Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02353 and MPMX20_02354 are separated by 266 nucleotides MPMX20_02354 and MPMX20_02355 are separated by 12 nucleotides MPMX20_02355 and MPMX20_02356 are separated by 15 nucleotides
MPMX20_02353: MPMX20_02353 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 2,480,779 to 2,482,260
_02353
MPMX20_02354: MPMX20_02354 - hypothetical protein, at 2,482,527 to 2,483,381
_02354
MPMX20_02355: MPMX20_02355 - D-alanyl-D-alanine dipeptidase, at 2,483,394 to 2,483,969
_02355
MPMX20_02356: MPMX20_02356 - putative D,D-dipeptide-binding periplasmic protein DdpA, at 2,483,985 to 2,485,517
_02356
Position (kb)
2482
2483
2484 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2481.537 kb on - strand, within MPMX20_02353 at 2481.545 kb on - strand, within MPMX20_02353 at 2481.601 kb on - strand, within MPMX20_02353 at 2481.601 kb on - strand, within MPMX20_02353 at 2481.638 kb on + strand, within MPMX20_02353 at 2481.646 kb on - strand, within MPMX20_02353 at 2481.740 kb on + strand, within MPMX20_02353 at 2481.831 kb on + strand, within MPMX20_02353 at 2481.839 kb on + strand, within MPMX20_02353 at 2481.847 kb on - strand, within MPMX20_02353 at 2481.847 kb on - strand, within MPMX20_02353 at 2481.852 kb on + strand, within MPMX20_02353 at 2481.860 kb on - strand, within MPMX20_02353 at 2481.871 kb on - strand, within MPMX20_02353 at 2481.899 kb on + strand, within MPMX20_02353 at 2481.906 kb on + strand, within MPMX20_02353 at 2481.914 kb on - strand, within MPMX20_02353 at 2481.914 kb on - strand, within MPMX20_02353 at 2481.944 kb on + strand, within MPMX20_02353 at 2481.973 kb on + strand, within MPMX20_02353 at 2481.973 kb on + strand, within MPMX20_02353 at 2481.981 kb on - strand, within MPMX20_02353 at 2481.981 kb on - strand, within MPMX20_02353 at 2481.981 kb on - strand, within MPMX20_02353 at 2482.096 kb on + strand, within MPMX20_02353 at 2482.131 kb on + strand at 2482.139 kb on - strand at 2482.185 kb on + strand at 2482.190 kb on - strand at 2482.249 kb on - strand at 2482.287 kb on + strand at 2482.295 kb on - strand at 2482.295 kb on - strand at 2482.332 kb on + strand at 2482.537 kb on + strand at 2482.545 kb on + strand at 2482.553 kb on - strand at 2482.553 kb on - strand at 2482.667 kb on - strand, within MPMX20_02354 at 2482.681 kb on + strand, within MPMX20_02354 at 2482.763 kb on + strand, within MPMX20_02354 at 2482.763 kb on + strand, within MPMX20_02354 at 2482.763 kb on + strand, within MPMX20_02354 at 2482.763 kb on + strand, within MPMX20_02354 at 2482.771 kb on - strand, within MPMX20_02354 at 2482.834 kb on + strand, within MPMX20_02354 at 2482.885 kb on - strand, within MPMX20_02354 at 2483.072 kb on + strand, within MPMX20_02354 at 2483.072 kb on + strand, within MPMX20_02354 at 2483.072 kb on + strand, within MPMX20_02354 at 2483.080 kb on - strand, within MPMX20_02354 at 2483.080 kb on - strand, within MPMX20_02354 at 2483.080 kb on - strand, within MPMX20_02354 at 2483.082 kb on + strand, within MPMX20_02354 at 2483.085 kb on - strand, within MPMX20_02354 at 2483.085 kb on - strand, within MPMX20_02354 at 2483.090 kb on - strand, within MPMX20_02354 at 2483.267 kb on - strand, within MPMX20_02354 at 2483.300 kb on - strand at 2483.312 kb on - strand at 2483.376 kb on + strand at 2483.384 kb on - strand at 2483.424 kb on + strand at 2483.431 kb on - strand at 2483.469 kb on + strand, within MPMX20_02355 at 2483.477 kb on - strand, within MPMX20_02355 at 2483.575 kb on + strand, within MPMX20_02355 at 2483.621 kb on + strand, within MPMX20_02355 at 2483.685 kb on - strand, within MPMX20_02355 at 2483.699 kb on + strand, within MPMX20_02355 at 2483.707 kb on + strand, within MPMX20_02355 at 2483.895 kb on - strand, within MPMX20_02355 at 2483.964 kb on + strand at 2483.972 kb on - strand at 2484.030 kb on - strand at 2484.030 kb on - strand at 2484.129 kb on - strand at 2484.146 kb on + strand, within MPMX20_02356 at 2484.154 kb on - strand, within MPMX20_02356 at 2484.180 kb on + strand, within MPMX20_02356 at 2484.184 kb on - strand, within MPMX20_02356 at 2484.198 kb on - strand, within MPMX20_02356 at 2484.206 kb on - strand, within MPMX20_02356 at 2484.217 kb on - strand, within MPMX20_02356 at 2484.227 kb on - strand, within MPMX20_02356 at 2484.253 kb on + strand, within MPMX20_02356 at 2484.253 kb on + strand, within MPMX20_02356 at 2484.253 kb on + strand, within MPMX20_02356 at 2484.253 kb on + strand, within MPMX20_02356 at 2484.253 kb on + strand, within MPMX20_02356 at 2484.260 kb on - strand, within MPMX20_02356 at 2484.261 kb on - strand, within MPMX20_02356 at 2484.261 kb on - strand, within MPMX20_02356 at 2484.261 kb on - strand, within MPMX20_02356 at 2484.261 kb on - strand, within MPMX20_02356 at 2484.261 kb on - strand, within MPMX20_02356 at 2484.261 kb on - strand, within MPMX20_02356 at 2484.261 kb on - strand, within MPMX20_02356 at 2484.261 kb on - strand, within MPMX20_02356 at 2484.261 kb on - strand, within MPMX20_02356 at 2484.261 kb on - strand, within MPMX20_02356 at 2484.322 kb on + strand, within MPMX20_02356 at 2484.335 kb on + strand, within MPMX20_02356 at 2484.348 kb on - strand, within MPMX20_02356 at 2484.363 kb on - strand, within MPMX20_02356
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090 remove 2,481,537 - MPMX20_02353 0.51 -1.4 2,481,545 - MPMX20_02353 0.52 -1.7 2,481,601 - MPMX20_02353 0.55 -0.8 2,481,601 - MPMX20_02353 0.55 -0.1 2,481,638 + MPMX20_02353 0.58 +1.2 2,481,646 - MPMX20_02353 0.59 +0.9 2,481,740 + MPMX20_02353 0.65 -3.1 2,481,831 + MPMX20_02353 0.71 -1.0 2,481,839 + MPMX20_02353 0.72 -1.8 2,481,847 - MPMX20_02353 0.72 -1.2 2,481,847 - MPMX20_02353 0.72 -0.8 2,481,852 + MPMX20_02353 0.72 +1.0 2,481,860 - MPMX20_02353 0.73 -0.4 2,481,871 - MPMX20_02353 0.74 -1.1 2,481,899 + MPMX20_02353 0.76 -1.2 2,481,906 + MPMX20_02353 0.76 -1.4 2,481,914 - MPMX20_02353 0.77 -0.0 2,481,914 - MPMX20_02353 0.77 -0.7 2,481,944 + MPMX20_02353 0.79 +0.4 2,481,973 + MPMX20_02353 0.81 -2.0 2,481,973 + MPMX20_02353 0.81 -2.0 2,481,981 - MPMX20_02353 0.81 -2.1 2,481,981 - MPMX20_02353 0.81 -0.0 2,481,981 - MPMX20_02353 0.81 -2.5 2,482,096 + MPMX20_02353 0.89 -2.6 2,482,131 + -2.3 2,482,139 - -0.8 2,482,185 + -0.2 2,482,190 - +0.5 2,482,249 - -1.7 2,482,287 + +1.0 2,482,295 - -1.4 2,482,295 - -0.0 2,482,332 + -0.0 2,482,537 + -0.6 2,482,545 + -2.5 2,482,553 - -0.1 2,482,553 - +1.2 2,482,667 - MPMX20_02354 0.16 +1.6 2,482,681 + MPMX20_02354 0.18 -1.4 2,482,763 + MPMX20_02354 0.28 -1.9 2,482,763 + MPMX20_02354 0.28 -3.1 2,482,763 + MPMX20_02354 0.28 -2.1 2,482,763 + MPMX20_02354 0.28 -0.4 2,482,771 - MPMX20_02354 0.29 +2.2 2,482,834 + MPMX20_02354 0.36 -0.9 2,482,885 - MPMX20_02354 0.42 +0.4 2,483,072 + MPMX20_02354 0.64 -1.6 2,483,072 + MPMX20_02354 0.64 -1.3 2,483,072 + MPMX20_02354 0.64 -0.4 2,483,080 - MPMX20_02354 0.65 -1.1 2,483,080 - MPMX20_02354 0.65 +0.7 2,483,080 - MPMX20_02354 0.65 -0.4 2,483,082 + MPMX20_02354 0.65 -0.7 2,483,085 - MPMX20_02354 0.65 +1.6 2,483,085 - MPMX20_02354 0.65 +0.2 2,483,090 - MPMX20_02354 0.66 -1.3 2,483,267 - MPMX20_02354 0.87 -1.1 2,483,300 - +0.6 2,483,312 - -2.8 2,483,376 + -0.6 2,483,384 - -0.4 2,483,424 + -0.3 2,483,431 - +0.6 2,483,469 + MPMX20_02355 0.13 -0.6 2,483,477 - MPMX20_02355 0.14 -1.5 2,483,575 + MPMX20_02355 0.31 +1.0 2,483,621 + MPMX20_02355 0.39 -1.4 2,483,685 - MPMX20_02355 0.51 +0.4 2,483,699 + MPMX20_02355 0.53 -1.0 2,483,707 + MPMX20_02355 0.54 +0.8 2,483,895 - MPMX20_02355 0.87 -0.5 2,483,964 + -0.4 2,483,972 - -2.2 2,484,030 - -0.3 2,484,030 - -0.5 2,484,129 - -0.4 2,484,146 + MPMX20_02356 0.11 -1.0 2,484,154 - MPMX20_02356 0.11 -3.0 2,484,180 + MPMX20_02356 0.13 -1.4 2,484,184 - MPMX20_02356 0.13 +0.2 2,484,198 - MPMX20_02356 0.14 +0.3 2,484,206 - MPMX20_02356 0.14 +0.2 2,484,217 - MPMX20_02356 0.15 -1.9 2,484,227 - MPMX20_02356 0.16 +0.6 2,484,253 + MPMX20_02356 0.17 +1.6 2,484,253 + MPMX20_02356 0.17 -2.2 2,484,253 + MPMX20_02356 0.17 +1.5 2,484,253 + MPMX20_02356 0.17 -0.1 2,484,253 + MPMX20_02356 0.17 -2.9 2,484,260 - MPMX20_02356 0.18 -0.6 2,484,261 - MPMX20_02356 0.18 -0.5 2,484,261 - MPMX20_02356 0.18 -2.1 2,484,261 - MPMX20_02356 0.18 -1.6 2,484,261 - MPMX20_02356 0.18 +0.5 2,484,261 - MPMX20_02356 0.18 -0.3 2,484,261 - MPMX20_02356 0.18 +1.1 2,484,261 - MPMX20_02356 0.18 -0.4 2,484,261 - MPMX20_02356 0.18 -1.8 2,484,261 - MPMX20_02356 0.18 -1.1 2,484,261 - MPMX20_02356 0.18 -0.7 2,484,322 + MPMX20_02356 0.22 -0.6 2,484,335 + MPMX20_02356 0.23 +2.2 2,484,348 - MPMX20_02356 0.24 -0.6 2,484,363 - MPMX20_02356 0.25 -0.9
Or see this region's nucleotide sequence