Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03440 and MPMX20_03441 are separated by 185 nucleotides MPMX20_03441 and MPMX20_03442 overlap by 4 nucleotides MPMX20_03442 and MPMX20_03443 overlap by 1 nucleotides
MPMX20_03440: MPMX20_03440 - Elongation factor 4, at 3,627,041 to 3,628,840
_03440
MPMX20_03441: MPMX20_03441 - Protein RseC, at 3,629,026 to 3,629,502
_03441
MPMX20_03442: MPMX20_03442 - Sigma-E factor regulatory protein RseB, at 3,629,499 to 3,630,452
_03442
MPMX20_03443: MPMX20_03443 - Anti-sigma-E factor RseA, at 3,630,452 to 3,631,102
_03443
Position (kb)
3629
3630 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3628.494 kb on - strand, within MPMX20_03440 at 3628.496 kb on - strand, within MPMX20_03440 at 3628.599 kb on - strand, within MPMX20_03440 at 3628.608 kb on - strand, within MPMX20_03440 at 3628.882 kb on + strand at 3628.882 kb on + strand at 3628.890 kb on - strand at 3628.890 kb on - strand at 3628.890 kb on - strand at 3628.890 kb on - strand at 3628.890 kb on - strand at 3628.953 kb on - strand at 3629.026 kb on + strand at 3629.034 kb on + strand at 3629.062 kb on - strand at 3629.070 kb on + strand at 3629.076 kb on + strand, within MPMX20_03441 at 3629.100 kb on + strand, within MPMX20_03441 at 3629.121 kb on + strand, within MPMX20_03441 at 3629.121 kb on + strand, within MPMX20_03441 at 3629.129 kb on - strand, within MPMX20_03441 at 3629.135 kb on + strand, within MPMX20_03441 at 3629.143 kb on - strand, within MPMX20_03441 at 3629.154 kb on + strand, within MPMX20_03441 at 3629.162 kb on - strand, within MPMX20_03441 at 3629.198 kb on + strand, within MPMX20_03441 at 3629.206 kb on - strand, within MPMX20_03441 at 3629.236 kb on - strand, within MPMX20_03441 at 3629.255 kb on + strand, within MPMX20_03441 at 3629.281 kb on - strand, within MPMX20_03441 at 3629.383 kb on - strand, within MPMX20_03441 at 3629.439 kb on + strand, within MPMX20_03441 at 3629.516 kb on + strand at 3629.530 kb on + strand at 3629.571 kb on + strand at 3629.577 kb on - strand at 3629.594 kb on + strand at 3629.594 kb on + strand at 3629.641 kb on - strand, within MPMX20_03442 at 3629.641 kb on - strand, within MPMX20_03442 at 3629.753 kb on - strand, within MPMX20_03442 at 3629.818 kb on + strand, within MPMX20_03442 at 3629.863 kb on + strand, within MPMX20_03442 at 3629.899 kb on + strand, within MPMX20_03442 at 3629.907 kb on - strand, within MPMX20_03442 at 3629.909 kb on + strand, within MPMX20_03442 at 3629.917 kb on - strand, within MPMX20_03442 at 3630.025 kb on + strand, within MPMX20_03442 at 3630.114 kb on + strand, within MPMX20_03442 at 3630.166 kb on - strand, within MPMX20_03442 at 3630.208 kb on - strand, within MPMX20_03442 at 3630.393 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090 remove 3,628,494 - MPMX20_03440 0.81 +1.0 3,628,496 - MPMX20_03440 0.81 +0.3 3,628,599 - MPMX20_03440 0.87 +0.6 3,628,608 - MPMX20_03440 0.87 -0.2 3,628,882 + +0.0 3,628,882 + +0.6 3,628,890 - +0.7 3,628,890 - +0.5 3,628,890 - -3.5 3,628,890 - +0.1 3,628,890 - -2.4 3,628,953 - -1.7 3,629,026 + +1.6 3,629,034 + -0.8 3,629,062 - -0.9 3,629,070 + -0.2 3,629,076 + MPMX20_03441 0.10 +0.7 3,629,100 + MPMX20_03441 0.16 -1.0 3,629,121 + MPMX20_03441 0.20 +2.9 3,629,121 + MPMX20_03441 0.20 -0.1 3,629,129 - MPMX20_03441 0.22 +1.0 3,629,135 + MPMX20_03441 0.23 +0.1 3,629,143 - MPMX20_03441 0.25 +2.8 3,629,154 + MPMX20_03441 0.27 -1.6 3,629,162 - MPMX20_03441 0.29 -0.2 3,629,198 + MPMX20_03441 0.36 +0.9 3,629,206 - MPMX20_03441 0.38 +0.9 3,629,236 - MPMX20_03441 0.44 +1.1 3,629,255 + MPMX20_03441 0.48 +1.6 3,629,281 - MPMX20_03441 0.53 -1.4 3,629,383 - MPMX20_03441 0.75 -1.9 3,629,439 + MPMX20_03441 0.87 -2.1 3,629,516 + -1.6 3,629,530 + -0.9 3,629,571 + -1.9 3,629,577 - -0.8 3,629,594 + -0.4 3,629,594 + +1.0 3,629,641 - MPMX20_03442 0.15 -0.4 3,629,641 - MPMX20_03442 0.15 -2.1 3,629,753 - MPMX20_03442 0.27 +2.3 3,629,818 + MPMX20_03442 0.33 -0.1 3,629,863 + MPMX20_03442 0.38 +1.8 3,629,899 + MPMX20_03442 0.42 +0.6 3,629,907 - MPMX20_03442 0.43 +0.5 3,629,909 + MPMX20_03442 0.43 +1.5 3,629,917 - MPMX20_03442 0.44 +1.9 3,630,025 + MPMX20_03442 0.55 +1.6 3,630,114 + MPMX20_03442 0.64 -0.9 3,630,166 - MPMX20_03442 0.70 +3.2 3,630,208 - MPMX20_03442 0.74 +0.3 3,630,393 - -1.5
Or see this region's nucleotide sequence