Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03441

Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03440 and MPMX20_03441 are separated by 185 nucleotidesMPMX20_03441 and MPMX20_03442 overlap by 4 nucleotidesMPMX20_03442 and MPMX20_03443 overlap by 1 nucleotides MPMX20_03440: MPMX20_03440 - Elongation factor 4, at 3,627,041 to 3,628,840 _03440 MPMX20_03441: MPMX20_03441 - Protein RseC, at 3,629,026 to 3,629,502 _03441 MPMX20_03442: MPMX20_03442 - Sigma-E factor regulatory protein RseB, at 3,629,499 to 3,630,452 _03442 MPMX20_03443: MPMX20_03443 - Anti-sigma-E factor RseA, at 3,630,452 to 3,631,102 _03443 Position (kb) 3629 3630Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3628.494 kb on - strand, within MPMX20_03440at 3628.496 kb on - strand, within MPMX20_03440at 3628.599 kb on - strand, within MPMX20_03440at 3628.608 kb on - strand, within MPMX20_03440at 3628.882 kb on + strandat 3628.882 kb on + strandat 3628.890 kb on - strandat 3628.890 kb on - strandat 3628.890 kb on - strandat 3628.890 kb on - strandat 3628.890 kb on - strandat 3628.953 kb on - strandat 3629.026 kb on + strandat 3629.034 kb on + strandat 3629.062 kb on - strandat 3629.070 kb on + strandat 3629.076 kb on + strand, within MPMX20_03441at 3629.100 kb on + strand, within MPMX20_03441at 3629.121 kb on + strand, within MPMX20_03441at 3629.121 kb on + strand, within MPMX20_03441at 3629.129 kb on - strand, within MPMX20_03441at 3629.135 kb on + strand, within MPMX20_03441at 3629.143 kb on - strand, within MPMX20_03441at 3629.154 kb on + strand, within MPMX20_03441at 3629.162 kb on - strand, within MPMX20_03441at 3629.198 kb on + strand, within MPMX20_03441at 3629.206 kb on - strand, within MPMX20_03441at 3629.236 kb on - strand, within MPMX20_03441at 3629.255 kb on + strand, within MPMX20_03441at 3629.281 kb on - strand, within MPMX20_03441at 3629.383 kb on - strand, within MPMX20_03441at 3629.439 kb on + strand, within MPMX20_03441at 3629.516 kb on + strandat 3629.530 kb on + strandat 3629.571 kb on + strandat 3629.577 kb on - strandat 3629.594 kb on + strandat 3629.594 kb on + strandat 3629.641 kb on - strand, within MPMX20_03442at 3629.641 kb on - strand, within MPMX20_03442at 3629.753 kb on - strand, within MPMX20_03442at 3629.818 kb on + strand, within MPMX20_03442at 3629.863 kb on + strand, within MPMX20_03442at 3629.899 kb on + strand, within MPMX20_03442at 3629.907 kb on - strand, within MPMX20_03442at 3629.909 kb on + strand, within MPMX20_03442at 3629.917 kb on - strand, within MPMX20_03442at 3630.025 kb on + strand, within MPMX20_03442at 3630.114 kb on + strand, within MPMX20_03442at 3630.166 kb on - strand, within MPMX20_03442at 3630.208 kb on - strand, within MPMX20_03442at 3630.393 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090
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3,628,494 - MPMX20_03440 0.81 +1.0
3,628,496 - MPMX20_03440 0.81 +0.3
3,628,599 - MPMX20_03440 0.87 +0.6
3,628,608 - MPMX20_03440 0.87 -0.2
3,628,882 + +0.0
3,628,882 + +0.6
3,628,890 - +0.7
3,628,890 - +0.5
3,628,890 - -3.5
3,628,890 - +0.1
3,628,890 - -2.4
3,628,953 - -1.7
3,629,026 + +1.6
3,629,034 + -0.8
3,629,062 - -0.9
3,629,070 + -0.2
3,629,076 + MPMX20_03441 0.10 +0.7
3,629,100 + MPMX20_03441 0.16 -1.0
3,629,121 + MPMX20_03441 0.20 +2.9
3,629,121 + MPMX20_03441 0.20 -0.1
3,629,129 - MPMX20_03441 0.22 +1.0
3,629,135 + MPMX20_03441 0.23 +0.1
3,629,143 - MPMX20_03441 0.25 +2.8
3,629,154 + MPMX20_03441 0.27 -1.6
3,629,162 - MPMX20_03441 0.29 -0.2
3,629,198 + MPMX20_03441 0.36 +0.9
3,629,206 - MPMX20_03441 0.38 +0.9
3,629,236 - MPMX20_03441 0.44 +1.1
3,629,255 + MPMX20_03441 0.48 +1.6
3,629,281 - MPMX20_03441 0.53 -1.4
3,629,383 - MPMX20_03441 0.75 -1.9
3,629,439 + MPMX20_03441 0.87 -2.1
3,629,516 + -1.6
3,629,530 + -0.9
3,629,571 + -1.9
3,629,577 - -0.8
3,629,594 + -0.4
3,629,594 + +1.0
3,629,641 - MPMX20_03442 0.15 -0.4
3,629,641 - MPMX20_03442 0.15 -2.1
3,629,753 - MPMX20_03442 0.27 +2.3
3,629,818 + MPMX20_03442 0.33 -0.1
3,629,863 + MPMX20_03442 0.38 +1.8
3,629,899 + MPMX20_03442 0.42 +0.6
3,629,907 - MPMX20_03442 0.43 +0.5
3,629,909 + MPMX20_03442 0.43 +1.5
3,629,917 - MPMX20_03442 0.44 +1.9
3,630,025 + MPMX20_03442 0.55 +1.6
3,630,114 + MPMX20_03442 0.64 -0.9
3,630,166 - MPMX20_03442 0.70 +3.2
3,630,208 - MPMX20_03442 0.74 +0.3
3,630,393 - -1.5

Or see this region's nucleotide sequence