Experiment: 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00017 and MPMX20_00018 overlap by 33 nucleotides MPMX20_00018 and MPMX20_00019 are separated by 223 nucleotides
MPMX20_00017: MPMX20_00017 - Aspartate/alanine antiporter, at 17,205 to 18,866
_00017
MPMX20_00018: MPMX20_00018 - Mannosyl-D-glycerate transport/metabolism system repressor MngR, at 18,834 to 19,580
_00018
MPMX20_00019: MPMX20_00019 - hypothetical protein, at 19,804 to 21,426
_00019
Position (kb) 18
19
20 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 17.849 kb on + strand, within MPMX20_00017 at 17.857 kb on - strand, within MPMX20_00017 at 17.875 kb on + strand, within MPMX20_00017 at 17.880 kb on + strand, within MPMX20_00017 at 17.888 kb on - strand, within MPMX20_00017 at 17.888 kb on - strand, within MPMX20_00017 at 17.888 kb on - strand, within MPMX20_00017 at 17.912 kb on + strand, within MPMX20_00017 at 17.912 kb on + strand, within MPMX20_00017 at 17.920 kb on - strand, within MPMX20_00017 at 17.929 kb on + strand, within MPMX20_00017 at 17.941 kb on - strand, within MPMX20_00017 at 17.965 kb on + strand, within MPMX20_00017 at 17.993 kb on + strand, within MPMX20_00017 at 18.000 kb on + strand, within MPMX20_00017 at 18.008 kb on - strand, within MPMX20_00017 at 18.035 kb on + strand, within MPMX20_00017 at 18.035 kb on + strand, within MPMX20_00017 at 18.035 kb on + strand, within MPMX20_00017 at 18.069 kb on - strand, within MPMX20_00017 at 18.087 kb on + strand, within MPMX20_00017 at 18.143 kb on + strand, within MPMX20_00017 at 18.231 kb on - strand, within MPMX20_00017 at 18.236 kb on - strand, within MPMX20_00017 at 18.281 kb on + strand, within MPMX20_00017 at 18.324 kb on + strand, within MPMX20_00017 at 18.340 kb on + strand, within MPMX20_00017 at 18.400 kb on + strand, within MPMX20_00017 at 18.478 kb on - strand, within MPMX20_00017 at 18.517 kb on + strand, within MPMX20_00017 at 18.586 kb on - strand, within MPMX20_00017 at 18.592 kb on - strand, within MPMX20_00017 at 18.599 kb on - strand, within MPMX20_00017 at 18.682 kb on + strand, within MPMX20_00017 at 18.690 kb on - strand, within MPMX20_00017 at 18.724 kb on + strand at 18.737 kb on - strand at 18.741 kb on + strand at 18.785 kb on + strand at 18.787 kb on - strand at 18.787 kb on - strand at 18.820 kb on + strand at 18.828 kb on - strand at 18.828 kb on - strand at 18.833 kb on + strand at 18.848 kb on + strand at 18.854 kb on + strand at 19.016 kb on + strand, within MPMX20_00018 at 19.065 kb on + strand, within MPMX20_00018 at 19.119 kb on + strand, within MPMX20_00018 at 19.127 kb on - strand, within MPMX20_00018 at 19.151 kb on + strand, within MPMX20_00018 at 19.178 kb on - strand, within MPMX20_00018 at 19.254 kb on + strand, within MPMX20_00018 at 19.290 kb on - strand, within MPMX20_00018 at 19.302 kb on + strand, within MPMX20_00018 at 19.312 kb on + strand, within MPMX20_00018 at 19.333 kb on + strand, within MPMX20_00018 at 19.337 kb on + strand, within MPMX20_00018 at 19.419 kb on - strand, within MPMX20_00018 at 19.493 kb on + strand, within MPMX20_00018 at 19.547 kb on + strand at 19.599 kb on + strand at 19.599 kb on + strand at 19.599 kb on + strand at 19.599 kb on + strand at 19.599 kb on + strand at 19.599 kb on + strand at 19.599 kb on + strand at 19.599 kb on + strand at 19.599 kb on + strand at 19.599 kb on + strand at 19.607 kb on - strand at 19.607 kb on - strand at 19.607 kb on - strand at 19.607 kb on - strand at 19.607 kb on - strand at 19.607 kb on - strand at 19.616 kb on - strand at 19.658 kb on - strand at 19.728 kb on - strand at 19.733 kb on + strand at 19.738 kb on + strand at 19.746 kb on - strand at 19.766 kb on + strand at 19.774 kb on - strand at 19.782 kb on - strand at 19.790 kb on - strand at 19.811 kb on + strand at 19.847 kb on - strand at 19.852 kb on - strand at 19.889 kb on + strand at 19.897 kb on - strand at 19.924 kb on + strand at 19.924 kb on + strand at 19.945 kb on - strand at 19.960 kb on + strand at 19.967 kb on + strand, within MPMX20_00019 at 19.969 kb on + strand, within MPMX20_00019 at 20.074 kb on + strand, within MPMX20_00019 at 20.074 kb on - strand, within MPMX20_00019 at 20.076 kb on + strand, within MPMX20_00019 at 20.118 kb on + strand, within MPMX20_00019 at 20.260 kb on + strand, within MPMX20_00019 at 20.260 kb on + strand, within MPMX20_00019 at 20.283 kb on + strand, within MPMX20_00019 at 20.454 kb on + strand, within MPMX20_00019 at 20.455 kb on + strand, within MPMX20_00019 at 20.463 kb on - strand, within MPMX20_00019 at 20.463 kb on - strand, within MPMX20_00019 at 20.523 kb on - strand, within MPMX20_00019 at 20.547 kb on - strand, within MPMX20_00019
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Lysobacter soli TBS_075 remove 17,849 + MPMX20_00017 0.39 -1.3 17,857 - MPMX20_00017 0.39 -3.4 17,875 + MPMX20_00017 0.40 -1.5 17,880 + MPMX20_00017 0.41 -3.0 17,888 - MPMX20_00017 0.41 +1.3 17,888 - MPMX20_00017 0.41 +1.5 17,888 - MPMX20_00017 0.41 -0.4 17,912 + MPMX20_00017 0.43 -0.1 17,912 + MPMX20_00017 0.43 -0.3 17,920 - MPMX20_00017 0.43 -1.3 17,929 + MPMX20_00017 0.44 -1.1 17,941 - MPMX20_00017 0.44 -3.7 17,965 + MPMX20_00017 0.46 -0.6 17,993 + MPMX20_00017 0.47 -3.8 18,000 + MPMX20_00017 0.48 +2.2 18,008 - MPMX20_00017 0.48 -3.0 18,035 + MPMX20_00017 0.50 -2.1 18,035 + MPMX20_00017 0.50 -2.8 18,035 + MPMX20_00017 0.50 -0.5 18,069 - MPMX20_00017 0.52 -0.1 18,087 + MPMX20_00017 0.53 -2.4 18,143 + MPMX20_00017 0.56 -1.7 18,231 - MPMX20_00017 0.62 +0.7 18,236 - MPMX20_00017 0.62 +2.0 18,281 + MPMX20_00017 0.65 +0.7 18,324 + MPMX20_00017 0.67 +0.3 18,340 + MPMX20_00017 0.68 -1.8 18,400 + MPMX20_00017 0.72 -0.0 18,478 - MPMX20_00017 0.77 -1.4 18,517 + MPMX20_00017 0.79 -0.0 18,586 - MPMX20_00017 0.83 -2.6 18,592 - MPMX20_00017 0.83 -2.8 18,599 - MPMX20_00017 0.84 -0.2 18,682 + MPMX20_00017 0.89 +2.3 18,690 - MPMX20_00017 0.89 +0.9 18,724 + -2.2 18,737 - -0.7 18,741 + +2.3 18,785 + -1.4 18,787 - -1.1 18,787 - +0.3 18,820 + -1.4 18,828 - -2.1 18,828 - -1.7 18,833 + -2.0 18,848 + -1.0 18,854 + +0.1 19,016 + MPMX20_00018 0.24 +8.3 19,065 + MPMX20_00018 0.31 -0.2 19,119 + MPMX20_00018 0.38 +1.7 19,127 - MPMX20_00018 0.39 +0.5 19,151 + MPMX20_00018 0.42 +1.0 19,178 - MPMX20_00018 0.46 -1.5 19,254 + MPMX20_00018 0.56 +1.1 19,290 - MPMX20_00018 0.61 +2.0 19,302 + MPMX20_00018 0.63 +0.4 19,312 + MPMX20_00018 0.64 -1.9 19,333 + MPMX20_00018 0.67 -1.0 19,337 + MPMX20_00018 0.67 -0.2 19,419 - MPMX20_00018 0.78 +1.2 19,493 + MPMX20_00018 0.88 +1.3 19,547 + -2.3 19,599 + +0.4 19,599 + -1.3 19,599 + +1.0 19,599 + -1.5 19,599 + +0.2 19,599 + +2.3 19,599 + +0.5 19,599 + -1.7 19,599 + -2.5 19,599 + +1.5 19,607 - +0.5 19,607 - -2.1 19,607 - +2.7 19,607 - +0.5 19,607 - -1.9 19,607 - +0.1 19,616 - +0.8 19,658 - -1.6 19,728 - +1.2 19,733 + +0.3 19,738 + +0.1 19,746 - +0.4 19,766 + -0.5 19,774 - -0.9 19,782 - +1.3 19,790 - -0.7 19,811 + -0.7 19,847 - -1.1 19,852 - -1.9 19,889 + -1.9 19,897 - -3.2 19,924 + -1.0 19,924 + -1.1 19,945 - +0.3 19,960 + +0.4 19,967 + MPMX20_00019 0.10 +0.9 19,969 + MPMX20_00019 0.10 -2.9 20,074 + MPMX20_00019 0.17 +1.3 20,074 - MPMX20_00019 0.17 +1.3 20,076 + MPMX20_00019 0.17 -1.5 20,118 + MPMX20_00019 0.19 -2.7 20,260 + MPMX20_00019 0.28 -0.0 20,260 + MPMX20_00019 0.28 -2.4 20,283 + MPMX20_00019 0.30 +0.4 20,454 + MPMX20_00019 0.40 -0.2 20,455 + MPMX20_00019 0.40 +0.3 20,463 - MPMX20_00019 0.41 -0.9 20,463 - MPMX20_00019 0.41 -3.1 20,523 - MPMX20_00019 0.44 -0.3 20,547 - MPMX20_00019 0.46 -2.1
Or see this region's nucleotide sequence