Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02354

Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02353 and MPMX20_02354 are separated by 266 nucleotidesMPMX20_02354 and MPMX20_02355 are separated by 12 nucleotidesMPMX20_02355 and MPMX20_02356 are separated by 15 nucleotides MPMX20_02353: MPMX20_02353 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 2,480,779 to 2,482,260 _02353 MPMX20_02354: MPMX20_02354 - hypothetical protein, at 2,482,527 to 2,483,381 _02354 MPMX20_02355: MPMX20_02355 - D-alanyl-D-alanine dipeptidase, at 2,483,394 to 2,483,969 _02355 MPMX20_02356: MPMX20_02356 - putative D,D-dipeptide-binding periplasmic protein DdpA, at 2,483,985 to 2,485,517 _02356 Position (kb) 2482 2483 2484Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2481.537 kb on - strand, within MPMX20_02353at 2481.545 kb on - strand, within MPMX20_02353at 2481.601 kb on - strand, within MPMX20_02353at 2481.601 kb on - strand, within MPMX20_02353at 2481.638 kb on + strand, within MPMX20_02353at 2481.646 kb on - strand, within MPMX20_02353at 2481.740 kb on + strand, within MPMX20_02353at 2481.831 kb on + strand, within MPMX20_02353at 2481.839 kb on + strand, within MPMX20_02353at 2481.847 kb on - strand, within MPMX20_02353at 2481.847 kb on - strand, within MPMX20_02353at 2481.852 kb on + strand, within MPMX20_02353at 2481.860 kb on - strand, within MPMX20_02353at 2481.871 kb on - strand, within MPMX20_02353at 2481.899 kb on + strand, within MPMX20_02353at 2481.906 kb on + strand, within MPMX20_02353at 2481.914 kb on - strand, within MPMX20_02353at 2481.914 kb on - strand, within MPMX20_02353at 2481.944 kb on + strand, within MPMX20_02353at 2481.973 kb on + strand, within MPMX20_02353at 2481.973 kb on + strand, within MPMX20_02353at 2481.981 kb on - strand, within MPMX20_02353at 2481.981 kb on - strand, within MPMX20_02353at 2481.981 kb on - strand, within MPMX20_02353at 2482.096 kb on + strand, within MPMX20_02353at 2482.131 kb on + strandat 2482.139 kb on - strandat 2482.185 kb on + strandat 2482.190 kb on - strandat 2482.249 kb on - strandat 2482.287 kb on + strandat 2482.295 kb on - strandat 2482.295 kb on - strandat 2482.332 kb on + strandat 2482.537 kb on + strandat 2482.545 kb on + strandat 2482.553 kb on - strandat 2482.553 kb on - strandat 2482.667 kb on - strand, within MPMX20_02354at 2482.681 kb on + strand, within MPMX20_02354at 2482.763 kb on + strand, within MPMX20_02354at 2482.763 kb on + strand, within MPMX20_02354at 2482.763 kb on + strand, within MPMX20_02354at 2482.763 kb on + strand, within MPMX20_02354at 2482.771 kb on - strand, within MPMX20_02354at 2482.834 kb on + strand, within MPMX20_02354at 2482.885 kb on - strand, within MPMX20_02354at 2483.072 kb on + strand, within MPMX20_02354at 2483.072 kb on + strand, within MPMX20_02354at 2483.072 kb on + strand, within MPMX20_02354at 2483.080 kb on - strand, within MPMX20_02354at 2483.080 kb on - strand, within MPMX20_02354at 2483.080 kb on - strand, within MPMX20_02354at 2483.082 kb on + strand, within MPMX20_02354at 2483.085 kb on - strand, within MPMX20_02354at 2483.085 kb on - strand, within MPMX20_02354at 2483.090 kb on - strand, within MPMX20_02354at 2483.267 kb on - strand, within MPMX20_02354at 2483.300 kb on - strandat 2483.312 kb on - strandat 2483.376 kb on + strandat 2483.384 kb on - strandat 2483.424 kb on + strandat 2483.431 kb on - strandat 2483.469 kb on + strand, within MPMX20_02355at 2483.477 kb on - strand, within MPMX20_02355at 2483.575 kb on + strand, within MPMX20_02355at 2483.621 kb on + strand, within MPMX20_02355at 2483.685 kb on - strand, within MPMX20_02355at 2483.699 kb on + strand, within MPMX20_02355at 2483.707 kb on + strand, within MPMX20_02355at 2483.895 kb on - strand, within MPMX20_02355at 2483.964 kb on + strandat 2483.972 kb on - strandat 2484.030 kb on - strandat 2484.030 kb on - strandat 2484.129 kb on - strandat 2484.146 kb on + strand, within MPMX20_02356at 2484.154 kb on - strand, within MPMX20_02356at 2484.180 kb on + strand, within MPMX20_02356at 2484.184 kb on - strand, within MPMX20_02356at 2484.198 kb on - strand, within MPMX20_02356at 2484.206 kb on - strand, within MPMX20_02356at 2484.217 kb on - strand, within MPMX20_02356at 2484.227 kb on - strand, within MPMX20_02356at 2484.253 kb on + strand, within MPMX20_02356at 2484.253 kb on + strand, within MPMX20_02356at 2484.253 kb on + strand, within MPMX20_02356at 2484.253 kb on + strand, within MPMX20_02356at 2484.253 kb on + strand, within MPMX20_02356at 2484.260 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.261 kb on - strand, within MPMX20_02356at 2484.322 kb on + strand, within MPMX20_02356at 2484.335 kb on + strand, within MPMX20_02356at 2484.348 kb on - strand, within MPMX20_02356at 2484.363 kb on - strand, within MPMX20_02356

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090
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2,481,537 - MPMX20_02353 0.51 -1.4
2,481,545 - MPMX20_02353 0.52 -1.7
2,481,601 - MPMX20_02353 0.55 -0.8
2,481,601 - MPMX20_02353 0.55 -0.1
2,481,638 + MPMX20_02353 0.58 +1.2
2,481,646 - MPMX20_02353 0.59 +0.9
2,481,740 + MPMX20_02353 0.65 -3.1
2,481,831 + MPMX20_02353 0.71 -1.0
2,481,839 + MPMX20_02353 0.72 -1.8
2,481,847 - MPMX20_02353 0.72 -1.2
2,481,847 - MPMX20_02353 0.72 -0.8
2,481,852 + MPMX20_02353 0.72 +1.0
2,481,860 - MPMX20_02353 0.73 -0.4
2,481,871 - MPMX20_02353 0.74 -1.1
2,481,899 + MPMX20_02353 0.76 -1.2
2,481,906 + MPMX20_02353 0.76 -1.4
2,481,914 - MPMX20_02353 0.77 -0.0
2,481,914 - MPMX20_02353 0.77 -0.7
2,481,944 + MPMX20_02353 0.79 +0.4
2,481,973 + MPMX20_02353 0.81 -2.0
2,481,973 + MPMX20_02353 0.81 -2.0
2,481,981 - MPMX20_02353 0.81 -2.1
2,481,981 - MPMX20_02353 0.81 -0.0
2,481,981 - MPMX20_02353 0.81 -2.5
2,482,096 + MPMX20_02353 0.89 -2.6
2,482,131 + -2.3
2,482,139 - -0.8
2,482,185 + -0.2
2,482,190 - +0.5
2,482,249 - -1.7
2,482,287 + +1.0
2,482,295 - -1.4
2,482,295 - -0.0
2,482,332 + -0.0
2,482,537 + -0.6
2,482,545 + -2.5
2,482,553 - -0.1
2,482,553 - +1.2
2,482,667 - MPMX20_02354 0.16 +1.6
2,482,681 + MPMX20_02354 0.18 -1.4
2,482,763 + MPMX20_02354 0.28 -1.9
2,482,763 + MPMX20_02354 0.28 -3.1
2,482,763 + MPMX20_02354 0.28 -2.1
2,482,763 + MPMX20_02354 0.28 -0.4
2,482,771 - MPMX20_02354 0.29 +2.2
2,482,834 + MPMX20_02354 0.36 -0.9
2,482,885 - MPMX20_02354 0.42 +0.4
2,483,072 + MPMX20_02354 0.64 -1.6
2,483,072 + MPMX20_02354 0.64 -1.3
2,483,072 + MPMX20_02354 0.64 -0.4
2,483,080 - MPMX20_02354 0.65 -1.1
2,483,080 - MPMX20_02354 0.65 +0.7
2,483,080 - MPMX20_02354 0.65 -0.4
2,483,082 + MPMX20_02354 0.65 -0.7
2,483,085 - MPMX20_02354 0.65 +1.6
2,483,085 - MPMX20_02354 0.65 +0.2
2,483,090 - MPMX20_02354 0.66 -1.3
2,483,267 - MPMX20_02354 0.87 -1.1
2,483,300 - +0.6
2,483,312 - -2.8
2,483,376 + -0.6
2,483,384 - -0.4
2,483,424 + -0.3
2,483,431 - +0.6
2,483,469 + MPMX20_02355 0.13 -0.6
2,483,477 - MPMX20_02355 0.14 -1.5
2,483,575 + MPMX20_02355 0.31 +1.0
2,483,621 + MPMX20_02355 0.39 -1.4
2,483,685 - MPMX20_02355 0.51 +0.4
2,483,699 + MPMX20_02355 0.53 -1.0
2,483,707 + MPMX20_02355 0.54 +0.8
2,483,895 - MPMX20_02355 0.87 -0.5
2,483,964 + -0.4
2,483,972 - -2.2
2,484,030 - -0.3
2,484,030 - -0.5
2,484,129 - -0.4
2,484,146 + MPMX20_02356 0.11 -1.0
2,484,154 - MPMX20_02356 0.11 -3.0
2,484,180 + MPMX20_02356 0.13 -1.4
2,484,184 - MPMX20_02356 0.13 +0.2
2,484,198 - MPMX20_02356 0.14 +0.3
2,484,206 - MPMX20_02356 0.14 +0.2
2,484,217 - MPMX20_02356 0.15 -1.9
2,484,227 - MPMX20_02356 0.16 +0.6
2,484,253 + MPMX20_02356 0.17 +1.6
2,484,253 + MPMX20_02356 0.17 -2.2
2,484,253 + MPMX20_02356 0.17 +1.5
2,484,253 + MPMX20_02356 0.17 -0.1
2,484,253 + MPMX20_02356 0.17 -2.9
2,484,260 - MPMX20_02356 0.18 -0.6
2,484,261 - MPMX20_02356 0.18 -0.5
2,484,261 - MPMX20_02356 0.18 -2.1
2,484,261 - MPMX20_02356 0.18 -1.6
2,484,261 - MPMX20_02356 0.18 +0.5
2,484,261 - MPMX20_02356 0.18 -0.3
2,484,261 - MPMX20_02356 0.18 +1.1
2,484,261 - MPMX20_02356 0.18 -0.4
2,484,261 - MPMX20_02356 0.18 -1.8
2,484,261 - MPMX20_02356 0.18 -1.1
2,484,261 - MPMX20_02356 0.18 -0.7
2,484,322 + MPMX20_02356 0.22 -0.6
2,484,335 + MPMX20_02356 0.23 +2.2
2,484,348 - MPMX20_02356 0.24 -0.6
2,484,363 - MPMX20_02356 0.25 -0.9

Or see this region's nucleotide sequence