789 kb on - strand, within MPMX20_02130 at 2218.791 kb on - strand, within MPMX20_02130 at 2218.837 kb on + strand, within MPMX20_02130 at 2218.863 kb on - strand, within MPMX20_02130 at 2218.884 kb on + strand, within MPMX20_02130 at 2218.894 kb on + strand, within MPMX20_02130 at 2218.930 kb on + strand, within MPMX20_02130 at 2218.930 kb on + strand, within MPMX20_02130 at 2218.930 kb on + strand, within MPMX20_02130 at 2218.930 kb on + strand, within MPMX20_02130 at 2218.936 kb on - strand, within MPMX20_02130 at 2218.938 kb on - strand, within MPMX20_02130 at 2218.938 kb on - strand, within MPMX20_02130 at 2218.938 kb on - strand, within MPMX20_02130 at 2218.938 kb on - strand, within MPMX20_02130 at 2218.948 kb on + strand, within MPMX20_02130 at 2219.016 kb on + strand, within MPMX20_02130 at 2219.027 kb on + strand, within MPMX20_02130 at 2219.027 kb on + strand, within MPMX20_02130 at 2219.027 kb on + strand, within MPMX20_02130 at 2219.035 kb on - strand, within MPMX20_02130 at 2219.042 kb on + strand, within MPMX20_02130 at 2219.078 kb on + strand, within MPMX20_02130 at 2219.078 kb on + strand, within MPMX20_02130 at 2219.085 kb on + strand, within MPMX20_02130 at 2219.086 kb on - strand, within MPMX20_02130 at 2219.128 kb on - strand, within MPMX20_02130 at 2219.145 kb on + strand, within MPMX20_02130 at 2219.155 kb on + strand, within MPMX20_02130 at 2219.158 kb on - strand, within MPMX20_02130 at 2219.158 kb on - strand, within MPMX20_02130 at 2219.165 kb on + strand, within MPMX20_02130 at 2219.178 kb on - strand, within MPMX20_02130 at 2219.189 kb on + strand, within MPMX20_02130 at 2219.191 kb on + strand, within MPMX20_02130 at 2219.197 kb on - strand, within MPMX20_02130 at 2219.228 kb on - strand, within MPMX20_02130 at 2219.233 kb on - strand, within MPMX20_02130 at 2219.242 kb on + strand at 2219.350 kb on + strand at 2219.427 kb on + strand at 2219.429 kb on + strand at 2219.437 kb on - strand at 2219.437 kb on - strand at 2219.439 kb on - strand at 2219.506 kb on + strand at 2219.506 kb on + strand at 2219.512 kb on + strand at 2219.514 kb on - strand at 2219.514 kb on - strand at 2219.546 kb on - strand at 2219.570 kb on - strand at 2219.716 kb on + strand, within MPMX20_02131 at 2219.738 kb on - strand, within MPMX20_02131 at 2219.740 kb on + strand, within MPMX20_02131 at 2219.740 kb on + strand, within MPMX20_02131 at 2219.748 kb on - strand, within MPMX20_02131 at 2219.748 kb on - strand, within MPMX20_02131 at 2219.748 kb on - strand, within MPMX20_02131 at 2219.751 kb on + strand, within MPMX20_02131 at 2219.751 kb on + strand, within MPMX20_02131 at 2219.751 kb on + strand, within MPMX20_02131 at 2219.761 kb on + strand, within MPMX20_02131 at 2219.781 kb on - strand, within MPMX20_02131 at 2219.872 kb on - strand, within MPMX20_02131 at 2219.985 kb on - strand, within MPMX20_02131 at 2220.020 kb on - strand, within MPMX20_02131 at 2220.099 kb on - strand, within MPMX20_02131 at 2220.151 kb on + strand, within MPMX20_02131 at 2220.151 kb on + strand, within MPMX20_02131 at 2220.151 kb on + strand, within MPMX20_02131 at 2220.159 kb on - strand, within MPMX20_02131 at 2220.159 kb on - strand, within MPMX20_02131 at 2220.170 kb on - strand, within MPMX20_02131 at 2220.195 kb on - strand, within MPMX20_02131
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075 remove 2,217,696 - +1.2 2,217,696 - +0.6 2,217,698 - -2.3 2,217,699 - +0.6 2,217,699 - +0.8 2,217,707 - -2.4 2,217,709 + -0.3 2,217,709 + +0.1 2,217,709 + +2.7 2,217,709 + -1.1 2,217,709 + -0.5 2,217,709 + +2.7 2,217,709 + +0.1 2,217,711 + -0.5 2,217,715 - +0.9 2,217,715 - +1.0 2,217,715 - -1.0 2,217,715 - -2.9 2,217,715 - -0.1 2,217,715 - -0.3 2,217,715 - +3.3 2,217,717 - -0.1 2,217,717 - -0.6 2,217,717 - +0.5 2,217,717 - -1.7 2,217,717 - +7.0 2,217,717 - +1.2 2,217,717 - -1.8 2,217,717 - -1.0 2,217,717 - -1.7 2,217,717 - -2.4 2,217,717 - -0.8 2,217,717 - +1.6 2,217,717 - +1.7 2,217,717 - +2.6 2,217,717 - +1.3 2,217,717 - +0.1 2,217,717 - -3.1 2,217,717 - -0.1 2,217,717 - -0.5 2,217,717 - -1.2 2,217,717 - -0.3 2,217,717 - -2.4 2,217,717 - +0.8 2,217,717 - +0.4 2,217,717 - -1.6 2,217,717 - -2.8 2,217,717 - -1.1 2,217,717 - +1.4 2,217,717 - -0.1 2,217,717 - +3.3 2,217,717 - +1.3 2,217,717 - -0.5 2,217,717 - +0.6 2,217,717 - -2.0 2,217,717 - -0.6 2,217,717 - -0.1 2,217,717 - -1.4 2,217,717 - +1.7 2,217,717 - -1.2 2,217,717 - -2.1 2,217,717 - +1.7 2,217,717 - +1.3 2,217,717 - -1.2 2,217,717 - -3.6 2,217,717 - -1.2 2,217,717 - -1.3 2,217,717 - -1.1 2,217,717 - -1.2 2,217,717 - -1.3 2,217,717 - +1.1 2,217,717 - +0.7 2,217,717 - +5.4 2,217,717 - -1.6 2,217,717 - +1.7 2,217,717 - -1.9 2,217,717 - -3.0 2,217,717 - -3.4 2,217,717 - +0.5 2,217,717 - -2.2 2,217,717 - -0.1 2,217,717 - -0.0 2,217,717 - +0.6 2,217,722 - +0.5 2,217,722 - -0.8 2,217,722 - -0.3 2,217,732 - -1.8 2,217,753 + -3.0 2,217,753 + -0.3 2,217,761 - -1.1 2,217,761 - +0.5 2,217,761 - -2.7 2,217,761 - +0.5 2,217,763 + +0.0 2,217,764 + +1.1 2,217,765 + -0.3 2,217,767 - +1.6 2,217,773 - -2.7 2,217,773 - -0.7 2,217,773 - +0.1 2,217,773 - +0.5 2,217,808 + -1.3 2,217,816 - +0.6 2,217,816 - -0.4 2,217,816 - -1.4 2,217,816 - +1.9 2,217,816 - +0.1 2,217,816 - +1.1 2,217,816 - +0.5 2,217,816 - -0.3 2,217,816 - +1.0 2,217,824 - MPMX20_02129 0.10 -0.9 2,217,829 - MPMX20_02129 0.11 +2.2 2,217,932 + MPMX20_02129 0.22 +0.5 2,217,932 + MPMX20_02129 0.22 -1.4 2,217,932 + MPMX20_02129 0.22 -2.2 2,217,940 - MPMX20_02129 0.23 -1.4 2,217,940 - MPMX20_02129 0.23 +0.4 2,217,940 - MPMX20_02129 0.23 -1.6 2,217,940 - MPMX20_02129 0.23 -0.6 2,217,945 - MPMX20_02129 0.24 +0.5 2,217,983 - MPMX20_02129 0.28 +1.1 2,218,088 - MPMX20_02129 0.39 -1.6 2,218,118 - MPMX20_02129 0.43 +0.2 2,218,153 - MPMX20_02129 0.47 +0.5 2,218,223 - MPMX20_02129 0.54 -2.6 2,218,266 - MPMX20_02129 0.59 +1.3 2,218,268 - MPMX20_02129 0.59 +0.0 2,218,283 + MPMX20_02129 0.61 +0.6 2,218,292 - MPMX20_02129 0.62 +0.6 2,218,326 + MPMX20_02129 0.66 -2.3 2,218,350 - MPMX20_02129 0.68 +1.2 2,218,357 + MPMX20_02129 0.69 -1.1 2,218,397 + MPMX20_02129 0.74 -0.5 2,218,397 + MPMX20_02129 0.74 -1.8 2,218,405 - MPMX20_02129 0.74 -2.0 2,218,405 - MPMX20_02129 0.74 +1.7 2,218,456 + MPMX20_02129 0.80 -1.4 2,218,463 - MPMX20_02129 0.81 +1.0 2,218,463 - MPMX20_02129 0.81 +0.8 2,218,488 + MPMX20_02129 0.84 +0.1 2,218,520 - MPMX20_02129 0.87 -2.5 2,218,520 - MPMX20_02129 0.87 -0.8 2,218,526 + MPMX20_02129 0.88 +0.4 2,218,530 - MPMX20_02129 0.88 -1.1 2,218,563 + -1.7 2,218,571 - -0.7 2,218,597 - -0.5 2,218,599 + -1.9 2,218,634 + +2.5 2,218,718 - -1.4 2,218,746 + -1.6 2,218,766 + MPMX20_02130 0.13 -3.4 2,218,774 - MPMX20_02130 0.14 -2.2 2,218,774 - MPMX20_02130 0.14 +1.2 2,218,775 - MPMX20_02130 0.14 +1.7 2,218,789 - MPMX20_02130 0.17 -1.4 2,218,791 - MPMX20_02130 0.17 -0.1 2,218,837 + MPMX20_02130 0.24 +0.1 2,218,863 - MPMX20_02130 0.29 -0.3 2,218,884 + MPMX20_02130 0.32 +0.3 2,218,894 + MPMX20_02130 0.34 +2.9 2,218,930 + MPMX20_02130 0.40 +0.0 2,218,930 + MPMX20_02130 0.40 -1.0 2,218,930 + MPMX20_02130 0.40 -0.7 2,218,930 + MPMX20_02130 0.40 -1.5 2,218,936 - MPMX20_02130 0.41 -0.1 2,218,938 - MPMX20_02130 0.41 -1.6 2,218,938 - MPMX20_02130 0.41 +0.7 2,218,938 - MPMX20_02130 0.41 -1.8 2,218,938 - MPMX20_02130 0.41 -1.1 2,218,948 + MPMX20_02130 0.43 -3.1 2,219,016 + MPMX20_02130 0.54 +1.4 2,219,027 + MPMX20_02130 0.56 -2.6 2,219,027 + MPMX20_02130 0.56 +0.2 2,219,027 + MPMX20_02130 0.56 -0.3 2,219,035 - MPMX20_02130 0.57 -1.8 2,219,042 + MPMX20_02130 0.58 +0.6 2,219,078 + MPMX20_02130 0.64 -1.2 2,219,078 + MPMX20_02130 0.64 -1.0 2,219,085 + MPMX20_02130 0.65 -1.4 2,219,086 - MPMX20_02130 0.65 -2.8 2,219,128 - MPMX20_02130 0.72 +0.7 2,219,145 + MPMX20_02130 0.75 +1.6 2,219,155 + MPMX20_02130 0.77 +0.4 2,219,158 - MPMX20_02130 0.77 +1.7 2,219,158 - MPMX20_02130 0.77 -1.7 2,219,165 + MPMX20_02130 0.78 -1.4 2,219,178 - MPMX20_02130 0.80 +1.1 2,219,189 + MPMX20_02130 0.82 +1.0 2,219,191 + MPMX20_02130 0.83 -1.0 2,219,197 - MPMX20_02130 0.84 +0.6 2,219,228 - MPMX20_02130 0.89 -0.6 2,219,233 - MPMX20_02130 0.89 -3.0 2,219,242 + -0.3 2,219,350 + +0.4 2,219,427 + -1.1 2,219,429 + -1.6 2,219,437 - +3.2 2,219,437 - +0.1 2,219,439 - +1.7 2,219,506 + -2.3 2,219,506 + -0.6 2,219,512 + -2.5 2,219,514 - -1.2 2,219,514 - -0.9 2,219,546 - -0.1 2,219,570 - +1.5 2,219,716 + MPMX20_02131 0.17 -1.6 2,219,738 - MPMX20_02131 0.19 +0.5 2,219,740 + MPMX20_02131 0.19 -1.3 2,219,740 + MPMX20_02131 0.19 +1.5 2,219,748 - MPMX20_02131 0.19 -1.2 2,219,748 - MPMX20_02131 0.19 +0.3 2,219,748 - MPMX20_02131 0.19 +1.3 2,219,751 + MPMX20_02131 0.20 -1.8 2,219,751 + MPMX20_02131 0.20 -2.7 2,219,751 + MPMX20_02131 0.20 -0.5 2,219,761 + MPMX20_02131 0.20 -0.3 2,219,781 - MPMX20_02131 0.22 -1.1 2,219,872 - MPMX20_02131 0.30 +2.2 2,219,985 - MPMX20_02131 0.39 -1.8 2,220,020 - MPMX20_02131 0.42 -0.1 2,220,099 - MPMX20_02131 0.49 -1.3 2,220,151 + MPMX20_02131 0.53 -0.4 2,220,151 + MPMX20_02131 0.53 -1.8 2,220,151 + MPMX20_02131 0.53 +0.3 2,220,159 - MPMX20_02131 0.54 -2.2 2,220,159 - MPMX20_02131 0.54 +1.1 2,220,170 - MPMX20_02131 0.55 +2.7 2,220,195 - MPMX20_02131 0.57 +1.8
Or see this region's nucleotide sequence