Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03103

Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03101 and MPMX20_03102 are separated by 111 nucleotidesMPMX20_03102 and MPMX20_03103 are separated by 66 nucleotidesMPMX20_03103 and MPMX20_03104 are separated by 167 nucleotidesMPMX20_03104 and MPMX20_03105 are separated by 157 nucleotides MPMX20_03101: MPMX20_03101 - Quinone-dependent D-lactate dehydrogenase, at 3,254,786 to 3,256,534 _03101 MPMX20_03102: MPMX20_03102 - Phosphinothricin N-acetyltransferase, at 3,256,646 to 3,257,200 _03102 MPMX20_03103: MPMX20_03103 - D-alanyl-D-alanine endopeptidase, at 3,257,267 to 3,258,190 _03103 MPMX20_03104: MPMX20_03104 - Inner membrane protein YohC, at 3,258,358 to 3,258,945 _03104 MPMX20_03105: MPMX20_03105 - Inner membrane protein YohD, at 3,259,103 to 3,259,675 _03105 Position (kb) 3257 3258 3259Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3256.276 kb on + strand, within MPMX20_03101at 3256.276 kb on + strand, within MPMX20_03101at 3256.276 kb on + strand, within MPMX20_03101at 3256.284 kb on - strand, within MPMX20_03101at 3256.284 kb on - strand, within MPMX20_03101at 3256.311 kb on + strand, within MPMX20_03101at 3256.329 kb on - strand, within MPMX20_03101at 3256.369 kb on + strandat 3256.395 kb on - strandat 3256.404 kb on + strandat 3256.443 kb on + strandat 3256.443 kb on + strandat 3256.450 kb on + strandat 3256.494 kb on + strandat 3256.505 kb on + strandat 3256.513 kb on - strandat 3256.578 kb on - strandat 3256.584 kb on + strandat 3256.584 kb on + strandat 3256.587 kb on - strandat 3256.625 kb on + strandat 3256.625 kb on + strandat 3256.625 kb on + strandat 3256.689 kb on + strandat 3256.862 kb on + strand, within MPMX20_03102at 3256.876 kb on - strand, within MPMX20_03102at 3256.876 kb on - strand, within MPMX20_03102at 3256.876 kb on - strand, within MPMX20_03102at 3256.885 kb on + strand, within MPMX20_03102at 3256.909 kb on + strand, within MPMX20_03102at 3256.917 kb on + strand, within MPMX20_03102at 3256.917 kb on - strand, within MPMX20_03102at 3256.917 kb on - strand, within MPMX20_03102at 3257.072 kb on - strand, within MPMX20_03102at 3257.115 kb on + strand, within MPMX20_03102at 3257.170 kb on + strandat 3257.203 kb on - strandat 3257.203 kb on - strandat 3257.219 kb on - strandat 3257.224 kb on - strandat 3257.252 kb on + strandat 3257.283 kb on + strandat 3257.283 kb on + strandat 3257.291 kb on - strandat 3257.323 kb on - strandat 3257.336 kb on + strandat 3257.350 kb on - strandat 3257.383 kb on - strand, within MPMX20_03103at 3257.419 kb on + strand, within MPMX20_03103at 3257.423 kb on - strand, within MPMX20_03103at 3257.458 kb on + strand, within MPMX20_03103at 3257.458 kb on + strand, within MPMX20_03103at 3257.466 kb on - strand, within MPMX20_03103at 3257.468 kb on + strand, within MPMX20_03103at 3257.476 kb on - strand, within MPMX20_03103at 3257.528 kb on - strand, within MPMX20_03103at 3257.537 kb on - strand, within MPMX20_03103at 3257.541 kb on + strand, within MPMX20_03103at 3257.598 kb on + strand, within MPMX20_03103at 3257.601 kb on + strand, within MPMX20_03103at 3257.601 kb on + strand, within MPMX20_03103at 3257.601 kb on + strand, within MPMX20_03103at 3257.601 kb on + strand, within MPMX20_03103at 3257.601 kb on + strand, within MPMX20_03103at 3257.601 kb on + strand, within MPMX20_03103at 3257.601 kb on + strand, within MPMX20_03103at 3257.601 kb on + strand, within MPMX20_03103at 3257.609 kb on - strand, within MPMX20_03103at 3257.609 kb on - strand, within MPMX20_03103at 3257.609 kb on - strand, within MPMX20_03103at 3257.609 kb on - strand, within MPMX20_03103at 3257.621 kb on + strand, within MPMX20_03103at 3257.730 kb on + strand, within MPMX20_03103at 3257.775 kb on + strand, within MPMX20_03103at 3257.786 kb on - strand, within MPMX20_03103at 3257.947 kb on - strand, within MPMX20_03103at 3258.031 kb on + strand, within MPMX20_03103at 3258.144 kb on + strandat 3258.163 kb on - strandat 3258.164 kb on + strandat 3258.199 kb on - strandat 3258.219 kb on + strandat 3258.307 kb on + strandat 3258.356 kb on + strandat 3258.356 kb on + strandat 3258.356 kb on + strandat 3258.364 kb on - strandat 3258.364 kb on - strandat 3258.364 kb on - strandat 3258.364 kb on - strandat 3258.426 kb on + strand, within MPMX20_03104at 3258.462 kb on - strand, within MPMX20_03104at 3258.505 kb on - strand, within MPMX20_03104at 3258.539 kb on - strand, within MPMX20_03104at 3258.584 kb on - strand, within MPMX20_03104at 3258.595 kb on - strand, within MPMX20_03104at 3258.623 kb on + strand, within MPMX20_03104at 3258.632 kb on - strand, within MPMX20_03104at 3258.683 kb on + strand, within MPMX20_03104at 3258.685 kb on + strand, within MPMX20_03104at 3258.685 kb on + strand, within MPMX20_03104at 3258.693 kb on - strand, within MPMX20_03104at 3258.693 kb on - strand, within MPMX20_03104at 3258.735 kb on + strand, within MPMX20_03104at 3258.767 kb on - strand, within MPMX20_03104at 3258.828 kb on - strand, within MPMX20_03104at 3258.828 kb on - strand, within MPMX20_03104at 3258.839 kb on - strand, within MPMX20_03104at 3258.919 kb on + strandat 3258.957 kb on - strandat 3259.100 kb on - strandat 3259.116 kb on + strandat 3259.116 kb on + strandat 3259.124 kb on - strandat 3259.141 kb on - strandat 3259.148 kb on + strandat 3259.150 kb on - strandat 3259.156 kb on - strandat 3259.176 kb on + strand, within MPMX20_03105at 3259.176 kb on + strand, within MPMX20_03105at 3259.177 kb on - strand, within MPMX20_03105at 3259.177 kb on - strand, within MPMX20_03105at 3259.184 kb on - strand, within MPMX20_03105at 3259.184 kb on - strand, within MPMX20_03105at 3259.186 kb on + strand, within MPMX20_03105at 3259.186 kb on + strand, within MPMX20_03105

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090
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3,256,276 + MPMX20_03101 0.85 -0.2
3,256,276 + MPMX20_03101 0.85 -0.9
3,256,276 + MPMX20_03101 0.85 +0.8
3,256,284 - MPMX20_03101 0.86 -0.3
3,256,284 - MPMX20_03101 0.86 +0.2
3,256,311 + MPMX20_03101 0.87 +0.6
3,256,329 - MPMX20_03101 0.88 -1.7
3,256,369 + -0.3
3,256,395 - -2.1
3,256,404 + +0.7
3,256,443 + +2.0
3,256,443 + -1.3
3,256,450 + +1.8
3,256,494 + +1.1
3,256,505 + +0.3
3,256,513 - -1.7
3,256,578 - +0.1
3,256,584 + -1.0
3,256,584 + -0.7
3,256,587 - +1.6
3,256,625 + +0.4
3,256,625 + +1.3
3,256,625 + +1.0
3,256,689 + -1.4
3,256,862 + MPMX20_03102 0.39 -1.4
3,256,876 - MPMX20_03102 0.41 -1.7
3,256,876 - MPMX20_03102 0.41 -0.7
3,256,876 - MPMX20_03102 0.41 -2.9
3,256,885 + MPMX20_03102 0.43 -1.6
3,256,909 + MPMX20_03102 0.47 -0.6
3,256,917 + MPMX20_03102 0.49 -0.9
3,256,917 - MPMX20_03102 0.49 -2.9
3,256,917 - MPMX20_03102 0.49 +0.9
3,257,072 - MPMX20_03102 0.77 -0.8
3,257,115 + MPMX20_03102 0.85 -1.1
3,257,170 + +1.0
3,257,203 - -1.3
3,257,203 - -0.7
3,257,219 - -1.3
3,257,224 - +1.2
3,257,252 + +1.1
3,257,283 + -0.5
3,257,283 + +1.2
3,257,291 - +0.1
3,257,323 - -2.9
3,257,336 + -0.1
3,257,350 - -1.3
3,257,383 - MPMX20_03103 0.13 -2.0
3,257,419 + MPMX20_03103 0.16 +0.4
3,257,423 - MPMX20_03103 0.17 +1.5
3,257,458 + MPMX20_03103 0.21 -1.3
3,257,458 + MPMX20_03103 0.21 -0.7
3,257,466 - MPMX20_03103 0.22 -1.1
3,257,468 + MPMX20_03103 0.22 +1.1
3,257,476 - MPMX20_03103 0.23 +0.8
3,257,528 - MPMX20_03103 0.28 -0.2
3,257,537 - MPMX20_03103 0.29 -1.0
3,257,541 + MPMX20_03103 0.30 -1.2
3,257,598 + MPMX20_03103 0.36 -0.8
3,257,601 + MPMX20_03103 0.36 +0.7
3,257,601 + MPMX20_03103 0.36 -1.4
3,257,601 + MPMX20_03103 0.36 +0.4
3,257,601 + MPMX20_03103 0.36 -0.8
3,257,601 + MPMX20_03103 0.36 -2.7
3,257,601 + MPMX20_03103 0.36 -1.4
3,257,601 + MPMX20_03103 0.36 +1.1
3,257,601 + MPMX20_03103 0.36 -2.3
3,257,609 - MPMX20_03103 0.37 -0.4
3,257,609 - MPMX20_03103 0.37 -1.1
3,257,609 - MPMX20_03103 0.37 +2.6
3,257,609 - MPMX20_03103 0.37 -0.2
3,257,621 + MPMX20_03103 0.38 -1.4
3,257,730 + MPMX20_03103 0.50 -1.2
3,257,775 + MPMX20_03103 0.55 -1.1
3,257,786 - MPMX20_03103 0.56 +0.2
3,257,947 - MPMX20_03103 0.74 +1.1
3,258,031 + MPMX20_03103 0.83 -1.5
3,258,144 + -0.4
3,258,163 - +3.2
3,258,164 + -0.5
3,258,199 - -0.4
3,258,219 + -2.3
3,258,307 + -0.3
3,258,356 + +1.1
3,258,356 + +2.7
3,258,356 + +3.7
3,258,364 - +0.5
3,258,364 - -0.1
3,258,364 - +0.3
3,258,364 - +0.8
3,258,426 + MPMX20_03104 0.12 +0.5
3,258,462 - MPMX20_03104 0.18 +0.1
3,258,505 - MPMX20_03104 0.25 -0.2
3,258,539 - MPMX20_03104 0.31 +1.7
3,258,584 - MPMX20_03104 0.38 -0.0
3,258,595 - MPMX20_03104 0.40 +3.4
3,258,623 + MPMX20_03104 0.45 -1.5
3,258,632 - MPMX20_03104 0.47 +0.1
3,258,683 + MPMX20_03104 0.55 +1.4
3,258,685 + MPMX20_03104 0.56 +2.2
3,258,685 + MPMX20_03104 0.56 -1.3
3,258,693 - MPMX20_03104 0.57 -1.3
3,258,693 - MPMX20_03104 0.57 +0.1
3,258,735 + MPMX20_03104 0.64 -0.7
3,258,767 - MPMX20_03104 0.70 +1.4
3,258,828 - MPMX20_03104 0.80 -1.8
3,258,828 - MPMX20_03104 0.80 +0.5
3,258,839 - MPMX20_03104 0.82 -1.1
3,258,919 + -2.1
3,258,957 - -1.4
3,259,100 - -0.6
3,259,116 + -2.4
3,259,116 + -0.0
3,259,124 - -1.0
3,259,141 - -0.2
3,259,148 + -1.7
3,259,150 - +0.8
3,259,156 - -1.0
3,259,176 + MPMX20_03105 0.13 +0.7
3,259,176 + MPMX20_03105 0.13 -1.6
3,259,177 - MPMX20_03105 0.13 -0.1
3,259,177 - MPMX20_03105 0.13 -0.1
3,259,184 - MPMX20_03105 0.14 -1.7
3,259,184 - MPMX20_03105 0.14 -2.2
3,259,186 + MPMX20_03105 0.14 -1.0
3,259,186 + MPMX20_03105 0.14 -0.1

Or see this region's nucleotide sequence