Experiment: 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00881 and MPMX20_00882 are separated by 40 nucleotides MPMX20_00882 and MPMX20_00883 overlap by 8 nucleotides MPMX20_00883 and MPMX20_00884 are separated by 188 nucleotides
MPMX20_00881: MPMX20_00881 - D-methionine-binding lipoprotein MetQ, at 930,649 to 931,464
_00881
MPMX20_00882: MPMX20_00882 - D-methionine transport system permease protein MetI, at 931,505 to 932,158
_00882
MPMX20_00883: MPMX20_00883 - Methionine import ATP-binding protein MetN, at 932,151 to 933,182
_00883
MPMX20_00884: MPMX20_00884 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase, at 933,371 to 933,937
_00884
Position (kb)
932
933
934 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 931.158 kb on + strand, within MPMX20_00881 at 931.166 kb on - strand, within MPMX20_00881 at 931.191 kb on + strand, within MPMX20_00881 at 931.199 kb on - strand, within MPMX20_00881 at 931.204 kb on - strand, within MPMX20_00881 at 931.229 kb on + strand, within MPMX20_00881 at 931.230 kb on - strand, within MPMX20_00881 at 931.297 kb on + strand, within MPMX20_00881 at 931.338 kb on + strand, within MPMX20_00881 at 931.350 kb on + strand, within MPMX20_00881 at 931.369 kb on - strand, within MPMX20_00881 at 931.397 kb on + strand at 931.415 kb on - strand at 931.434 kb on + strand at 931.465 kb on + strand at 931.473 kb on - strand at 931.473 kb on - strand at 931.493 kb on - strand at 931.497 kb on + strand at 931.520 kb on + strand at 931.521 kb on + strand at 931.539 kb on + strand at 931.557 kb on - strand at 931.562 kb on - strand at 931.595 kb on - strand, within MPMX20_00882 at 931.617 kb on + strand, within MPMX20_00882 at 931.647 kb on - strand, within MPMX20_00882 at 931.648 kb on - strand, within MPMX20_00882 at 931.665 kb on - strand, within MPMX20_00882 at 931.670 kb on - strand, within MPMX20_00882 at 931.680 kb on - strand, within MPMX20_00882 at 931.699 kb on + strand, within MPMX20_00882 at 931.699 kb on + strand, within MPMX20_00882 at 931.699 kb on + strand, within MPMX20_00882 at 931.707 kb on - strand, within MPMX20_00882 at 931.730 kb on - strand, within MPMX20_00882 at 931.734 kb on + strand, within MPMX20_00882 at 931.742 kb on - strand, within MPMX20_00882 at 931.799 kb on + strand, within MPMX20_00882 at 931.861 kb on + strand, within MPMX20_00882 at 931.904 kb on - strand, within MPMX20_00882 at 931.960 kb on + strand, within MPMX20_00882 at 931.968 kb on - strand, within MPMX20_00882 at 931.968 kb on - strand, within MPMX20_00882 at 931.968 kb on - strand, within MPMX20_00882 at 931.974 kb on + strand, within MPMX20_00882 at 931.982 kb on - strand, within MPMX20_00882 at 931.982 kb on - strand, within MPMX20_00882 at 931.984 kb on + strand, within MPMX20_00882 at 931.992 kb on - strand, within MPMX20_00882 at 932.001 kb on - strand, within MPMX20_00882 at 932.003 kb on - strand, within MPMX20_00882 at 932.006 kb on - strand, within MPMX20_00882 at 932.021 kb on + strand, within MPMX20_00882 at 932.048 kb on - strand, within MPMX20_00882 at 932.155 kb on + strand at 932.181 kb on - strand at 932.259 kb on + strand, within MPMX20_00883 at 932.267 kb on - strand, within MPMX20_00883 at 932.280 kb on - strand, within MPMX20_00883 at 932.309 kb on + strand, within MPMX20_00883 at 932.309 kb on + strand, within MPMX20_00883 at 932.317 kb on - strand, within MPMX20_00883 at 932.326 kb on + strand, within MPMX20_00883 at 932.326 kb on + strand, within MPMX20_00883 at 932.352 kb on + strand, within MPMX20_00883 at 932.367 kb on + strand, within MPMX20_00883 at 932.376 kb on - strand, within MPMX20_00883 at 932.399 kb on - strand, within MPMX20_00883 at 932.449 kb on + strand, within MPMX20_00883 at 932.458 kb on - strand, within MPMX20_00883 at 932.493 kb on + strand, within MPMX20_00883 at 932.590 kb on + strand, within MPMX20_00883 at 932.604 kb on + strand, within MPMX20_00883 at 932.622 kb on + strand, within MPMX20_00883 at 932.622 kb on + strand, within MPMX20_00883 at 932.637 kb on - strand, within MPMX20_00883 at 932.798 kb on - strand, within MPMX20_00883 at 932.811 kb on - strand, within MPMX20_00883 at 932.880 kb on + strand, within MPMX20_00883 at 932.888 kb on + strand, within MPMX20_00883 at 932.906 kb on + strand, within MPMX20_00883 at 932.914 kb on - strand, within MPMX20_00883 at 932.952 kb on - strand, within MPMX20_00883 at 932.986 kb on - strand, within MPMX20_00883 at 932.988 kb on + strand, within MPMX20_00883 at 932.993 kb on + strand, within MPMX20_00883 at 933.003 kb on + strand, within MPMX20_00883 at 933.003 kb on + strand, within MPMX20_00883 at 933.003 kb on + strand, within MPMX20_00883 at 933.003 kb on + strand, within MPMX20_00883 at 933.003 kb on + strand, within MPMX20_00883 at 933.003 kb on + strand, within MPMX20_00883 at 933.010 kb on + strand, within MPMX20_00883 at 933.011 kb on - strand, within MPMX20_00883 at 933.011 kb on - strand, within MPMX20_00883 at 933.011 kb on - strand, within MPMX20_00883 at 933.016 kb on - strand, within MPMX20_00883 at 933.034 kb on - strand, within MPMX20_00883 at 933.034 kb on - strand, within MPMX20_00883 at 933.056 kb on - strand, within MPMX20_00883 at 933.084 kb on + strand at 933.092 kb on - strand at 933.107 kb on + strand at 933.115 kb on - strand at 933.115 kb on - strand at 933.239 kb on - strand at 933.287 kb on - strand at 933.533 kb on - strand, within MPMX20_00884 at 933.770 kb on - strand, within MPMX20_00884
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075 remove 931,158 + MPMX20_00881 0.62 -0.1 931,166 - MPMX20_00881 0.63 -0.9 931,191 + MPMX20_00881 0.66 +5.3 931,199 - MPMX20_00881 0.67 -0.0 931,204 - MPMX20_00881 0.68 +0.4 931,229 + MPMX20_00881 0.71 -0.5 931,230 - MPMX20_00881 0.71 +0.2 931,297 + MPMX20_00881 0.79 -0.1 931,338 + MPMX20_00881 0.84 +2.5 931,350 + MPMX20_00881 0.86 +0.3 931,369 - MPMX20_00881 0.88 +5.5 931,397 + -0.1 931,415 - +3.5 931,434 + -1.7 931,465 + +0.9 931,473 - -1.5 931,473 - +0.9 931,493 - -1.6 931,497 + +0.1 931,520 + -0.5 931,521 + -1.6 931,539 + +1.9 931,557 - +1.0 931,562 - -1.6 931,595 - MPMX20_00882 0.14 -2.5 931,617 + MPMX20_00882 0.17 -1.9 931,647 - MPMX20_00882 0.22 +0.9 931,648 - MPMX20_00882 0.22 +1.0 931,665 - MPMX20_00882 0.24 +0.9 931,670 - MPMX20_00882 0.25 +0.5 931,680 - MPMX20_00882 0.27 +0.1 931,699 + MPMX20_00882 0.30 -2.9 931,699 + MPMX20_00882 0.30 +0.7 931,699 + MPMX20_00882 0.30 +0.5 931,707 - MPMX20_00882 0.31 -3.7 931,730 - MPMX20_00882 0.34 -2.3 931,734 + MPMX20_00882 0.35 +0.1 931,742 - MPMX20_00882 0.36 +1.4 931,799 + MPMX20_00882 0.45 +1.5 931,861 + MPMX20_00882 0.54 -4.8 931,904 - MPMX20_00882 0.61 -1.5 931,960 + MPMX20_00882 0.70 +1.0 931,968 - MPMX20_00882 0.71 -1.7 931,968 - MPMX20_00882 0.71 +3.0 931,968 - MPMX20_00882 0.71 -1.7 931,974 + MPMX20_00882 0.72 +0.3 931,982 - MPMX20_00882 0.73 +1.2 931,982 - MPMX20_00882 0.73 -3.0 931,984 + MPMX20_00882 0.73 -0.2 931,992 - MPMX20_00882 0.74 +2.9 932,001 - MPMX20_00882 0.76 -0.5 932,003 - MPMX20_00882 0.76 +0.4 932,006 - MPMX20_00882 0.77 -1.1 932,021 + MPMX20_00882 0.79 -1.6 932,048 - MPMX20_00882 0.83 -2.7 932,155 + -1.8 932,181 - -0.5 932,259 + MPMX20_00883 0.10 -0.5 932,267 - MPMX20_00883 0.11 +0.9 932,280 - MPMX20_00883 0.12 -0.4 932,309 + MPMX20_00883 0.15 -1.4 932,309 + MPMX20_00883 0.15 -0.1 932,317 - MPMX20_00883 0.16 +1.5 932,326 + MPMX20_00883 0.17 +0.2 932,326 + MPMX20_00883 0.17 -3.5 932,352 + MPMX20_00883 0.19 +2.1 932,367 + MPMX20_00883 0.21 +0.9 932,376 - MPMX20_00883 0.22 -3.1 932,399 - MPMX20_00883 0.24 -0.1 932,449 + MPMX20_00883 0.29 +0.5 932,458 - MPMX20_00883 0.30 -0.3 932,493 + MPMX20_00883 0.33 -0.3 932,590 + MPMX20_00883 0.43 +1.3 932,604 + MPMX20_00883 0.44 -1.1 932,622 + MPMX20_00883 0.46 -0.5 932,622 + MPMX20_00883 0.46 -1.7 932,637 - MPMX20_00883 0.47 -2.2 932,798 - MPMX20_00883 0.63 -2.3 932,811 - MPMX20_00883 0.64 -2.0 932,880 + MPMX20_00883 0.71 -1.5 932,888 + MPMX20_00883 0.71 -1.0 932,906 + MPMX20_00883 0.73 +1.3 932,914 - MPMX20_00883 0.74 -3.1 932,952 - MPMX20_00883 0.78 +1.5 932,986 - MPMX20_00883 0.81 +1.5 932,988 + MPMX20_00883 0.81 -1.6 932,993 + MPMX20_00883 0.82 -0.6 933,003 + MPMX20_00883 0.83 +0.5 933,003 + MPMX20_00883 0.83 -0.7 933,003 + MPMX20_00883 0.83 -0.6 933,003 + MPMX20_00883 0.83 -1.7 933,003 + MPMX20_00883 0.83 -0.9 933,003 + MPMX20_00883 0.83 -0.1 933,010 + MPMX20_00883 0.83 -0.7 933,011 - MPMX20_00883 0.83 -3.1 933,011 - MPMX20_00883 0.83 +0.7 933,011 - MPMX20_00883 0.83 -3.4 933,016 - MPMX20_00883 0.84 +1.3 933,034 - MPMX20_00883 0.86 -1.3 933,034 - MPMX20_00883 0.86 -2.1 933,056 - MPMX20_00883 0.88 -1.0 933,084 + -1.8 933,092 - -2.9 933,107 + +1.0 933,115 - +1.8 933,115 - +0.6 933,239 - -2.8 933,287 - -0.7 933,533 - MPMX20_00884 0.29 +1.5 933,770 - MPMX20_00884 0.70 +0.2
Or see this region's nucleotide sequence