Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01439

Experiment: 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01437 and MPMX20_01438 are separated by 131 nucleotidesMPMX20_01438 and MPMX20_01439 overlap by 4 nucleotidesMPMX20_01439 and MPMX20_01440 are separated by 84 nucleotidesMPMX20_01440 and MPMX20_01441 are separated by 52 nucleotides MPMX20_01437: MPMX20_01437 - Moderate conductance mechanosensitive channel YbiO, at 1,500,687 to 1,502,897 _01437 MPMX20_01438: MPMX20_01438 - Glutamine transport ATP-binding protein GlnQ, at 1,503,029 to 1,503,751 _01438 MPMX20_01439: MPMX20_01439 - Glutamine transport system permease protein GlnP, at 1,503,748 to 1,504,407 _01439 MPMX20_01440: MPMX20_01440 - Glutamine-binding periplasmic protein, at 1,504,492 to 1,505,235 _01440 MPMX20_01441: MPMX20_01441 - hypothetical protein, at 1,505,288 to 1,505,446 _01441 Position (kb) 1503 1504 1505Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1502.886 kb on + strandat 1502.937 kb on - strandat 1502.941 kb on - strandat 1503.020 kb on - strandat 1503.025 kb on + strandat 1503.050 kb on + strandat 1503.095 kb on - strandat 1503.119 kb on - strand, within MPMX20_01438at 1503.323 kb on - strand, within MPMX20_01438at 1503.343 kb on + strand, within MPMX20_01438at 1503.343 kb on + strand, within MPMX20_01438at 1503.351 kb on + strand, within MPMX20_01438at 1503.361 kb on - strand, within MPMX20_01438at 1503.381 kb on + strand, within MPMX20_01438at 1503.479 kb on - strand, within MPMX20_01438at 1503.567 kb on - strand, within MPMX20_01438at 1503.598 kb on + strand, within MPMX20_01438at 1503.617 kb on + strand, within MPMX20_01438at 1503.664 kb on + strand, within MPMX20_01438at 1503.666 kb on + strand, within MPMX20_01438at 1503.666 kb on + strand, within MPMX20_01438at 1503.666 kb on + strand, within MPMX20_01438at 1503.674 kb on - strand, within MPMX20_01438at 1503.853 kb on + strand, within MPMX20_01439at 1503.962 kb on + strand, within MPMX20_01439at 1504.031 kb on - strand, within MPMX20_01439at 1504.038 kb on - strand, within MPMX20_01439at 1504.039 kb on + strand, within MPMX20_01439at 1504.076 kb on - strand, within MPMX20_01439at 1504.104 kb on - strand, within MPMX20_01439at 1504.120 kb on + strand, within MPMX20_01439at 1504.128 kb on - strand, within MPMX20_01439at 1504.128 kb on - strand, within MPMX20_01439at 1504.133 kb on + strand, within MPMX20_01439at 1504.141 kb on - strand, within MPMX20_01439at 1504.146 kb on - strand, within MPMX20_01439at 1504.150 kb on + strand, within MPMX20_01439at 1504.174 kb on - strand, within MPMX20_01439at 1504.217 kb on + strand, within MPMX20_01439at 1504.276 kb on - strand, within MPMX20_01439at 1504.276 kb on - strand, within MPMX20_01439at 1504.374 kb on + strandat 1504.404 kb on + strandat 1504.425 kb on + strandat 1504.556 kb on - strandat 1504.556 kb on - strandat 1504.576 kb on - strand, within MPMX20_01440at 1504.587 kb on + strand, within MPMX20_01440at 1504.597 kb on + strand, within MPMX20_01440at 1504.649 kb on + strand, within MPMX20_01440at 1504.649 kb on + strand, within MPMX20_01440at 1504.649 kb on + strand, within MPMX20_01440at 1504.657 kb on - strand, within MPMX20_01440at 1504.657 kb on - strand, within MPMX20_01440at 1504.705 kb on + strand, within MPMX20_01440at 1504.705 kb on + strand, within MPMX20_01440at 1504.713 kb on - strand, within MPMX20_01440at 1504.713 kb on - strand, within MPMX20_01440at 1504.713 kb on - strand, within MPMX20_01440at 1504.735 kb on - strand, within MPMX20_01440at 1504.742 kb on + strand, within MPMX20_01440at 1504.742 kb on + strand, within MPMX20_01440at 1504.745 kb on - strand, within MPMX20_01440at 1504.784 kb on - strand, within MPMX20_01440at 1504.894 kb on - strand, within MPMX20_01440at 1504.918 kb on - strand, within MPMX20_01440at 1504.972 kb on + strand, within MPMX20_01440at 1505.004 kb on + strand, within MPMX20_01440at 1505.006 kb on + strand, within MPMX20_01440at 1505.034 kb on + strand, within MPMX20_01440at 1505.042 kb on + strand, within MPMX20_01440at 1505.082 kb on + strand, within MPMX20_01440at 1505.082 kb on + strand, within MPMX20_01440at 1505.088 kb on + strand, within MPMX20_01440at 1505.172 kb on + strandat 1505.180 kb on - strandat 1505.180 kb on - strandat 1505.204 kb on - strandat 1505.260 kb on + strandat 1505.385 kb on + strand, within MPMX20_01441at 1505.397 kb on + strand, within MPMX20_01441at 1505.403 kb on - strand, within MPMX20_01441at 1505.405 kb on - strand, within MPMX20_01441at 1505.405 kb on - strand, within MPMX20_01441

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075
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1,502,886 + +2.8
1,502,937 - +1.3
1,502,941 - +2.6
1,503,020 - -3.4
1,503,025 + -2.3
1,503,050 + -1.3
1,503,095 - -0.2
1,503,119 - MPMX20_01438 0.12 -2.3
1,503,323 - MPMX20_01438 0.41 -1.0
1,503,343 + MPMX20_01438 0.43 +0.3
1,503,343 + MPMX20_01438 0.43 -1.0
1,503,351 + MPMX20_01438 0.45 +1.0
1,503,361 - MPMX20_01438 0.46 +0.6
1,503,381 + MPMX20_01438 0.49 +0.3
1,503,479 - MPMX20_01438 0.62 +1.1
1,503,567 - MPMX20_01438 0.74 -1.2
1,503,598 + MPMX20_01438 0.79 -0.0
1,503,617 + MPMX20_01438 0.81 +0.4
1,503,664 + MPMX20_01438 0.88 -0.7
1,503,666 + MPMX20_01438 0.88 -0.9
1,503,666 + MPMX20_01438 0.88 +1.3
1,503,666 + MPMX20_01438 0.88 -1.6
1,503,674 - MPMX20_01438 0.89 -0.0
1,503,853 + MPMX20_01439 0.16 -1.2
1,503,962 + MPMX20_01439 0.32 +0.3
1,504,031 - MPMX20_01439 0.43 +2.0
1,504,038 - MPMX20_01439 0.44 -3.0
1,504,039 + MPMX20_01439 0.44 -1.5
1,504,076 - MPMX20_01439 0.50 -0.6
1,504,104 - MPMX20_01439 0.54 -0.1
1,504,120 + MPMX20_01439 0.56 +1.4
1,504,128 - MPMX20_01439 0.58 -0.2
1,504,128 - MPMX20_01439 0.58 -0.6
1,504,133 + MPMX20_01439 0.58 -0.7
1,504,141 - MPMX20_01439 0.60 -0.6
1,504,146 - MPMX20_01439 0.60 +2.1
1,504,150 + MPMX20_01439 0.61 -0.7
1,504,174 - MPMX20_01439 0.65 +2.0
1,504,217 + MPMX20_01439 0.71 -0.1
1,504,276 - MPMX20_01439 0.80 -0.2
1,504,276 - MPMX20_01439 0.80 -2.0
1,504,374 + +0.4
1,504,404 + -1.9
1,504,425 + -0.6
1,504,556 - -0.3
1,504,556 - -0.0
1,504,576 - MPMX20_01440 0.11 -1.1
1,504,587 + MPMX20_01440 0.13 -0.1
1,504,597 + MPMX20_01440 0.14 +4.2
1,504,649 + MPMX20_01440 0.21 -1.1
1,504,649 + MPMX20_01440 0.21 +0.4
1,504,649 + MPMX20_01440 0.21 -3.3
1,504,657 - MPMX20_01440 0.22 -1.4
1,504,657 - MPMX20_01440 0.22 -1.8
1,504,705 + MPMX20_01440 0.29 -3.6
1,504,705 + MPMX20_01440 0.29 +0.6
1,504,713 - MPMX20_01440 0.30 +0.5
1,504,713 - MPMX20_01440 0.30 +1.3
1,504,713 - MPMX20_01440 0.30 -1.9
1,504,735 - MPMX20_01440 0.33 -3.0
1,504,742 + MPMX20_01440 0.34 -0.0
1,504,742 + MPMX20_01440 0.34 +0.6
1,504,745 - MPMX20_01440 0.34 +1.3
1,504,784 - MPMX20_01440 0.39 +1.1
1,504,894 - MPMX20_01440 0.54 -2.9
1,504,918 - MPMX20_01440 0.57 +0.8
1,504,972 + MPMX20_01440 0.65 -3.9
1,505,004 + MPMX20_01440 0.69 +0.3
1,505,006 + MPMX20_01440 0.69 +1.1
1,505,034 + MPMX20_01440 0.73 +2.6
1,505,042 + MPMX20_01440 0.74 +0.7
1,505,082 + MPMX20_01440 0.79 -1.5
1,505,082 + MPMX20_01440 0.79 -0.6
1,505,088 + MPMX20_01440 0.80 -1.2
1,505,172 + +0.1
1,505,180 - +1.6
1,505,180 - +1.0
1,505,204 - -0.0
1,505,260 + -0.2
1,505,385 + MPMX20_01441 0.61 -1.2
1,505,397 + MPMX20_01441 0.69 -3.4
1,505,403 - MPMX20_01441 0.72 -2.5
1,505,405 - MPMX20_01441 0.74 +0.3
1,505,405 - MPMX20_01441 0.74 -0.2

Or see this region's nucleotide sequence