Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03374

Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03373 and MPMX20_03374 are separated by 290 nucleotidesMPMX20_03374 and MPMX20_03375 are separated by 11 nucleotides MPMX20_03373: MPMX20_03373 - Myo-inositol 2-dehydrogenase, at 3,550,498 to 3,551,484 _03373 MPMX20_03374: MPMX20_03374 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, at 3,551,775 to 3,553,700 _03374 MPMX20_03375: MPMX20_03375 - Putative 3-oxopropanoate dehydrogenase, at 3,553,712 to 3,555,217 _03375 Position (kb) 3551 3552 3553 3554Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 3550.914 kb on - strand, within MPMX20_03373at 3551.039 kb on - strand, within MPMX20_03373at 3551.039 kb on - strand, within MPMX20_03373at 3551.086 kb on - strand, within MPMX20_03373at 3551.200 kb on - strand, within MPMX20_03373at 3551.201 kb on - strand, within MPMX20_03373at 3551.269 kb on + strand, within MPMX20_03373at 3551.287 kb on - strand, within MPMX20_03373at 3551.322 kb on + strand, within MPMX20_03373at 3551.322 kb on + strand, within MPMX20_03373at 3551.323 kb on + strand, within MPMX20_03373at 3551.330 kb on - strand, within MPMX20_03373at 3551.331 kb on - strand, within MPMX20_03373at 3551.332 kb on + strand, within MPMX20_03373at 3551.340 kb on - strand, within MPMX20_03373at 3551.391 kb on + strandat 3551.399 kb on - strandat 3551.399 kb on - strandat 3551.408 kb on + strandat 3551.408 kb on + strandat 3551.416 kb on - strandat 3551.459 kb on + strandat 3551.501 kb on + strandat 3551.698 kb on + strandat 3551.925 kb on + strandat 3551.939 kb on - strandat 3552.034 kb on + strand, within MPMX20_03374at 3552.118 kb on + strand, within MPMX20_03374at 3552.173 kb on + strand, within MPMX20_03374at 3552.221 kb on + strand, within MPMX20_03374at 3552.252 kb on - strand, within MPMX20_03374at 3552.297 kb on + strand, within MPMX20_03374at 3552.305 kb on - strand, within MPMX20_03374at 3552.318 kb on + strand, within MPMX20_03374at 3552.320 kb on - strand, within MPMX20_03374at 3552.326 kb on - strand, within MPMX20_03374at 3552.368 kb on + strand, within MPMX20_03374at 3552.381 kb on - strand, within MPMX20_03374at 3552.468 kb on - strand, within MPMX20_03374at 3552.539 kb on - strand, within MPMX20_03374at 3552.610 kb on - strand, within MPMX20_03374at 3552.877 kb on - strand, within MPMX20_03374at 3552.886 kb on - strand, within MPMX20_03374at 3552.886 kb on - strand, within MPMX20_03374at 3553.002 kb on - strand, within MPMX20_03374at 3553.048 kb on + strand, within MPMX20_03374at 3553.070 kb on + strand, within MPMX20_03374at 3553.099 kb on - strand, within MPMX20_03374at 3553.100 kb on + strand, within MPMX20_03374at 3553.101 kb on + strand, within MPMX20_03374at 3553.113 kb on + strand, within MPMX20_03374at 3553.220 kb on + strand, within MPMX20_03374at 3553.291 kb on + strand, within MPMX20_03374at 3553.338 kb on + strand, within MPMX20_03374at 3553.357 kb on - strand, within MPMX20_03374at 3553.359 kb on - strand, within MPMX20_03374at 3553.432 kb on + strand, within MPMX20_03374at 3553.467 kb on - strand, within MPMX20_03374at 3553.487 kb on + strand, within MPMX20_03374at 3553.523 kb on - strandat 3553.523 kb on - strandat 3553.523 kb on - strandat 3553.543 kb on - strandat 3553.646 kb on - strandat 3553.676 kb on - strandat 3553.705 kb on - strandat 3553.705 kb on - strandat 3553.730 kb on + strandat 3553.774 kb on + strandat 3554.005 kb on + strand, within MPMX20_03375at 3554.018 kb on + strand, within MPMX20_03375at 3554.018 kb on + strand, within MPMX20_03375at 3554.026 kb on - strand, within MPMX20_03375at 3554.026 kb on - strand, within MPMX20_03375at 3554.026 kb on - strand, within MPMX20_03375at 3554.088 kb on + strand, within MPMX20_03375at 3554.115 kb on - strand, within MPMX20_03375at 3554.115 kb on - strand, within MPMX20_03375at 3554.115 kb on - strand, within MPMX20_03375at 3554.161 kb on - strand, within MPMX20_03375at 3554.164 kb on - strand, within MPMX20_03375at 3554.202 kb on + strand, within MPMX20_03375at 3554.207 kb on + strand, within MPMX20_03375at 3554.215 kb on - strand, within MPMX20_03375at 3554.217 kb on + strand, within MPMX20_03375at 3554.217 kb on + strand, within MPMX20_03375at 3554.225 kb on - strand, within MPMX20_03375at 3554.225 kb on - strand, within MPMX20_03375at 3554.235 kb on - strand, within MPMX20_03375at 3554.270 kb on + strand, within MPMX20_03375at 3554.270 kb on + strand, within MPMX20_03375at 3554.278 kb on - strand, within MPMX20_03375at 3554.329 kb on + strand, within MPMX20_03375at 3554.337 kb on + strand, within MPMX20_03375at 3554.345 kb on - strand, within MPMX20_03375at 3554.393 kb on + strand, within MPMX20_03375at 3554.500 kb on + strand, within MPMX20_03375at 3554.536 kb on + strand, within MPMX20_03375at 3554.544 kb on - strand, within MPMX20_03375at 3554.544 kb on - strand, within MPMX20_03375at 3554.572 kb on + strand, within MPMX20_03375at 3554.611 kb on + strand, within MPMX20_03375at 3554.646 kb on - strand, within MPMX20_03375

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090
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3,550,914 - MPMX20_03373 0.42 -2.0
3,551,039 - MPMX20_03373 0.55 -0.7
3,551,039 - MPMX20_03373 0.55 -1.0
3,551,086 - MPMX20_03373 0.60 +0.3
3,551,200 - MPMX20_03373 0.71 -1.1
3,551,201 - MPMX20_03373 0.71 -0.4
3,551,269 + MPMX20_03373 0.78 +0.6
3,551,287 - MPMX20_03373 0.80 -1.0
3,551,322 + MPMX20_03373 0.83 +1.4
3,551,322 + MPMX20_03373 0.83 -2.2
3,551,323 + MPMX20_03373 0.84 -0.0
3,551,330 - MPMX20_03373 0.84 -0.3
3,551,331 - MPMX20_03373 0.84 -2.6
3,551,332 + MPMX20_03373 0.84 -2.2
3,551,340 - MPMX20_03373 0.85 -1.2
3,551,391 + -1.6
3,551,399 - +0.5
3,551,399 - -0.8
3,551,408 + +0.2
3,551,408 + -0.6
3,551,416 - -1.8
3,551,459 + -2.3
3,551,501 + -0.2
3,551,698 + -2.3
3,551,925 + -1.9
3,551,939 - -0.8
3,552,034 + MPMX20_03374 0.13 +0.7
3,552,118 + MPMX20_03374 0.18 +2.3
3,552,173 + MPMX20_03374 0.21 +0.3
3,552,221 + MPMX20_03374 0.23 -3.3
3,552,252 - MPMX20_03374 0.25 +0.5
3,552,297 + MPMX20_03374 0.27 -1.8
3,552,305 - MPMX20_03374 0.28 +0.8
3,552,318 + MPMX20_03374 0.28 +0.9
3,552,320 - MPMX20_03374 0.28 +1.6
3,552,326 - MPMX20_03374 0.29 -0.2
3,552,368 + MPMX20_03374 0.31 -0.9
3,552,381 - MPMX20_03374 0.31 -0.8
3,552,468 - MPMX20_03374 0.36 -1.7
3,552,539 - MPMX20_03374 0.40 -1.2
3,552,610 - MPMX20_03374 0.43 +0.0
3,552,877 - MPMX20_03374 0.57 +2.9
3,552,886 - MPMX20_03374 0.58 -0.2
3,552,886 - MPMX20_03374 0.58 +0.1
3,553,002 - MPMX20_03374 0.64 +1.8
3,553,048 + MPMX20_03374 0.66 -0.1
3,553,070 + MPMX20_03374 0.67 +0.2
3,553,099 - MPMX20_03374 0.69 +0.1
3,553,100 + MPMX20_03374 0.69 -0.6
3,553,101 + MPMX20_03374 0.69 -2.3
3,553,113 + MPMX20_03374 0.69 -3.5
3,553,220 + MPMX20_03374 0.75 -0.1
3,553,291 + MPMX20_03374 0.79 -1.1
3,553,338 + MPMX20_03374 0.81 -0.6
3,553,357 - MPMX20_03374 0.82 -1.1
3,553,359 - MPMX20_03374 0.82 -2.8
3,553,432 + MPMX20_03374 0.86 +0.6
3,553,467 - MPMX20_03374 0.88 -2.3
3,553,487 + MPMX20_03374 0.89 +8.6
3,553,523 - -1.3
3,553,523 - +0.0
3,553,523 - +2.6
3,553,543 - +1.5
3,553,646 - +1.0
3,553,676 - -1.5
3,553,705 - -2.0
3,553,705 - +0.5
3,553,730 + -1.0
3,553,774 + +0.3
3,554,005 + MPMX20_03375 0.19 -2.0
3,554,018 + MPMX20_03375 0.20 +2.0
3,554,018 + MPMX20_03375 0.20 -2.0
3,554,026 - MPMX20_03375 0.21 -1.2
3,554,026 - MPMX20_03375 0.21 -0.4
3,554,026 - MPMX20_03375 0.21 -2.5
3,554,088 + MPMX20_03375 0.25 +0.4
3,554,115 - MPMX20_03375 0.27 -1.5
3,554,115 - MPMX20_03375 0.27 -0.5
3,554,115 - MPMX20_03375 0.27 -2.8
3,554,161 - MPMX20_03375 0.30 -0.5
3,554,164 - MPMX20_03375 0.30 -3.0
3,554,202 + MPMX20_03375 0.33 -1.8
3,554,207 + MPMX20_03375 0.33 -1.1
3,554,215 - MPMX20_03375 0.33 -1.9
3,554,217 + MPMX20_03375 0.34 +0.5
3,554,217 + MPMX20_03375 0.34 -0.8
3,554,225 - MPMX20_03375 0.34 -1.1
3,554,225 - MPMX20_03375 0.34 -0.4
3,554,235 - MPMX20_03375 0.35 -0.4
3,554,270 + MPMX20_03375 0.37 +3.8
3,554,270 + MPMX20_03375 0.37 -0.1
3,554,278 - MPMX20_03375 0.38 -2.2
3,554,329 + MPMX20_03375 0.41 -0.1
3,554,337 + MPMX20_03375 0.42 -3.2
3,554,345 - MPMX20_03375 0.42 +0.2
3,554,393 + MPMX20_03375 0.45 +0.6
3,554,500 + MPMX20_03375 0.52 -3.2
3,554,536 + MPMX20_03375 0.55 +0.4
3,554,544 - MPMX20_03375 0.55 -2.5
3,554,544 - MPMX20_03375 0.55 -1.8
3,554,572 + MPMX20_03375 0.57 -1.1
3,554,611 + MPMX20_03375 0.60 -1.0
3,554,646 - MPMX20_03375 0.62 +0.0

Or see this region's nucleotide sequence