Experiment: 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01437 and MPMX20_01438 are separated by 131 nucleotides MPMX20_01438 and MPMX20_01439 overlap by 4 nucleotides MPMX20_01439 and MPMX20_01440 are separated by 84 nucleotides MPMX20_01440 and MPMX20_01441 are separated by 52 nucleotides
MPMX20_01437: MPMX20_01437 - Moderate conductance mechanosensitive channel YbiO, at 1,500,687 to 1,502,897
_01437
MPMX20_01438: MPMX20_01438 - Glutamine transport ATP-binding protein GlnQ, at 1,503,029 to 1,503,751
_01438
MPMX20_01439: MPMX20_01439 - Glutamine transport system permease protein GlnP, at 1,503,748 to 1,504,407
_01439
MPMX20_01440: MPMX20_01440 - Glutamine-binding periplasmic protein, at 1,504,492 to 1,505,235
_01440
MPMX20_01441: MPMX20_01441 - hypothetical protein, at 1,505,288 to 1,505,446
_01441
Position (kb)
1503
1504
1505 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1502.886 kb on + strand at 1502.937 kb on - strand at 1502.941 kb on - strand at 1503.020 kb on - strand at 1503.025 kb on + strand at 1503.050 kb on + strand at 1503.095 kb on - strand at 1503.119 kb on - strand, within MPMX20_01438 at 1503.323 kb on - strand, within MPMX20_01438 at 1503.343 kb on + strand, within MPMX20_01438 at 1503.343 kb on + strand, within MPMX20_01438 at 1503.351 kb on + strand, within MPMX20_01438 at 1503.361 kb on - strand, within MPMX20_01438 at 1503.381 kb on + strand, within MPMX20_01438 at 1503.479 kb on - strand, within MPMX20_01438 at 1503.567 kb on - strand, within MPMX20_01438 at 1503.598 kb on + strand, within MPMX20_01438 at 1503.617 kb on + strand, within MPMX20_01438 at 1503.664 kb on + strand, within MPMX20_01438 at 1503.666 kb on + strand, within MPMX20_01438 at 1503.666 kb on + strand, within MPMX20_01438 at 1503.666 kb on + strand, within MPMX20_01438 at 1503.674 kb on - strand, within MPMX20_01438 at 1503.853 kb on + strand, within MPMX20_01439 at 1503.962 kb on + strand, within MPMX20_01439 at 1504.031 kb on - strand, within MPMX20_01439 at 1504.038 kb on - strand, within MPMX20_01439 at 1504.039 kb on + strand, within MPMX20_01439 at 1504.076 kb on - strand, within MPMX20_01439 at 1504.104 kb on - strand, within MPMX20_01439 at 1504.120 kb on + strand, within MPMX20_01439 at 1504.128 kb on - strand, within MPMX20_01439 at 1504.128 kb on - strand, within MPMX20_01439 at 1504.133 kb on + strand, within MPMX20_01439 at 1504.141 kb on - strand, within MPMX20_01439 at 1504.146 kb on - strand, within MPMX20_01439 at 1504.150 kb on + strand, within MPMX20_01439 at 1504.174 kb on - strand, within MPMX20_01439 at 1504.217 kb on + strand, within MPMX20_01439 at 1504.276 kb on - strand, within MPMX20_01439 at 1504.276 kb on - strand, within MPMX20_01439 at 1504.374 kb on + strand at 1504.404 kb on + strand at 1504.425 kb on + strand at 1504.556 kb on - strand at 1504.556 kb on - strand at 1504.576 kb on - strand, within MPMX20_01440 at 1504.587 kb on + strand, within MPMX20_01440 at 1504.597 kb on + strand, within MPMX20_01440 at 1504.649 kb on + strand, within MPMX20_01440 at 1504.649 kb on + strand, within MPMX20_01440 at 1504.649 kb on + strand, within MPMX20_01440 at 1504.657 kb on - strand, within MPMX20_01440 at 1504.657 kb on - strand, within MPMX20_01440 at 1504.705 kb on + strand, within MPMX20_01440 at 1504.705 kb on + strand, within MPMX20_01440 at 1504.713 kb on - strand, within MPMX20_01440 at 1504.713 kb on - strand, within MPMX20_01440 at 1504.713 kb on - strand, within MPMX20_01440 at 1504.735 kb on - strand, within MPMX20_01440 at 1504.742 kb on + strand, within MPMX20_01440 at 1504.742 kb on + strand, within MPMX20_01440 at 1504.745 kb on - strand, within MPMX20_01440 at 1504.784 kb on - strand, within MPMX20_01440 at 1504.894 kb on - strand, within MPMX20_01440 at 1504.918 kb on - strand, within MPMX20_01440 at 1504.972 kb on + strand, within MPMX20_01440 at 1505.004 kb on + strand, within MPMX20_01440 at 1505.006 kb on + strand, within MPMX20_01440 at 1505.034 kb on + strand, within MPMX20_01440 at 1505.042 kb on + strand, within MPMX20_01440 at 1505.082 kb on + strand, within MPMX20_01440 at 1505.082 kb on + strand, within MPMX20_01440 at 1505.088 kb on + strand, within MPMX20_01440 at 1505.172 kb on + strand at 1505.180 kb on - strand at 1505.180 kb on - strand at 1505.204 kb on - strand at 1505.260 kb on + strand at 1505.385 kb on + strand, within MPMX20_01441 at 1505.397 kb on + strand, within MPMX20_01441 at 1505.403 kb on - strand, within MPMX20_01441 at 1505.405 kb on - strand, within MPMX20_01441 at 1505.405 kb on - strand, within MPMX20_01441
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075 remove 1,502,886 + +2.8 1,502,937 - +1.3 1,502,941 - +2.6 1,503,020 - -3.4 1,503,025 + -2.3 1,503,050 + -1.3 1,503,095 - -0.2 1,503,119 - MPMX20_01438 0.12 -2.3 1,503,323 - MPMX20_01438 0.41 -1.0 1,503,343 + MPMX20_01438 0.43 +0.3 1,503,343 + MPMX20_01438 0.43 -1.0 1,503,351 + MPMX20_01438 0.45 +1.0 1,503,361 - MPMX20_01438 0.46 +0.6 1,503,381 + MPMX20_01438 0.49 +0.3 1,503,479 - MPMX20_01438 0.62 +1.1 1,503,567 - MPMX20_01438 0.74 -1.2 1,503,598 + MPMX20_01438 0.79 -0.0 1,503,617 + MPMX20_01438 0.81 +0.4 1,503,664 + MPMX20_01438 0.88 -0.7 1,503,666 + MPMX20_01438 0.88 -0.9 1,503,666 + MPMX20_01438 0.88 +1.3 1,503,666 + MPMX20_01438 0.88 -1.6 1,503,674 - MPMX20_01438 0.89 -0.0 1,503,853 + MPMX20_01439 0.16 -1.2 1,503,962 + MPMX20_01439 0.32 +0.3 1,504,031 - MPMX20_01439 0.43 +2.0 1,504,038 - MPMX20_01439 0.44 -3.0 1,504,039 + MPMX20_01439 0.44 -1.5 1,504,076 - MPMX20_01439 0.50 -0.6 1,504,104 - MPMX20_01439 0.54 -0.1 1,504,120 + MPMX20_01439 0.56 +1.4 1,504,128 - MPMX20_01439 0.58 -0.2 1,504,128 - MPMX20_01439 0.58 -0.6 1,504,133 + MPMX20_01439 0.58 -0.7 1,504,141 - MPMX20_01439 0.60 -0.6 1,504,146 - MPMX20_01439 0.60 +2.1 1,504,150 + MPMX20_01439 0.61 -0.7 1,504,174 - MPMX20_01439 0.65 +2.0 1,504,217 + MPMX20_01439 0.71 -0.1 1,504,276 - MPMX20_01439 0.80 -0.2 1,504,276 - MPMX20_01439 0.80 -2.0 1,504,374 + +0.4 1,504,404 + -1.9 1,504,425 + -0.6 1,504,556 - -0.3 1,504,556 - -0.0 1,504,576 - MPMX20_01440 0.11 -1.1 1,504,587 + MPMX20_01440 0.13 -0.1 1,504,597 + MPMX20_01440 0.14 +4.2 1,504,649 + MPMX20_01440 0.21 -1.1 1,504,649 + MPMX20_01440 0.21 +0.4 1,504,649 + MPMX20_01440 0.21 -3.3 1,504,657 - MPMX20_01440 0.22 -1.4 1,504,657 - MPMX20_01440 0.22 -1.8 1,504,705 + MPMX20_01440 0.29 -3.6 1,504,705 + MPMX20_01440 0.29 +0.6 1,504,713 - MPMX20_01440 0.30 +0.5 1,504,713 - MPMX20_01440 0.30 +1.3 1,504,713 - MPMX20_01440 0.30 -1.9 1,504,735 - MPMX20_01440 0.33 -3.0 1,504,742 + MPMX20_01440 0.34 -0.0 1,504,742 + MPMX20_01440 0.34 +0.6 1,504,745 - MPMX20_01440 0.34 +1.3 1,504,784 - MPMX20_01440 0.39 +1.1 1,504,894 - MPMX20_01440 0.54 -2.9 1,504,918 - MPMX20_01440 0.57 +0.8 1,504,972 + MPMX20_01440 0.65 -3.9 1,505,004 + MPMX20_01440 0.69 +0.3 1,505,006 + MPMX20_01440 0.69 +1.1 1,505,034 + MPMX20_01440 0.73 +2.6 1,505,042 + MPMX20_01440 0.74 +0.7 1,505,082 + MPMX20_01440 0.79 -1.5 1,505,082 + MPMX20_01440 0.79 -0.6 1,505,088 + MPMX20_01440 0.80 -1.2 1,505,172 + +0.1 1,505,180 - +1.6 1,505,180 - +1.0 1,505,204 - -0.0 1,505,260 + -0.2 1,505,385 + MPMX20_01441 0.61 -1.2 1,505,397 + MPMX20_01441 0.69 -3.4 1,505,403 - MPMX20_01441 0.72 -2.5 1,505,405 - MPMX20_01441 0.74 +0.3 1,505,405 - MPMX20_01441 0.74 -0.2
Or see this region's nucleotide sequence