Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00026

Experiment: TSB plate, 1:1 coculture with Paenibacillus lautus TBS_090

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00025 and MPMX20_00026 are separated by 85 nucleotidesMPMX20_00026 and MPMX20_00027 overlap by 98 nucleotides MPMX20_00025: MPMX20_00025 - HTH-type transcriptional regulator DsdC, at 26,357 to 27,283 _00025 MPMX20_00026: MPMX20_00026 - hypothetical protein, at 27,369 to 28,457 _00026 MPMX20_00027: MPMX20_00027 - Multidrug resistance protein D, at 28,360 to 29,544 _00027 Position (kb) 27 28 29Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 26.429 kb on - strandat 26.476 kb on - strand, within MPMX20_00025at 26.481 kb on + strand, within MPMX20_00025at 26.484 kb on - strand, within MPMX20_00025at 26.510 kb on - strand, within MPMX20_00025at 26.530 kb on - strand, within MPMX20_00025at 26.532 kb on - strand, within MPMX20_00025at 26.554 kb on + strand, within MPMX20_00025at 26.554 kb on + strand, within MPMX20_00025at 26.575 kb on + strand, within MPMX20_00025at 26.578 kb on + strand, within MPMX20_00025at 26.586 kb on - strand, within MPMX20_00025at 26.675 kb on + strand, within MPMX20_00025at 26.701 kb on + strand, within MPMX20_00025at 26.701 kb on + strand, within MPMX20_00025at 26.701 kb on + strand, within MPMX20_00025at 26.701 kb on + strand, within MPMX20_00025at 26.701 kb on + strand, within MPMX20_00025at 26.709 kb on - strand, within MPMX20_00025at 26.709 kb on - strand, within MPMX20_00025at 26.745 kb on - strand, within MPMX20_00025at 26.770 kb on - strand, within MPMX20_00025at 26.790 kb on - strand, within MPMX20_00025at 26.909 kb on + strand, within MPMX20_00025at 26.947 kb on + strand, within MPMX20_00025at 26.971 kb on + strand, within MPMX20_00025at 26.974 kb on - strand, within MPMX20_00025at 27.163 kb on - strand, within MPMX20_00025at 27.199 kb on + strandat 27.199 kb on + strandat 27.200 kb on + strandat 27.225 kb on + strandat 27.259 kb on - strandat 27.354 kb on + strandat 27.399 kb on - strandat 27.401 kb on - strandat 27.480 kb on + strand, within MPMX20_00026at 27.480 kb on + strand, within MPMX20_00026at 27.480 kb on + strand, within MPMX20_00026at 27.488 kb on - strand, within MPMX20_00026at 27.488 kb on - strand, within MPMX20_00026at 27.509 kb on - strand, within MPMX20_00026at 27.554 kb on + strand, within MPMX20_00026at 27.554 kb on + strand, within MPMX20_00026at 27.563 kb on - strand, within MPMX20_00026at 27.563 kb on - strand, within MPMX20_00026at 27.567 kb on + strand, within MPMX20_00026at 27.575 kb on - strand, within MPMX20_00026at 27.575 kb on - strand, within MPMX20_00026at 27.626 kb on + strand, within MPMX20_00026at 27.627 kb on + strand, within MPMX20_00026at 27.764 kb on - strand, within MPMX20_00026at 27.778 kb on + strand, within MPMX20_00026at 27.823 kb on - strand, within MPMX20_00026at 27.823 kb on - strand, within MPMX20_00026at 27.823 kb on - strand, within MPMX20_00026at 27.935 kb on - strand, within MPMX20_00026at 27.937 kb on + strand, within MPMX20_00026at 27.945 kb on - strand, within MPMX20_00026at 28.024 kb on - strand, within MPMX20_00026at 28.062 kb on + strand, within MPMX20_00026at 28.129 kb on + strand, within MPMX20_00026at 28.129 kb on - strand, within MPMX20_00026at 28.312 kb on - strand, within MPMX20_00026at 28.396 kb on - strandat 28.447 kb on + strandat 28.455 kb on - strandat 28.455 kb on - strandat 28.455 kb on - strandat 28.521 kb on - strand, within MPMX20_00027at 28.523 kb on + strand, within MPMX20_00027at 28.523 kb on + strand, within MPMX20_00027at 28.523 kb on + strand, within MPMX20_00027at 28.531 kb on - strand, within MPMX20_00027at 28.531 kb on - strand, within MPMX20_00027at 28.531 kb on - strand, within MPMX20_00027at 28.531 kb on - strand, within MPMX20_00027at 28.613 kb on + strand, within MPMX20_00027at 28.626 kb on - strand, within MPMX20_00027at 28.626 kb on - strand, within MPMX20_00027at 28.628 kb on + strand, within MPMX20_00027at 28.691 kb on + strand, within MPMX20_00027at 28.705 kb on + strand, within MPMX20_00027at 28.713 kb on - strand, within MPMX20_00027at 28.715 kb on + strand, within MPMX20_00027at 28.716 kb on - strand, within MPMX20_00027at 28.717 kb on - strand, within MPMX20_00027at 28.728 kb on + strand, within MPMX20_00027at 28.739 kb on + strand, within MPMX20_00027at 28.792 kb on - strand, within MPMX20_00027at 28.817 kb on + strand, within MPMX20_00027at 28.820 kb on - strand, within MPMX20_00027at 28.827 kb on + strand, within MPMX20_00027at 28.827 kb on + strand, within MPMX20_00027at 28.835 kb on - strand, within MPMX20_00027at 28.838 kb on + strand, within MPMX20_00027at 28.928 kb on + strand, within MPMX20_00027at 28.987 kb on + strand, within MPMX20_00027at 29.024 kb on + strand, within MPMX20_00027at 29.060 kb on + strand, within MPMX20_00027at 29.106 kb on + strand, within MPMX20_00027at 29.106 kb on + strand, within MPMX20_00027at 29.259 kb on + strand, within MPMX20_00027at 29.259 kb on + strand, within MPMX20_00027at 29.259 kb on + strand, within MPMX20_00027at 29.259 kb on + strand, within MPMX20_00027at 29.267 kb on - strand, within MPMX20_00027at 29.267 kb on - strand, within MPMX20_00027at 29.267 kb on - strand, within MPMX20_00027at 29.268 kb on - strand, within MPMX20_00027at 29.354 kb on + strand, within MPMX20_00027at 29.381 kb on - strand, within MPMX20_00027at 29.404 kb on + strand, within MPMX20_00027at 29.404 kb on + strand, within MPMX20_00027at 29.412 kb on - strand, within MPMX20_00027at 29.412 kb on - strand, within MPMX20_00027at 29.435 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Paenibacillus lautus TBS_090
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26,429 - -0.7
26,476 - MPMX20_00025 0.13 +2.1
26,481 + MPMX20_00025 0.13 -0.3
26,484 - MPMX20_00025 0.14 +1.6
26,510 - MPMX20_00025 0.17 -0.5
26,530 - MPMX20_00025 0.19 -0.3
26,532 - MPMX20_00025 0.19 -0.3
26,554 + MPMX20_00025 0.21 +0.7
26,554 + MPMX20_00025 0.21 -1.6
26,575 + MPMX20_00025 0.24 +1.7
26,578 + MPMX20_00025 0.24 +0.2
26,586 - MPMX20_00025 0.25 +0.6
26,675 + MPMX20_00025 0.34 +1.1
26,701 + MPMX20_00025 0.37 +0.1
26,701 + MPMX20_00025 0.37 +2.7
26,701 + MPMX20_00025 0.37 -2.5
26,701 + MPMX20_00025 0.37 -0.6
26,701 + MPMX20_00025 0.37 -0.8
26,709 - MPMX20_00025 0.38 -0.9
26,709 - MPMX20_00025 0.38 +1.5
26,745 - MPMX20_00025 0.42 -2.2
26,770 - MPMX20_00025 0.45 +1.2
26,790 - MPMX20_00025 0.47 +3.4
26,909 + MPMX20_00025 0.60 -0.1
26,947 + MPMX20_00025 0.64 +0.6
26,971 + MPMX20_00025 0.66 +0.3
26,974 - MPMX20_00025 0.67 -0.5
27,163 - MPMX20_00025 0.87 -1.9
27,199 + +0.3
27,199 + -0.1
27,200 + -0.8
27,225 + -0.9
27,259 - -1.9
27,354 + -0.9
27,399 - -2.4
27,401 - -1.5
27,480 + MPMX20_00026 0.10 -1.1
27,480 + MPMX20_00026 0.10 -1.6
27,480 + MPMX20_00026 0.10 +0.5
27,488 - MPMX20_00026 0.11 -0.9
27,488 - MPMX20_00026 0.11 +1.8
27,509 - MPMX20_00026 0.13 -1.2
27,554 + MPMX20_00026 0.17 +0.7
27,554 + MPMX20_00026 0.17 -3.3
27,563 - MPMX20_00026 0.18 -1.0
27,563 - MPMX20_00026 0.18 +1.2
27,567 + MPMX20_00026 0.18 -1.5
27,575 - MPMX20_00026 0.19 +0.3
27,575 - MPMX20_00026 0.19 +2.3
27,626 + MPMX20_00026 0.24 -0.7
27,627 + MPMX20_00026 0.24 +1.0
27,764 - MPMX20_00026 0.36 +0.7
27,778 + MPMX20_00026 0.38 -2.5
27,823 - MPMX20_00026 0.42 +0.7
27,823 - MPMX20_00026 0.42 +0.7
27,823 - MPMX20_00026 0.42 +1.4
27,935 - MPMX20_00026 0.52 -2.5
27,937 + MPMX20_00026 0.52 +0.6
27,945 - MPMX20_00026 0.53 +1.3
28,024 - MPMX20_00026 0.60 -0.1
28,062 + MPMX20_00026 0.64 +0.4
28,129 + MPMX20_00026 0.70 -2.8
28,129 - MPMX20_00026 0.70 +0.3
28,312 - MPMX20_00026 0.87 -0.7
28,396 - -1.6
28,447 + +1.7
28,455 - -1.5
28,455 - +0.7
28,455 - -2.9
28,521 - MPMX20_00027 0.14 -2.1
28,523 + MPMX20_00027 0.14 -1.4
28,523 + MPMX20_00027 0.14 +0.1
28,523 + MPMX20_00027 0.14 -0.3
28,531 - MPMX20_00027 0.14 -0.1
28,531 - MPMX20_00027 0.14 +0.1
28,531 - MPMX20_00027 0.14 -1.1
28,531 - MPMX20_00027 0.14 +1.8
28,613 + MPMX20_00027 0.21 -2.1
28,626 - MPMX20_00027 0.22 -1.6
28,626 - MPMX20_00027 0.22 -1.6
28,628 + MPMX20_00027 0.23 -0.3
28,691 + MPMX20_00027 0.28 +8.5
28,705 + MPMX20_00027 0.29 -2.7
28,713 - MPMX20_00027 0.30 -0.1
28,715 + MPMX20_00027 0.30 -0.3
28,716 - MPMX20_00027 0.30 -0.1
28,717 - MPMX20_00027 0.30 +0.7
28,728 + MPMX20_00027 0.31 -1.9
28,739 + MPMX20_00027 0.32 +1.1
28,792 - MPMX20_00027 0.36 -0.4
28,817 + MPMX20_00027 0.39 +0.1
28,820 - MPMX20_00027 0.39 +0.7
28,827 + MPMX20_00027 0.39 -2.0
28,827 + MPMX20_00027 0.39 +0.6
28,835 - MPMX20_00027 0.40 +0.3
28,838 + MPMX20_00027 0.40 +1.4
28,928 + MPMX20_00027 0.48 -2.0
28,987 + MPMX20_00027 0.53 -0.1
29,024 + MPMX20_00027 0.56 +2.4
29,060 + MPMX20_00027 0.59 -0.3
29,106 + MPMX20_00027 0.63 -0.5
29,106 + MPMX20_00027 0.63 +0.1
29,259 + MPMX20_00027 0.76 -0.8
29,259 + MPMX20_00027 0.76 +3.0
29,259 + MPMX20_00027 0.76 +0.5
29,259 + MPMX20_00027 0.76 +1.4
29,267 - MPMX20_00027 0.77 +2.7
29,267 - MPMX20_00027 0.77 +3.4
29,267 - MPMX20_00027 0.77 -0.3
29,268 - MPMX20_00027 0.77 -1.6
29,354 + MPMX20_00027 0.84 +4.0
29,381 - MPMX20_00027 0.86 -0.3
29,404 + MPMX20_00027 0.88 -1.3
29,404 + MPMX20_00027 0.88 -2.5
29,412 - MPMX20_00027 0.89 +0.5
29,412 - MPMX20_00027 0.89 -1.7
29,435 - -1.6

Or see this region's nucleotide sequence