Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01843

Experiment: TSB plate, 1:1 coculture with Paenibacillus lautus TBS_090

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01841 and MPMX20_01842 are separated by 91 nucleotidesMPMX20_01842 and MPMX20_01843 are separated by 47 nucleotidesMPMX20_01843 and MPMX20_01844 are separated by 74 nucleotides MPMX20_01841: MPMX20_01841 - MltA-interacting protein, at 1,935,154 to 1,935,903 _01841 MPMX20_01842: MPMX20_01842 - putative oxidoreductase, at 1,935,995 to 1,936,849 _01842 MPMX20_01843: MPMX20_01843 - Putative glucose-6-phosphate 1-epimerase, at 1,936,897 to 1,937,781 _01843 MPMX20_01844: MPMX20_01844 - Glyceraldehyde-3-phosphate dehydrogenase A, at 1,937,856 to 1,938,851 _01844 Position (kb) 1936 1937 1938Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1935.909 kb on + strandat 1936.034 kb on + strandat 1936.121 kb on + strand, within MPMX20_01842at 1936.148 kb on + strand, within MPMX20_01842at 1936.170 kb on + strand, within MPMX20_01842at 1936.273 kb on - strand, within MPMX20_01842at 1936.297 kb on + strand, within MPMX20_01842at 1936.305 kb on - strand, within MPMX20_01842at 1936.324 kb on - strand, within MPMX20_01842at 1936.380 kb on - strand, within MPMX20_01842at 1936.466 kb on + strand, within MPMX20_01842at 1936.470 kb on - strand, within MPMX20_01842at 1936.542 kb on - strand, within MPMX20_01842at 1936.590 kb on - strand, within MPMX20_01842at 1936.602 kb on + strand, within MPMX20_01842at 1936.684 kb on + strand, within MPMX20_01842at 1936.686 kb on - strand, within MPMX20_01842at 1936.747 kb on - strand, within MPMX20_01842at 1936.758 kb on - strand, within MPMX20_01842at 1936.762 kb on + strand, within MPMX20_01842at 1936.765 kb on + strandat 1936.806 kb on - strandat 1936.829 kb on - strandat 1936.829 kb on - strandat 1936.862 kb on + strandat 1936.905 kb on + strandat 1936.905 kb on + strandat 1936.913 kb on - strandat 1936.931 kb on - strandat 1936.983 kb on - strandat 1936.988 kb on - strand, within MPMX20_01843at 1936.998 kb on - strand, within MPMX20_01843at 1937.066 kb on + strand, within MPMX20_01843at 1937.084 kb on - strand, within MPMX20_01843at 1937.099 kb on + strand, within MPMX20_01843at 1937.127 kb on - strand, within MPMX20_01843at 1937.184 kb on - strand, within MPMX20_01843at 1937.199 kb on - strand, within MPMX20_01843at 1937.234 kb on - strand, within MPMX20_01843at 1937.238 kb on + strand, within MPMX20_01843at 1937.253 kb on + strand, within MPMX20_01843at 1937.261 kb on + strand, within MPMX20_01843at 1937.269 kb on - strand, within MPMX20_01843at 1937.287 kb on + strand, within MPMX20_01843at 1937.295 kb on - strand, within MPMX20_01843at 1937.303 kb on - strand, within MPMX20_01843at 1937.401 kb on + strand, within MPMX20_01843at 1937.421 kb on + strand, within MPMX20_01843at 1937.421 kb on + strand, within MPMX20_01843at 1937.421 kb on + strand, within MPMX20_01843at 1937.428 kb on + strand, within MPMX20_01843at 1937.428 kb on + strand, within MPMX20_01843at 1937.428 kb on + strand, within MPMX20_01843at 1937.429 kb on - strand, within MPMX20_01843at 1937.429 kb on - strand, within MPMX20_01843at 1937.429 kb on - strand, within MPMX20_01843at 1937.436 kb on - strand, within MPMX20_01843at 1937.533 kb on - strand, within MPMX20_01843at 1937.534 kb on - strand, within MPMX20_01843at 1937.605 kb on + strand, within MPMX20_01843at 1937.643 kb on + strand, within MPMX20_01843at 1937.646 kb on - strand, within MPMX20_01843at 1937.726 kb on - strandat 1937.735 kb on + strandat 1937.735 kb on + strandat 1937.737 kb on + strandat 1937.738 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Paenibacillus lautus TBS_090
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1,935,909 + +0.2
1,936,034 + +1.1
1,936,121 + MPMX20_01842 0.15 -1.9
1,936,148 + MPMX20_01842 0.18 -0.0
1,936,170 + MPMX20_01842 0.20 -0.4
1,936,273 - MPMX20_01842 0.33 -3.2
1,936,297 + MPMX20_01842 0.35 -0.4
1,936,305 - MPMX20_01842 0.36 +0.1
1,936,324 - MPMX20_01842 0.38 -1.7
1,936,380 - MPMX20_01842 0.45 -0.1
1,936,466 + MPMX20_01842 0.55 -0.2
1,936,470 - MPMX20_01842 0.56 -0.9
1,936,542 - MPMX20_01842 0.64 -3.2
1,936,590 - MPMX20_01842 0.70 +0.1
1,936,602 + MPMX20_01842 0.71 -1.8
1,936,684 + MPMX20_01842 0.81 +0.1
1,936,686 - MPMX20_01842 0.81 -0.6
1,936,747 - MPMX20_01842 0.88 +3.0
1,936,758 - MPMX20_01842 0.89 -0.3
1,936,762 + MPMX20_01842 0.90 -0.1
1,936,765 + -0.4
1,936,806 - -1.5
1,936,829 - -1.1
1,936,829 - -1.1
1,936,862 + -2.4
1,936,905 + -0.1
1,936,905 + +0.0
1,936,913 - +0.2
1,936,931 - +1.0
1,936,983 - +0.6
1,936,988 - MPMX20_01843 0.10 -0.4
1,936,998 - MPMX20_01843 0.11 -1.9
1,937,066 + MPMX20_01843 0.19 +0.4
1,937,084 - MPMX20_01843 0.21 +0.9
1,937,099 + MPMX20_01843 0.23 +1.1
1,937,127 - MPMX20_01843 0.26 -2.0
1,937,184 - MPMX20_01843 0.32 -1.3
1,937,199 - MPMX20_01843 0.34 +1.1
1,937,234 - MPMX20_01843 0.38 +0.1
1,937,238 + MPMX20_01843 0.39 +1.4
1,937,253 + MPMX20_01843 0.40 -1.6
1,937,261 + MPMX20_01843 0.41 +0.7
1,937,269 - MPMX20_01843 0.42 -2.1
1,937,287 + MPMX20_01843 0.44 +5.8
1,937,295 - MPMX20_01843 0.45 -0.8
1,937,303 - MPMX20_01843 0.46 +0.6
1,937,401 + MPMX20_01843 0.57 -1.0
1,937,421 + MPMX20_01843 0.59 +2.2
1,937,421 + MPMX20_01843 0.59 -0.3
1,937,421 + MPMX20_01843 0.59 +0.6
1,937,428 + MPMX20_01843 0.60 -2.2
1,937,428 + MPMX20_01843 0.60 +1.1
1,937,428 + MPMX20_01843 0.60 +0.5
1,937,429 - MPMX20_01843 0.60 -0.4
1,937,429 - MPMX20_01843 0.60 +0.1
1,937,429 - MPMX20_01843 0.60 -0.5
1,937,436 - MPMX20_01843 0.61 -1.7
1,937,533 - MPMX20_01843 0.72 -3.1
1,937,534 - MPMX20_01843 0.72 -0.2
1,937,605 + MPMX20_01843 0.80 +0.3
1,937,643 + MPMX20_01843 0.84 -0.6
1,937,646 - MPMX20_01843 0.85 +1.9
1,937,726 - -0.1
1,937,735 + +1.1
1,937,735 + -1.8
1,937,737 + +0.8
1,937,738 - +1.3

Or see this region's nucleotide sequence