Experiment: TSB plate, 1:1 coculture with Paenibacillus lautus TBS_090
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02485 and MPMX20_02486 are separated by 156 nucleotides MPMX20_02486 and MPMX20_02487 are separated by 88 nucleotides
MPMX20_02485: MPMX20_02485 - Enoyl-[acyl-carrier-protein] reductase [NADH] FabI, at 2,624,334 to 2,625,122
_02485
MPMX20_02486: MPMX20_02486 - hypothetical protein, at 2,625,279 to 2,626,265
_02486
MPMX20_02487: MPMX20_02487 - Exoribonuclease 2, at 2,626,354 to 2,628,288
_02487
Position (kb)
2625
2626
2627 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 2625.138 kb on - strand at 2625.141 kb on + strand at 2625.151 kb on + strand at 2625.183 kb on + strand at 2625.227 kb on + strand at 2625.232 kb on + strand at 2625.235 kb on - strand at 2625.240 kb on - strand at 2625.290 kb on - strand at 2625.306 kb on + strand at 2625.314 kb on - strand at 2625.318 kb on + strand at 2625.344 kb on + strand at 2625.352 kb on - strand at 2625.454 kb on - strand, within MPMX20_02486 at 2625.454 kb on - strand, within MPMX20_02486 at 2625.479 kb on - strand, within MPMX20_02486 at 2625.496 kb on + strand, within MPMX20_02486 at 2625.522 kb on + strand, within MPMX20_02486 at 2625.541 kb on - strand, within MPMX20_02486 at 2625.560 kb on + strand, within MPMX20_02486 at 2625.560 kb on + strand, within MPMX20_02486 at 2625.560 kb on + strand, within MPMX20_02486 at 2625.560 kb on + strand, within MPMX20_02486 at 2625.568 kb on - strand, within MPMX20_02486 at 2625.568 kb on - strand, within MPMX20_02486 at 2625.568 kb on - strand, within MPMX20_02486 at 2625.568 kb on - strand, within MPMX20_02486 at 2625.595 kb on - strand, within MPMX20_02486 at 2625.619 kb on + strand, within MPMX20_02486 at 2625.678 kb on + strand, within MPMX20_02486 at 2625.691 kb on + strand, within MPMX20_02486 at 2625.699 kb on - strand, within MPMX20_02486 at 2625.747 kb on + strand, within MPMX20_02486 at 2625.755 kb on - strand, within MPMX20_02486 at 2625.755 kb on - strand, within MPMX20_02486 at 2625.822 kb on - strand, within MPMX20_02486 at 2625.837 kb on + strand, within MPMX20_02486 at 2625.837 kb on + strand, within MPMX20_02486 at 2625.896 kb on + strand, within MPMX20_02486 at 2625.927 kb on - strand, within MPMX20_02486 at 2625.929 kb on + strand, within MPMX20_02486 at 2625.937 kb on - strand, within MPMX20_02486 at 2625.945 kb on + strand, within MPMX20_02486 at 2625.972 kb on - strand, within MPMX20_02486 at 2626.010 kb on - strand, within MPMX20_02486 at 2626.020 kb on - strand, within MPMX20_02486 at 2626.026 kb on - strand, within MPMX20_02486 at 2626.049 kb on - strand, within MPMX20_02486 at 2626.131 kb on - strand, within MPMX20_02486 at 2626.133 kb on + strand, within MPMX20_02486 at 2626.141 kb on - strand, within MPMX20_02486 at 2626.146 kb on + strand, within MPMX20_02486 at 2626.172 kb on - strand at 2626.189 kb on + strand at 2626.278 kb on + strand at 2626.370 kb on - strand at 2626.448 kb on + strand at 2626.449 kb on - strand at 2626.530 kb on + strand at 2626.605 kb on - strand, within MPMX20_02487 at 2626.628 kb on - strand, within MPMX20_02487 at 2626.686 kb on - strand, within MPMX20_02487 at 2626.800 kb on + strand, within MPMX20_02487 at 2626.835 kb on + strand, within MPMX20_02487 at 2626.854 kb on + strand, within MPMX20_02487 at 2626.854 kb on + strand, within MPMX20_02487 at 2626.862 kb on - strand, within MPMX20_02487 at 2626.933 kb on + strand, within MPMX20_02487 at 2627.059 kb on + strand, within MPMX20_02487 at 2627.155 kb on + strand, within MPMX20_02487 at 2627.160 kb on + strand, within MPMX20_02487
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Paenibacillus lautus TBS_090 remove 2,625,138 - +1.7 2,625,141 + +0.4 2,625,151 + +0.7 2,625,183 + -2.8 2,625,227 + +1.1 2,625,232 + +1.5 2,625,235 - +0.4 2,625,240 - +0.9 2,625,290 - -1.5 2,625,306 + -0.8 2,625,314 - -2.0 2,625,318 + +0.8 2,625,344 + -0.5 2,625,352 - +0.9 2,625,454 - MPMX20_02486 0.18 -0.3 2,625,454 - MPMX20_02486 0.18 -2.4 2,625,479 - MPMX20_02486 0.20 -0.6 2,625,496 + MPMX20_02486 0.22 +1.1 2,625,522 + MPMX20_02486 0.25 +2.0 2,625,541 - MPMX20_02486 0.27 -0.2 2,625,560 + MPMX20_02486 0.28 -1.7 2,625,560 + MPMX20_02486 0.28 +1.3 2,625,560 + MPMX20_02486 0.28 -2.1 2,625,560 + MPMX20_02486 0.28 -0.5 2,625,568 - MPMX20_02486 0.29 -1.0 2,625,568 - MPMX20_02486 0.29 +5.8 2,625,568 - MPMX20_02486 0.29 +0.1 2,625,568 - MPMX20_02486 0.29 -2.9 2,625,595 - MPMX20_02486 0.32 -0.5 2,625,619 + MPMX20_02486 0.34 +3.8 2,625,678 + MPMX20_02486 0.40 +1.7 2,625,691 + MPMX20_02486 0.42 -3.5 2,625,699 - MPMX20_02486 0.43 -1.0 2,625,747 + MPMX20_02486 0.47 -1.2 2,625,755 - MPMX20_02486 0.48 -0.6 2,625,755 - MPMX20_02486 0.48 +1.1 2,625,822 - MPMX20_02486 0.55 -0.1 2,625,837 + MPMX20_02486 0.57 +1.3 2,625,837 + MPMX20_02486 0.57 -0.1 2,625,896 + MPMX20_02486 0.63 +0.0 2,625,927 - MPMX20_02486 0.66 -0.2 2,625,929 + MPMX20_02486 0.66 +0.8 2,625,937 - MPMX20_02486 0.67 -3.0 2,625,945 + MPMX20_02486 0.67 +1.3 2,625,972 - MPMX20_02486 0.70 -0.9 2,626,010 - MPMX20_02486 0.74 -0.6 2,626,020 - MPMX20_02486 0.75 +0.2 2,626,026 - MPMX20_02486 0.76 +0.5 2,626,049 - MPMX20_02486 0.78 -1.8 2,626,131 - MPMX20_02486 0.86 -2.1 2,626,133 + MPMX20_02486 0.87 -3.2 2,626,141 - MPMX20_02486 0.87 -0.6 2,626,146 + MPMX20_02486 0.88 +2.1 2,626,172 - +0.4 2,626,189 + -1.6 2,626,278 + -1.0 2,626,370 - +1.9 2,626,448 + +0.8 2,626,449 - +3.6 2,626,530 + +2.5 2,626,605 - MPMX20_02487 0.13 +1.0 2,626,628 - MPMX20_02487 0.14 +1.2 2,626,686 - MPMX20_02487 0.17 -0.8 2,626,800 + MPMX20_02487 0.23 +1.6 2,626,835 + MPMX20_02487 0.25 +0.4 2,626,854 + MPMX20_02487 0.26 +1.0 2,626,854 + MPMX20_02487 0.26 +2.8 2,626,862 - MPMX20_02487 0.26 +1.9 2,626,933 + MPMX20_02487 0.30 +1.6 2,627,059 + MPMX20_02487 0.36 +1.5 2,627,155 + MPMX20_02487 0.41 +3.6 2,627,160 + MPMX20_02487 0.42 +3.6
Or see this region's nucleotide sequence