Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00802

Experiment: 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00800 and MPMX20_00801 are separated by 87 nucleotidesMPMX20_00801 and MPMX20_00802 are separated by 9 nucleotidesMPMX20_00802 and MPMX20_00803 are separated by 18 nucleotidesMPMX20_00803 and MPMX20_00804 are separated by 10 nucleotides MPMX20_00800: MPMX20_00800 - Nicotinate-nucleotide pyrophosphorylase [carboxylating], at 836,616 to 837,509 _00800 MPMX20_00801: MPMX20_00801 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 837,597 to 838,148 _00801 MPMX20_00802: MPMX20_00802 - Protein AmpE, at 838,158 to 839,012 _00802 MPMX20_00803: MPMX20_00803 - Extracellular exo-alpha-(1->5)-L-arabinofuranosidase, at 839,031 to 839,981 _00803 MPMX20_00804: MPMX20_00804 - Inner membrane symporter YicJ, at 839,992 to 841,389 _00804 Position (kb) 838 839 840Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 837.198 kb on - strand, within MPMX20_00800at 837.284 kb on + strand, within MPMX20_00800at 837.284 kb on + strand, within MPMX20_00800at 837.289 kb on + strand, within MPMX20_00800at 837.425 kb on + strandat 837.492 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.558 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.632 kb on + strandat 837.640 kb on - strandat 837.685 kb on - strand, within MPMX20_00801at 837.831 kb on - strand, within MPMX20_00801at 837.849 kb on - strand, within MPMX20_00801at 837.937 kb on + strand, within MPMX20_00801at 838.000 kb on - strand, within MPMX20_00801at 838.006 kb on + strand, within MPMX20_00801at 838.289 kb on + strand, within MPMX20_00802at 838.289 kb on + strand, within MPMX20_00802at 838.297 kb on - strand, within MPMX20_00802at 838.297 kb on - strand, within MPMX20_00802at 838.297 kb on - strand, within MPMX20_00802at 838.399 kb on + strand, within MPMX20_00802at 838.399 kb on + strand, within MPMX20_00802at 838.427 kb on + strand, within MPMX20_00802at 838.573 kb on - strand, within MPMX20_00802at 838.573 kb on - strand, within MPMX20_00802at 838.588 kb on + strand, within MPMX20_00802at 838.596 kb on + strand, within MPMX20_00802at 838.601 kb on + strand, within MPMX20_00802at 838.606 kb on + strand, within MPMX20_00802at 838.609 kb on - strand, within MPMX20_00802at 838.614 kb on - strand, within MPMX20_00802at 838.621 kb on + strand, within MPMX20_00802at 838.673 kb on + strand, within MPMX20_00802at 838.681 kb on - strand, within MPMX20_00802at 838.681 kb on - strand, within MPMX20_00802at 838.690 kb on + strand, within MPMX20_00802at 838.690 kb on + strand, within MPMX20_00802at 838.698 kb on - strand, within MPMX20_00802at 838.698 kb on - strand, within MPMX20_00802at 838.740 kb on + strand, within MPMX20_00802at 838.767 kb on - strand, within MPMX20_00802at 838.860 kb on - strand, within MPMX20_00802at 838.880 kb on + strand, within MPMX20_00802at 838.899 kb on - strand, within MPMX20_00802at 839.006 kb on + strandat 839.014 kb on - strandat 839.014 kb on - strandat 839.024 kb on + strandat 839.024 kb on + strandat 839.024 kb on + strandat 839.032 kb on - strandat 839.037 kb on - strandat 839.135 kb on - strand, within MPMX20_00803at 839.142 kb on - strand, within MPMX20_00803at 839.154 kb on - strand, within MPMX20_00803at 839.161 kb on + strand, within MPMX20_00803at 839.161 kb on + strand, within MPMX20_00803at 839.161 kb on + strand, within MPMX20_00803at 839.169 kb on - strand, within MPMX20_00803at 839.169 kb on - strand, within MPMX20_00803at 839.169 kb on - strand, within MPMX20_00803at 839.303 kb on + strand, within MPMX20_00803at 839.313 kb on + strand, within MPMX20_00803at 839.321 kb on - strand, within MPMX20_00803at 839.331 kb on + strand, within MPMX20_00803at 839.377 kb on - strand, within MPMX20_00803at 839.471 kb on - strand, within MPMX20_00803at 839.498 kb on + strand, within MPMX20_00803at 839.498 kb on + strand, within MPMX20_00803at 839.506 kb on - strand, within MPMX20_00803at 839.523 kb on + strand, within MPMX20_00803at 839.623 kb on + strand, within MPMX20_00803at 839.659 kb on + strand, within MPMX20_00803at 839.659 kb on + strand, within MPMX20_00803at 839.664 kb on + strand, within MPMX20_00803at 839.693 kb on + strand, within MPMX20_00803at 839.701 kb on - strand, within MPMX20_00803at 839.703 kb on + strand, within MPMX20_00803at 839.711 kb on - strand, within MPMX20_00803at 839.714 kb on + strand, within MPMX20_00803at 839.799 kb on + strand, within MPMX20_00803at 839.828 kb on + strand, within MPMX20_00803at 839.846 kb on + strand, within MPMX20_00803at 839.846 kb on + strand, within MPMX20_00803at 839.846 kb on - strand, within MPMX20_00803at 839.891 kb on + strandat 839.905 kb on + strandat 839.905 kb on + strandat 839.915 kb on + strandat 839.973 kb on + strandat 839.981 kb on - strandat 840.008 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075
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837,198 - MPMX20_00800 0.65 +0.5
837,284 + MPMX20_00800 0.75 +0.0
837,284 + MPMX20_00800 0.75 -0.9
837,289 + MPMX20_00800 0.75 -0.9
837,425 + -0.1
837,492 + -2.1
837,555 + -1.9
837,555 + +1.3
837,555 + -1.0
837,555 + -0.9
837,555 + +0.1
837,555 + +0.4
837,555 + -3.4
837,555 + +0.1
837,555 + -0.6
837,555 + -1.6
837,558 - -0.6
837,563 - -2.5
837,563 - +0.4
837,563 - -3.3
837,563 - -1.5
837,563 - -3.2
837,563 - -2.3
837,563 - -1.6
837,563 - +0.9
837,632 + +0.4
837,640 - +1.6
837,685 - MPMX20_00801 0.16 +0.1
837,831 - MPMX20_00801 0.42 -2.5
837,849 - MPMX20_00801 0.46 -1.0
837,937 + MPMX20_00801 0.62 -1.8
838,000 - MPMX20_00801 0.73 -0.4
838,006 + MPMX20_00801 0.74 -1.3
838,289 + MPMX20_00802 0.15 +1.2
838,289 + MPMX20_00802 0.15 -0.0
838,297 - MPMX20_00802 0.16 -1.3
838,297 - MPMX20_00802 0.16 -1.4
838,297 - MPMX20_00802 0.16 -0.6
838,399 + MPMX20_00802 0.28 +0.4
838,399 + MPMX20_00802 0.28 +0.0
838,427 + MPMX20_00802 0.31 -0.3
838,573 - MPMX20_00802 0.49 +2.0
838,573 - MPMX20_00802 0.49 -0.6
838,588 + MPMX20_00802 0.50 -2.3
838,596 + MPMX20_00802 0.51 -2.2
838,601 + MPMX20_00802 0.52 +0.8
838,606 + MPMX20_00802 0.52 +0.4
838,609 - MPMX20_00802 0.53 -0.8
838,614 - MPMX20_00802 0.53 +0.9
838,621 + MPMX20_00802 0.54 -2.0
838,673 + MPMX20_00802 0.60 -0.6
838,681 - MPMX20_00802 0.61 +2.9
838,681 - MPMX20_00802 0.61 -1.6
838,690 + MPMX20_00802 0.62 +1.6
838,690 + MPMX20_00802 0.62 -1.7
838,698 - MPMX20_00802 0.63 +0.9
838,698 - MPMX20_00802 0.63 +0.9
838,740 + MPMX20_00802 0.68 -0.2
838,767 - MPMX20_00802 0.71 -2.3
838,860 - MPMX20_00802 0.82 -2.6
838,880 + MPMX20_00802 0.84 +1.3
838,899 - MPMX20_00802 0.87 +6.2
839,006 + -2.3
839,014 - +0.9
839,014 - -0.4
839,024 + -2.7
839,024 + -2.5
839,024 + +2.4
839,032 - -1.3
839,037 - +0.0
839,135 - MPMX20_00803 0.11 -0.4
839,142 - MPMX20_00803 0.12 -1.3
839,154 - MPMX20_00803 0.13 +3.0
839,161 + MPMX20_00803 0.14 +0.1
839,161 + MPMX20_00803 0.14 -0.7
839,161 + MPMX20_00803 0.14 -1.5
839,169 - MPMX20_00803 0.15 -2.4
839,169 - MPMX20_00803 0.15 -2.6
839,169 - MPMX20_00803 0.15 -1.6
839,303 + MPMX20_00803 0.29 +0.4
839,313 + MPMX20_00803 0.30 -1.1
839,321 - MPMX20_00803 0.30 -0.6
839,331 + MPMX20_00803 0.32 -0.9
839,377 - MPMX20_00803 0.36 +0.4
839,471 - MPMX20_00803 0.46 -0.3
839,498 + MPMX20_00803 0.49 -1.8
839,498 + MPMX20_00803 0.49 -0.1
839,506 - MPMX20_00803 0.50 -3.3
839,523 + MPMX20_00803 0.52 -0.8
839,623 + MPMX20_00803 0.62 -2.1
839,659 + MPMX20_00803 0.66 +1.4
839,659 + MPMX20_00803 0.66 +0.2
839,664 + MPMX20_00803 0.67 +1.4
839,693 + MPMX20_00803 0.70 +0.9
839,701 - MPMX20_00803 0.70 +0.3
839,703 + MPMX20_00803 0.71 +0.6
839,711 - MPMX20_00803 0.72 +0.4
839,714 + MPMX20_00803 0.72 +1.6
839,799 + MPMX20_00803 0.81 +2.4
839,828 + MPMX20_00803 0.84 -1.6
839,846 + MPMX20_00803 0.86 -2.1
839,846 + MPMX20_00803 0.86 +0.1
839,846 - MPMX20_00803 0.86 -1.3
839,891 + -3.1
839,905 + +0.0
839,905 + -0.7
839,915 + -2.8
839,973 + +0.4
839,981 - -1.3
840,008 + +0.4

Or see this region's nucleotide sequence