Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01483

Experiment: 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01481 and MPMX20_01482 are separated by 40 nucleotidesMPMX20_01482 and MPMX20_01483 overlap by 11 nucleotidesMPMX20_01483 and MPMX20_01484 are separated by 82 nucleotidesMPMX20_01484 and MPMX20_01485 overlap by 4 nucleotides MPMX20_01481: MPMX20_01481 - Multidrug transporter MdfA, at 1,551,675 to 1,552,907 _01481 MPMX20_01482: MPMX20_01482 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YbjI, at 1,552,948 to 1,553,760 _01482 MPMX20_01483: MPMX20_01483 - Inner membrane protein YbjJ, at 1,553,750 to 1,554,964 _01483 MPMX20_01484: MPMX20_01484 - HTH-type transcriptional regulator RcdA, at 1,555,047 to 1,555,598 _01484 MPMX20_01485: MPMX20_01485 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 1,555,595 to 1,556,371 _01485 Position (kb) 1553 1554 1555Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1552.837 kb on - strandat 1552.837 kb on - strandat 1552.846 kb on + strandat 1552.852 kb on + strandat 1552.909 kb on - strandat 1552.934 kb on + strandat 1552.935 kb on + strandat 1552.935 kb on + strandat 1552.993 kb on + strandat 1553.008 kb on - strandat 1553.067 kb on + strand, within MPMX20_01482at 1553.074 kb on + strand, within MPMX20_01482at 1553.074 kb on + strand, within MPMX20_01482at 1553.082 kb on - strand, within MPMX20_01482at 1553.082 kb on - strand, within MPMX20_01482at 1553.148 kb on - strand, within MPMX20_01482at 1553.177 kb on + strand, within MPMX20_01482at 1553.177 kb on + strand, within MPMX20_01482at 1553.213 kb on + strand, within MPMX20_01482at 1553.241 kb on + strand, within MPMX20_01482at 1553.241 kb on + strand, within MPMX20_01482at 1553.241 kb on + strand, within MPMX20_01482at 1553.241 kb on + strand, within MPMX20_01482at 1553.249 kb on - strand, within MPMX20_01482at 1553.249 kb on - strand, within MPMX20_01482at 1553.263 kb on + strand, within MPMX20_01482at 1553.286 kb on + strand, within MPMX20_01482at 1553.297 kb on + strand, within MPMX20_01482at 1553.377 kb on - strand, within MPMX20_01482at 1553.377 kb on - strand, within MPMX20_01482at 1553.399 kb on - strand, within MPMX20_01482at 1553.399 kb on - strand, within MPMX20_01482at 1553.399 kb on - strand, within MPMX20_01482at 1553.426 kb on - strand, within MPMX20_01482at 1553.470 kb on + strand, within MPMX20_01482at 1553.476 kb on - strand, within MPMX20_01482at 1553.489 kb on + strand, within MPMX20_01482at 1553.511 kb on + strand, within MPMX20_01482at 1553.516 kb on + strand, within MPMX20_01482at 1553.545 kb on - strand, within MPMX20_01482at 1553.695 kb on + strandat 1553.713 kb on + strandat 1553.722 kb on + strandat 1553.726 kb on - strandat 1553.748 kb on + strandat 1553.756 kb on - strandat 1553.756 kb on - strandat 1553.756 kb on - strandat 1553.756 kb on - strandat 1553.763 kb on + strandat 1553.776 kb on - strandat 1553.837 kb on + strandat 1553.845 kb on - strandat 1553.856 kb on + strandat 1553.856 kb on + strandat 1553.861 kb on + strandat 1553.864 kb on - strandat 1553.891 kb on + strand, within MPMX20_01483at 1553.896 kb on + strand, within MPMX20_01483at 1553.945 kb on + strand, within MPMX20_01483at 1553.968 kb on - strand, within MPMX20_01483at 1554.014 kb on + strand, within MPMX20_01483at 1554.019 kb on + strand, within MPMX20_01483at 1554.021 kb on + strand, within MPMX20_01483at 1554.029 kb on - strand, within MPMX20_01483at 1554.113 kb on + strand, within MPMX20_01483at 1554.217 kb on + strand, within MPMX20_01483at 1554.245 kb on - strand, within MPMX20_01483at 1554.269 kb on + strand, within MPMX20_01483at 1554.303 kb on - strand, within MPMX20_01483at 1554.324 kb on - strand, within MPMX20_01483at 1554.374 kb on + strand, within MPMX20_01483at 1554.426 kb on + strand, within MPMX20_01483at 1554.434 kb on - strand, within MPMX20_01483at 1554.496 kb on + strand, within MPMX20_01483at 1554.499 kb on - strand, within MPMX20_01483at 1554.514 kb on + strand, within MPMX20_01483at 1554.522 kb on - strand, within MPMX20_01483at 1554.537 kb on + strand, within MPMX20_01483at 1554.621 kb on + strand, within MPMX20_01483at 1554.637 kb on + strand, within MPMX20_01483at 1554.645 kb on - strand, within MPMX20_01483at 1554.676 kb on - strand, within MPMX20_01483at 1554.676 kb on - strand, within MPMX20_01483at 1554.680 kb on + strand, within MPMX20_01483at 1554.710 kb on + strand, within MPMX20_01483at 1554.712 kb on + strand, within MPMX20_01483at 1554.718 kb on - strand, within MPMX20_01483at 1554.718 kb on - strand, within MPMX20_01483at 1554.718 kb on - strand, within MPMX20_01483at 1554.718 kb on - strand, within MPMX20_01483at 1554.718 kb on - strand, within MPMX20_01483at 1554.718 kb on - strand, within MPMX20_01483at 1554.767 kb on + strand, within MPMX20_01483at 1554.775 kb on - strand, within MPMX20_01483at 1554.788 kb on + strand, within MPMX20_01483at 1554.826 kb on - strand, within MPMX20_01483at 1554.859 kb on + strandat 1554.859 kb on + strandat 1554.887 kb on - strandat 1554.914 kb on - strandat 1554.939 kb on + strandat 1554.947 kb on - strandat 1554.953 kb on + strandat 1554.962 kb on - strandat 1554.971 kb on - strandat 1555.074 kb on - strandat 1555.098 kb on + strandat 1555.098 kb on + strandat 1555.098 kb on + strandat 1555.098 kb on + strandat 1555.108 kb on + strand, within MPMX20_01484at 1555.116 kb on - strand, within MPMX20_01484at 1555.200 kb on - strand, within MPMX20_01484at 1555.233 kb on + strand, within MPMX20_01484at 1555.322 kb on + strand, within MPMX20_01484at 1555.337 kb on + strand, within MPMX20_01484at 1555.345 kb on - strand, within MPMX20_01484at 1555.381 kb on - strand, within MPMX20_01484at 1555.389 kb on - strand, within MPMX20_01484at 1555.424 kb on - strand, within MPMX20_01484at 1555.434 kb on - strand, within MPMX20_01484at 1555.434 kb on - strand, within MPMX20_01484at 1555.437 kb on + strand, within MPMX20_01484at 1555.440 kb on - strand, within MPMX20_01484at 1555.455 kb on - strand, within MPMX20_01484at 1555.455 kb on - strand, within MPMX20_01484at 1555.467 kb on - strand, within MPMX20_01484at 1555.551 kb on - strandat 1555.698 kb on - strand, within MPMX20_01485at 1555.755 kb on + strand, within MPMX20_01485at 1555.787 kb on + strand, within MPMX20_01485at 1555.798 kb on + strand, within MPMX20_01485at 1555.806 kb on - strand, within MPMX20_01485at 1555.816 kb on - strand, within MPMX20_01485at 1555.816 kb on - strand, within MPMX20_01485at 1555.862 kb on - strand, within MPMX20_01485at 1555.892 kb on + strand, within MPMX20_01485at 1555.900 kb on - strand, within MPMX20_01485at 1555.900 kb on - strand, within MPMX20_01485at 1555.900 kb on - strand, within MPMX20_01485

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075
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1,552,837 - -1.8
1,552,837 - -3.1
1,552,846 + -3.5
1,552,852 + +0.7
1,552,909 - +0.2
1,552,934 + +1.1
1,552,935 + +1.6
1,552,935 + -0.1
1,552,993 + -1.5
1,553,008 - -1.8
1,553,067 + MPMX20_01482 0.15 +1.0
1,553,074 + MPMX20_01482 0.15 +1.2
1,553,074 + MPMX20_01482 0.15 -0.4
1,553,082 - MPMX20_01482 0.16 +2.6
1,553,082 - MPMX20_01482 0.16 -1.6
1,553,148 - MPMX20_01482 0.25 +0.4
1,553,177 + MPMX20_01482 0.28 +1.5
1,553,177 + MPMX20_01482 0.28 -2.1
1,553,213 + MPMX20_01482 0.33 +2.2
1,553,241 + MPMX20_01482 0.36 -1.0
1,553,241 + MPMX20_01482 0.36 -2.1
1,553,241 + MPMX20_01482 0.36 -2.0
1,553,241 + MPMX20_01482 0.36 +0.3
1,553,249 - MPMX20_01482 0.37 -0.4
1,553,249 - MPMX20_01482 0.37 -0.0
1,553,263 + MPMX20_01482 0.39 +2.6
1,553,286 + MPMX20_01482 0.42 +0.5
1,553,297 + MPMX20_01482 0.43 -0.9
1,553,377 - MPMX20_01482 0.53 +1.0
1,553,377 - MPMX20_01482 0.53 -1.0
1,553,399 - MPMX20_01482 0.55 -0.2
1,553,399 - MPMX20_01482 0.55 +3.2
1,553,399 - MPMX20_01482 0.55 +0.4
1,553,426 - MPMX20_01482 0.59 -2.0
1,553,470 + MPMX20_01482 0.64 -2.5
1,553,476 - MPMX20_01482 0.65 -1.6
1,553,489 + MPMX20_01482 0.67 -0.2
1,553,511 + MPMX20_01482 0.69 +0.6
1,553,516 + MPMX20_01482 0.70 +2.1
1,553,545 - MPMX20_01482 0.73 -3.1
1,553,695 + -0.2
1,553,713 + -2.6
1,553,722 + -2.2
1,553,726 - +1.6
1,553,748 + -0.7
1,553,756 - -1.4
1,553,756 - -0.7
1,553,756 - -2.2
1,553,756 - +1.0
1,553,763 + -0.8
1,553,776 - -0.2
1,553,837 + +0.2
1,553,845 - +1.2
1,553,856 + +0.2
1,553,856 + -1.4
1,553,861 + -1.1
1,553,864 - -1.4
1,553,891 + MPMX20_01483 0.12 +0.1
1,553,896 + MPMX20_01483 0.12 -1.5
1,553,945 + MPMX20_01483 0.16 -0.4
1,553,968 - MPMX20_01483 0.18 -0.9
1,554,014 + MPMX20_01483 0.22 -0.4
1,554,019 + MPMX20_01483 0.22 +2.6
1,554,021 + MPMX20_01483 0.22 +0.3
1,554,029 - MPMX20_01483 0.23 -0.9
1,554,113 + MPMX20_01483 0.30 +1.6
1,554,217 + MPMX20_01483 0.38 -1.4
1,554,245 - MPMX20_01483 0.41 +2.6
1,554,269 + MPMX20_01483 0.43 +1.6
1,554,303 - MPMX20_01483 0.46 -0.1
1,554,324 - MPMX20_01483 0.47 -0.9
1,554,374 + MPMX20_01483 0.51 +1.7
1,554,426 + MPMX20_01483 0.56 +0.7
1,554,434 - MPMX20_01483 0.56 -0.7
1,554,496 + MPMX20_01483 0.61 +0.4
1,554,499 - MPMX20_01483 0.62 +3.0
1,554,514 + MPMX20_01483 0.63 +0.5
1,554,522 - MPMX20_01483 0.64 -3.0
1,554,537 + MPMX20_01483 0.65 -1.8
1,554,621 + MPMX20_01483 0.72 -1.1
1,554,637 + MPMX20_01483 0.73 +0.3
1,554,645 - MPMX20_01483 0.74 -1.3
1,554,676 - MPMX20_01483 0.76 -2.5
1,554,676 - MPMX20_01483 0.76 -0.2
1,554,680 + MPMX20_01483 0.77 -1.8
1,554,710 + MPMX20_01483 0.79 -1.1
1,554,712 + MPMX20_01483 0.79 -0.2
1,554,718 - MPMX20_01483 0.80 +1.2
1,554,718 - MPMX20_01483 0.80 +0.4
1,554,718 - MPMX20_01483 0.80 +1.7
1,554,718 - MPMX20_01483 0.80 +0.7
1,554,718 - MPMX20_01483 0.80 -3.4
1,554,718 - MPMX20_01483 0.80 +0.4
1,554,767 + MPMX20_01483 0.84 +2.5
1,554,775 - MPMX20_01483 0.84 -0.3
1,554,788 + MPMX20_01483 0.85 -0.8
1,554,826 - MPMX20_01483 0.89 -1.3
1,554,859 + +0.2
1,554,859 + +1.6
1,554,887 - -0.4
1,554,914 - -0.9
1,554,939 + -3.5
1,554,947 - +1.0
1,554,953 + -0.6
1,554,962 - -0.4
1,554,971 - -0.2
1,555,074 - -0.6
1,555,098 + -0.6
1,555,098 + -2.0
1,555,098 + -0.3
1,555,098 + +0.2
1,555,108 + MPMX20_01484 0.11 -0.6
1,555,116 - MPMX20_01484 0.12 -2.0
1,555,200 - MPMX20_01484 0.28 -1.4
1,555,233 + MPMX20_01484 0.34 -0.2
1,555,322 + MPMX20_01484 0.50 +0.2
1,555,337 + MPMX20_01484 0.53 -2.8
1,555,345 - MPMX20_01484 0.54 -2.3
1,555,381 - MPMX20_01484 0.61 -1.1
1,555,389 - MPMX20_01484 0.62 +1.0
1,555,424 - MPMX20_01484 0.68 -0.0
1,555,434 - MPMX20_01484 0.70 +1.6
1,555,434 - MPMX20_01484 0.70 -0.2
1,555,437 + MPMX20_01484 0.71 -0.0
1,555,440 - MPMX20_01484 0.71 -0.4
1,555,455 - MPMX20_01484 0.74 +1.6
1,555,455 - MPMX20_01484 0.74 -1.0
1,555,467 - MPMX20_01484 0.76 +1.8
1,555,551 - +1.6
1,555,698 - MPMX20_01485 0.13 -1.6
1,555,755 + MPMX20_01485 0.21 +0.2
1,555,787 + MPMX20_01485 0.25 -1.6
1,555,798 + MPMX20_01485 0.26 -0.6
1,555,806 - MPMX20_01485 0.27 +0.7
1,555,816 - MPMX20_01485 0.28 +1.6
1,555,816 - MPMX20_01485 0.28 -0.7
1,555,862 - MPMX20_01485 0.34 +0.4
1,555,892 + MPMX20_01485 0.38 +0.3
1,555,900 - MPMX20_01485 0.39 -2.7
1,555,900 - MPMX20_01485 0.39 +2.1
1,555,900 - MPMX20_01485 0.39 -1.5

Or see this region's nucleotide sequence