Experiment: TSB plate, 1:1 coculture with Paenibacillus lautus TBS_090
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03746 and MPMX20_03747 are separated by 80 nucleotides MPMX20_03747 and MPMX20_03748 are separated by 162 nucleotides MPMX20_03748 and MPMX20_03749 are separated by 39 nucleotides
MPMX20_03746: MPMX20_03746 - tRNA-Gly, at 3,948,799 to 3,948,872
_03746
MPMX20_03747: MPMX20_03747 - Murein hydrolase activator NlpD, at 3,948,953 to 3,949,693
_03747
MPMX20_03748: MPMX20_03748 - Isopentenyl-diphosphate Delta-isomerase, at 3,949,856 to 3,950,398
_03748
MPMX20_03749: MPMX20_03749 - Lysine--tRNA ligase, at 3,950,438 to 3,951,955
_03749
Position (kb)
3949
3950
3951 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3948.871 kb on + strand at 3948.871 kb on + strand at 3948.872 kb on + strand at 3948.879 kb on - strand at 3948.879 kb on - strand at 3948.879 kb on - strand at 3948.879 kb on - strand at 3948.879 kb on - strand at 3948.888 kb on + strand at 3948.898 kb on + strand at 3948.899 kb on - strand at 3948.920 kb on - strand at 3948.984 kb on + strand at 3949.112 kb on - strand, within MPMX20_03747 at 3949.142 kb on + strand, within MPMX20_03747 at 3949.150 kb on - strand, within MPMX20_03747 at 3949.174 kb on + strand, within MPMX20_03747 at 3949.210 kb on + strand, within MPMX20_03747 at 3949.211 kb on - strand, within MPMX20_03747 at 3949.239 kb on + strand, within MPMX20_03747 at 3949.255 kb on - strand, within MPMX20_03747 at 3949.287 kb on + strand, within MPMX20_03747 at 3949.293 kb on + strand, within MPMX20_03747 at 3949.316 kb on - strand, within MPMX20_03747 at 3949.332 kb on + strand, within MPMX20_03747 at 3949.332 kb on + strand, within MPMX20_03747 at 3949.356 kb on + strand, within MPMX20_03747 at 3949.374 kb on + strand, within MPMX20_03747 at 3949.382 kb on - strand, within MPMX20_03747 at 3949.382 kb on - strand, within MPMX20_03747 at 3949.396 kb on - strand, within MPMX20_03747 at 3949.470 kb on - strand, within MPMX20_03747 at 3949.477 kb on - strand, within MPMX20_03747 at 3949.525 kb on - strand, within MPMX20_03747 at 3949.525 kb on - strand, within MPMX20_03747 at 3949.546 kb on + strand, within MPMX20_03747 at 3949.546 kb on + strand, within MPMX20_03747 at 3949.554 kb on - strand, within MPMX20_03747 at 3949.554 kb on - strand, within MPMX20_03747 at 3949.554 kb on - strand, within MPMX20_03747 at 3949.574 kb on - strand, within MPMX20_03747 at 3949.587 kb on - strand, within MPMX20_03747 at 3949.597 kb on - strand, within MPMX20_03747 at 3949.609 kb on + strand, within MPMX20_03747 at 3949.631 kb on - strand at 3949.691 kb on + strand at 3949.724 kb on + strand at 3949.724 kb on + strand at 3949.743 kb on - strand at 3949.743 kb on - strand at 3949.750 kb on + strand at 3949.755 kb on + strand at 3949.797 kb on - strand at 3949.799 kb on + strand at 3949.819 kb on + strand at 3949.819 kb on + strand at 3949.921 kb on - strand, within MPMX20_03748 at 3949.951 kb on + strand, within MPMX20_03748 at 3950.031 kb on + strand, within MPMX20_03748 at 3950.047 kb on - strand, within MPMX20_03748 at 3950.073 kb on - strand, within MPMX20_03748 at 3950.073 kb on - strand, within MPMX20_03748 at 3950.120 kb on - strand, within MPMX20_03748 at 3950.154 kb on + strand, within MPMX20_03748 at 3950.272 kb on + strand, within MPMX20_03748 at 3950.278 kb on - strand, within MPMX20_03748 at 3950.294 kb on + strand, within MPMX20_03748 at 3950.294 kb on + strand, within MPMX20_03748 at 3950.328 kb on + strand, within MPMX20_03748 at 3950.328 kb on + strand, within MPMX20_03748 at 3950.328 kb on + strand, within MPMX20_03748 at 3950.329 kb on - strand, within MPMX20_03748 at 3950.336 kb on - strand, within MPMX20_03748 at 3950.353 kb on + strand at 3950.372 kb on - strand at 3950.383 kb on - strand at 3950.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Paenibacillus lautus TBS_090 remove 3,948,871 + -2.9 3,948,871 + +1.9 3,948,872 + -1.4 3,948,879 - +1.3 3,948,879 - +1.7 3,948,879 - -1.7 3,948,879 - -0.8 3,948,879 - +0.7 3,948,888 + -0.5 3,948,898 + -2.7 3,948,899 - +1.5 3,948,920 - +0.4 3,948,984 + -1.0 3,949,112 - MPMX20_03747 0.21 -2.3 3,949,142 + MPMX20_03747 0.26 +0.2 3,949,150 - MPMX20_03747 0.27 +3.0 3,949,174 + MPMX20_03747 0.30 -1.4 3,949,210 + MPMX20_03747 0.35 -0.0 3,949,211 - MPMX20_03747 0.35 -1.8 3,949,239 + MPMX20_03747 0.39 +0.9 3,949,255 - MPMX20_03747 0.41 -2.6 3,949,287 + MPMX20_03747 0.45 +0.1 3,949,293 + MPMX20_03747 0.46 +1.7 3,949,316 - MPMX20_03747 0.49 -0.5 3,949,332 + MPMX20_03747 0.51 +1.3 3,949,332 + MPMX20_03747 0.51 +1.1 3,949,356 + MPMX20_03747 0.54 -1.4 3,949,374 + MPMX20_03747 0.57 +1.1 3,949,382 - MPMX20_03747 0.58 +0.3 3,949,382 - MPMX20_03747 0.58 -0.3 3,949,396 - MPMX20_03747 0.60 +0.0 3,949,470 - MPMX20_03747 0.70 -0.6 3,949,477 - MPMX20_03747 0.71 +2.9 3,949,525 - MPMX20_03747 0.77 -0.8 3,949,525 - MPMX20_03747 0.77 -0.3 3,949,546 + MPMX20_03747 0.80 +0.7 3,949,546 + MPMX20_03747 0.80 -1.2 3,949,554 - MPMX20_03747 0.81 -2.3 3,949,554 - MPMX20_03747 0.81 +0.8 3,949,554 - MPMX20_03747 0.81 -0.7 3,949,574 - MPMX20_03747 0.84 -1.3 3,949,587 - MPMX20_03747 0.86 -0.3 3,949,597 - MPMX20_03747 0.87 -0.5 3,949,609 + MPMX20_03747 0.89 +0.2 3,949,631 - -1.8 3,949,691 + -0.8 3,949,724 + +1.7 3,949,724 + +1.7 3,949,743 - -2.0 3,949,743 - +0.1 3,949,750 + -1.6 3,949,755 + +0.7 3,949,797 - -2.5 3,949,799 + -2.3 3,949,819 + -2.2 3,949,819 + -2.3 3,949,921 - MPMX20_03748 0.12 -0.5 3,949,951 + MPMX20_03748 0.17 -2.3 3,950,031 + MPMX20_03748 0.32 -0.3 3,950,047 - MPMX20_03748 0.35 +2.3 3,950,073 - MPMX20_03748 0.40 -0.1 3,950,073 - MPMX20_03748 0.40 +2.7 3,950,120 - MPMX20_03748 0.49 +2.6 3,950,154 + MPMX20_03748 0.55 -1.4 3,950,272 + MPMX20_03748 0.77 -0.2 3,950,278 - MPMX20_03748 0.78 -2.2 3,950,294 + MPMX20_03748 0.81 +0.4 3,950,294 + MPMX20_03748 0.81 +1.1 3,950,328 + MPMX20_03748 0.87 -1.1 3,950,328 + MPMX20_03748 0.87 -0.6 3,950,328 + MPMX20_03748 0.87 +1.8 3,950,329 - MPMX20_03748 0.87 +0.8 3,950,336 - MPMX20_03748 0.88 +0.2 3,950,353 + -1.1 3,950,372 - +2.0 3,950,383 - +0.7 3,950,448 - +0.6
Or see this region's nucleotide sequence