Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03748

Experiment: TSB plate, 1:1 coculture with Paenibacillus lautus TBS_090

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03746 and MPMX20_03747 are separated by 80 nucleotidesMPMX20_03747 and MPMX20_03748 are separated by 162 nucleotidesMPMX20_03748 and MPMX20_03749 are separated by 39 nucleotides MPMX20_03746: MPMX20_03746 - tRNA-Gly, at 3,948,799 to 3,948,872 _03746 MPMX20_03747: MPMX20_03747 - Murein hydrolase activator NlpD, at 3,948,953 to 3,949,693 _03747 MPMX20_03748: MPMX20_03748 - Isopentenyl-diphosphate Delta-isomerase, at 3,949,856 to 3,950,398 _03748 MPMX20_03749: MPMX20_03749 - Lysine--tRNA ligase, at 3,950,438 to 3,951,955 _03749 Position (kb) 3949 3950 3951Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3948.871 kb on + strandat 3948.871 kb on + strandat 3948.872 kb on + strandat 3948.879 kb on - strandat 3948.879 kb on - strandat 3948.879 kb on - strandat 3948.879 kb on - strandat 3948.879 kb on - strandat 3948.888 kb on + strandat 3948.898 kb on + strandat 3948.899 kb on - strandat 3948.920 kb on - strandat 3948.984 kb on + strandat 3949.112 kb on - strand, within MPMX20_03747at 3949.142 kb on + strand, within MPMX20_03747at 3949.150 kb on - strand, within MPMX20_03747at 3949.174 kb on + strand, within MPMX20_03747at 3949.210 kb on + strand, within MPMX20_03747at 3949.211 kb on - strand, within MPMX20_03747at 3949.239 kb on + strand, within MPMX20_03747at 3949.255 kb on - strand, within MPMX20_03747at 3949.287 kb on + strand, within MPMX20_03747at 3949.293 kb on + strand, within MPMX20_03747at 3949.316 kb on - strand, within MPMX20_03747at 3949.332 kb on + strand, within MPMX20_03747at 3949.332 kb on + strand, within MPMX20_03747at 3949.356 kb on + strand, within MPMX20_03747at 3949.374 kb on + strand, within MPMX20_03747at 3949.382 kb on - strand, within MPMX20_03747at 3949.382 kb on - strand, within MPMX20_03747at 3949.396 kb on - strand, within MPMX20_03747at 3949.470 kb on - strand, within MPMX20_03747at 3949.477 kb on - strand, within MPMX20_03747at 3949.525 kb on - strand, within MPMX20_03747at 3949.525 kb on - strand, within MPMX20_03747at 3949.546 kb on + strand, within MPMX20_03747at 3949.546 kb on + strand, within MPMX20_03747at 3949.554 kb on - strand, within MPMX20_03747at 3949.554 kb on - strand, within MPMX20_03747at 3949.554 kb on - strand, within MPMX20_03747at 3949.574 kb on - strand, within MPMX20_03747at 3949.587 kb on - strand, within MPMX20_03747at 3949.597 kb on - strand, within MPMX20_03747at 3949.609 kb on + strand, within MPMX20_03747at 3949.631 kb on - strandat 3949.691 kb on + strandat 3949.724 kb on + strandat 3949.724 kb on + strandat 3949.743 kb on - strandat 3949.743 kb on - strandat 3949.750 kb on + strandat 3949.755 kb on + strandat 3949.797 kb on - strandat 3949.799 kb on + strandat 3949.819 kb on + strandat 3949.819 kb on + strandat 3949.921 kb on - strand, within MPMX20_03748at 3949.951 kb on + strand, within MPMX20_03748at 3950.031 kb on + strand, within MPMX20_03748at 3950.047 kb on - strand, within MPMX20_03748at 3950.073 kb on - strand, within MPMX20_03748at 3950.073 kb on - strand, within MPMX20_03748at 3950.120 kb on - strand, within MPMX20_03748at 3950.154 kb on + strand, within MPMX20_03748at 3950.272 kb on + strand, within MPMX20_03748at 3950.278 kb on - strand, within MPMX20_03748at 3950.294 kb on + strand, within MPMX20_03748at 3950.294 kb on + strand, within MPMX20_03748at 3950.328 kb on + strand, within MPMX20_03748at 3950.328 kb on + strand, within MPMX20_03748at 3950.328 kb on + strand, within MPMX20_03748at 3950.329 kb on - strand, within MPMX20_03748at 3950.336 kb on - strand, within MPMX20_03748at 3950.353 kb on + strandat 3950.372 kb on - strandat 3950.383 kb on - strandat 3950.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Paenibacillus lautus TBS_090
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3,948,871 + -2.9
3,948,871 + +1.9
3,948,872 + -1.4
3,948,879 - +1.3
3,948,879 - +1.7
3,948,879 - -1.7
3,948,879 - -0.8
3,948,879 - +0.7
3,948,888 + -0.5
3,948,898 + -2.7
3,948,899 - +1.5
3,948,920 - +0.4
3,948,984 + -1.0
3,949,112 - MPMX20_03747 0.21 -2.3
3,949,142 + MPMX20_03747 0.26 +0.2
3,949,150 - MPMX20_03747 0.27 +3.0
3,949,174 + MPMX20_03747 0.30 -1.4
3,949,210 + MPMX20_03747 0.35 -0.0
3,949,211 - MPMX20_03747 0.35 -1.8
3,949,239 + MPMX20_03747 0.39 +0.9
3,949,255 - MPMX20_03747 0.41 -2.6
3,949,287 + MPMX20_03747 0.45 +0.1
3,949,293 + MPMX20_03747 0.46 +1.7
3,949,316 - MPMX20_03747 0.49 -0.5
3,949,332 + MPMX20_03747 0.51 +1.3
3,949,332 + MPMX20_03747 0.51 +1.1
3,949,356 + MPMX20_03747 0.54 -1.4
3,949,374 + MPMX20_03747 0.57 +1.1
3,949,382 - MPMX20_03747 0.58 +0.3
3,949,382 - MPMX20_03747 0.58 -0.3
3,949,396 - MPMX20_03747 0.60 +0.0
3,949,470 - MPMX20_03747 0.70 -0.6
3,949,477 - MPMX20_03747 0.71 +2.9
3,949,525 - MPMX20_03747 0.77 -0.8
3,949,525 - MPMX20_03747 0.77 -0.3
3,949,546 + MPMX20_03747 0.80 +0.7
3,949,546 + MPMX20_03747 0.80 -1.2
3,949,554 - MPMX20_03747 0.81 -2.3
3,949,554 - MPMX20_03747 0.81 +0.8
3,949,554 - MPMX20_03747 0.81 -0.7
3,949,574 - MPMX20_03747 0.84 -1.3
3,949,587 - MPMX20_03747 0.86 -0.3
3,949,597 - MPMX20_03747 0.87 -0.5
3,949,609 + MPMX20_03747 0.89 +0.2
3,949,631 - -1.8
3,949,691 + -0.8
3,949,724 + +1.7
3,949,724 + +1.7
3,949,743 - -2.0
3,949,743 - +0.1
3,949,750 + -1.6
3,949,755 + +0.7
3,949,797 - -2.5
3,949,799 + -2.3
3,949,819 + -2.2
3,949,819 + -2.3
3,949,921 - MPMX20_03748 0.12 -0.5
3,949,951 + MPMX20_03748 0.17 -2.3
3,950,031 + MPMX20_03748 0.32 -0.3
3,950,047 - MPMX20_03748 0.35 +2.3
3,950,073 - MPMX20_03748 0.40 -0.1
3,950,073 - MPMX20_03748 0.40 +2.7
3,950,120 - MPMX20_03748 0.49 +2.6
3,950,154 + MPMX20_03748 0.55 -1.4
3,950,272 + MPMX20_03748 0.77 -0.2
3,950,278 - MPMX20_03748 0.78 -2.2
3,950,294 + MPMX20_03748 0.81 +0.4
3,950,294 + MPMX20_03748 0.81 +1.1
3,950,328 + MPMX20_03748 0.87 -1.1
3,950,328 + MPMX20_03748 0.87 -0.6
3,950,328 + MPMX20_03748 0.87 +1.8
3,950,329 - MPMX20_03748 0.87 +0.8
3,950,336 - MPMX20_03748 0.88 +0.2
3,950,353 + -1.1
3,950,372 - +2.0
3,950,383 - +0.7
3,950,448 - +0.6

Or see this region's nucleotide sequence