Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04115 and MPMX20_04116 are separated by 135 nucleotides MPMX20_04116 and MPMX20_04117 overlap by 1 nucleotides
MPMX20_04115: MPMX20_04115 - Aerobic respiration control sensor protein ArcB, at 4,305,984 to 4,308,317
_04115
MPMX20_04116: MPMX20_04116 - Lipopolysaccharide export system permease protein LptG, at 4,308,453 to 4,309,535
_04116
MPMX20_04117: MPMX20_04117 - Lipopolysaccharide export system permease protein LptF, at 4,309,535 to 4,310,635
_04117
Position (kb)
4308
4309
4310 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4307.486 kb on + strand, within MPMX20_04115 at 4307.588 kb on + strand, within MPMX20_04115 at 4307.627 kb on + strand, within MPMX20_04115 at 4307.630 kb on + strand, within MPMX20_04115 at 4307.630 kb on + strand, within MPMX20_04115 at 4307.630 kb on + strand, within MPMX20_04115 at 4307.630 kb on + strand, within MPMX20_04115 at 4307.630 kb on + strand, within MPMX20_04115 at 4307.638 kb on - strand, within MPMX20_04115 at 4307.638 kb on - strand, within MPMX20_04115 at 4307.638 kb on - strand, within MPMX20_04115 at 4307.869 kb on + strand, within MPMX20_04115 at 4307.869 kb on + strand, within MPMX20_04115 at 4307.877 kb on - strand, within MPMX20_04115 at 4307.877 kb on - strand, within MPMX20_04115 at 4307.884 kb on + strand, within MPMX20_04115 at 4307.938 kb on + strand, within MPMX20_04115 at 4307.938 kb on + strand, within MPMX20_04115 at 4307.946 kb on - strand, within MPMX20_04115 at 4307.983 kb on + strand, within MPMX20_04115 at 4308.050 kb on + strand, within MPMX20_04115 at 4308.090 kb on - strand at 4308.148 kb on - strand at 4308.169 kb on + strand at 4308.171 kb on - strand at 4308.171 kb on - strand at 4308.171 kb on - strand at 4308.189 kb on + strand at 4308.231 kb on - strand at 4308.268 kb on - strand at 4308.291 kb on - strand at 4308.291 kb on - strand at 4308.291 kb on - strand at 4308.291 kb on - strand at 4308.335 kb on - strand at 4308.378 kb on - strand at 4308.380 kb on - strand at 4308.418 kb on - strand at 4308.447 kb on + strand at 4308.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090 remove 4,307,486 + MPMX20_04115 0.64 -0.6 4,307,588 + MPMX20_04115 0.69 +2.5 4,307,627 + MPMX20_04115 0.70 +0.9 4,307,630 + MPMX20_04115 0.71 +0.4 4,307,630 + MPMX20_04115 0.71 -0.3 4,307,630 + MPMX20_04115 0.71 +1.2 4,307,630 + MPMX20_04115 0.71 +0.5 4,307,630 + MPMX20_04115 0.71 +1.0 4,307,638 - MPMX20_04115 0.71 +1.0 4,307,638 - MPMX20_04115 0.71 +0.2 4,307,638 - MPMX20_04115 0.71 +1.5 4,307,869 + MPMX20_04115 0.81 +0.1 4,307,869 + MPMX20_04115 0.81 +1.0 4,307,877 - MPMX20_04115 0.81 +2.0 4,307,877 - MPMX20_04115 0.81 +2.7 4,307,884 + MPMX20_04115 0.81 +1.0 4,307,938 + MPMX20_04115 0.84 +3.9 4,307,938 + MPMX20_04115 0.84 -1.5 4,307,946 - MPMX20_04115 0.84 +2.5 4,307,983 + MPMX20_04115 0.86 +0.2 4,308,050 + MPMX20_04115 0.89 +1.0 4,308,090 - +0.9 4,308,148 - -0.6 4,308,169 + +0.5 4,308,171 - -0.9 4,308,171 - -0.8 4,308,171 - +3.0 4,308,189 + +0.8 4,308,231 - -2.0 4,308,268 - +2.5 4,308,291 - +1.3 4,308,291 - +0.3 4,308,291 - +3.1 4,308,291 - +0.2 4,308,335 - -0.0 4,308,378 - -0.6 4,308,380 - -0.5 4,308,418 - -1.5 4,308,447 + +1.5 4,308,481 - -3.0
Or see this region's nucleotide sequence