Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04332

Experiment: 1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04330 and MPMX20_04331 are separated by 1 nucleotidesMPMX20_04331 and MPMX20_04332 overlap by 4 nucleotidesMPMX20_04332 and MPMX20_04333 overlap by 4 nucleotidesMPMX20_04333 and MPMX20_04334 are separated by 46 nucleotides MPMX20_04330: MPMX20_04330 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 4,524,689 to 4,525,402 _04330 MPMX20_04331: MPMX20_04331 - Lipopolysaccharide export system ATP-binding protein LptB, at 4,525,404 to 4,526,171 _04331 MPMX20_04332: MPMX20_04332 - hypothetical protein, at 4,526,168 to 4,527,445 _04332 MPMX20_04333: MPMX20_04333 - High-affinity branched-chain amino acid transport system permease protein LivH, at 4,527,442 to 4,528,368 _04333 MPMX20_04334: MPMX20_04334 - Leucine-specific-binding protein, at 4,528,415 to 4,529,524 _04334 Position (kb) 4526 4527 4528Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4525.254 kb on + strand, within MPMX20_04330at 4525.254 kb on + strand, within MPMX20_04330at 4525.262 kb on - strand, within MPMX20_04330at 4525.295 kb on - strand, within MPMX20_04330at 4525.365 kb on + strandat 4525.373 kb on - strandat 4525.413 kb on + strandat 4525.418 kb on + strandat 4525.441 kb on - strandat 4525.465 kb on + strandat 4525.505 kb on + strand, within MPMX20_04331at 4525.526 kb on + strand, within MPMX20_04331at 4525.534 kb on - strand, within MPMX20_04331at 4525.558 kb on - strand, within MPMX20_04331at 4525.568 kb on - strand, within MPMX20_04331at 4525.568 kb on - strand, within MPMX20_04331at 4525.585 kb on - strand, within MPMX20_04331at 4525.601 kb on + strand, within MPMX20_04331at 4525.617 kb on + strand, within MPMX20_04331at 4525.700 kb on - strand, within MPMX20_04331at 4525.710 kb on - strand, within MPMX20_04331at 4525.735 kb on + strand, within MPMX20_04331at 4525.754 kb on + strand, within MPMX20_04331at 4525.831 kb on - strand, within MPMX20_04331at 4525.927 kb on + strand, within MPMX20_04331at 4525.932 kb on + strand, within MPMX20_04331at 4525.935 kb on - strand, within MPMX20_04331at 4525.990 kb on - strand, within MPMX20_04331at 4525.990 kb on - strand, within MPMX20_04331at 4526.166 kb on + strandat 4526.166 kb on + strandat 4526.174 kb on - strandat 4526.189 kb on - strandat 4526.209 kb on + strandat 4526.278 kb on + strandat 4526.286 kb on - strandat 4526.314 kb on + strand, within MPMX20_04332at 4526.425 kb on + strand, within MPMX20_04332at 4526.441 kb on + strand, within MPMX20_04332at 4526.444 kb on - strand, within MPMX20_04332at 4526.449 kb on - strand, within MPMX20_04332at 4526.449 kb on - strand, within MPMX20_04332at 4526.532 kb on - strand, within MPMX20_04332at 4526.561 kb on + strand, within MPMX20_04332at 4526.590 kb on - strand, within MPMX20_04332at 4526.600 kb on - strand, within MPMX20_04332at 4526.610 kb on + strand, within MPMX20_04332at 4526.652 kb on - strand, within MPMX20_04332at 4526.736 kb on + strand, within MPMX20_04332at 4526.746 kb on - strand, within MPMX20_04332at 4526.776 kb on + strand, within MPMX20_04332at 4526.784 kb on - strand, within MPMX20_04332at 4526.803 kb on + strand, within MPMX20_04332at 4526.854 kb on - strand, within MPMX20_04332at 4526.854 kb on - strand, within MPMX20_04332at 4526.874 kb on - strand, within MPMX20_04332at 4526.990 kb on + strand, within MPMX20_04332at 4526.990 kb on + strand, within MPMX20_04332at 4526.991 kb on + strand, within MPMX20_04332at 4526.998 kb on - strand, within MPMX20_04332at 4526.998 kb on - strand, within MPMX20_04332at 4526.999 kb on - strand, within MPMX20_04332at 4527.018 kb on + strand, within MPMX20_04332at 4527.092 kb on + strand, within MPMX20_04332at 4527.097 kb on + strand, within MPMX20_04332at 4527.158 kb on - strand, within MPMX20_04332at 4527.158 kb on - strand, within MPMX20_04332at 4527.158 kb on - strand, within MPMX20_04332at 4527.197 kb on + strand, within MPMX20_04332at 4527.265 kb on - strand, within MPMX20_04332at 4527.281 kb on + strand, within MPMX20_04332at 4527.343 kb on + strandat 4527.351 kb on - strandat 4527.359 kb on - strandat 4527.406 kb on - strandat 4527.416 kb on - strandat 4527.456 kb on + strandat 4527.466 kb on + strandat 4527.474 kb on - strandat 4527.474 kb on - strandat 4527.474 kb on - strandat 4527.505 kb on + strandat 4527.527 kb on + strandat 4527.559 kb on - strand, within MPMX20_04333at 4527.628 kb on - strand, within MPMX20_04333at 4527.630 kb on - strand, within MPMX20_04333at 4527.676 kb on - strand, within MPMX20_04333at 4527.710 kb on + strand, within MPMX20_04333at 4527.745 kb on + strand, within MPMX20_04333at 4527.745 kb on + strand, within MPMX20_04333at 4527.753 kb on - strand, within MPMX20_04333at 4527.753 kb on - strand, within MPMX20_04333at 4527.753 kb on - strand, within MPMX20_04333at 4527.793 kb on + strand, within MPMX20_04333at 4527.801 kb on - strand, within MPMX20_04333at 4527.885 kb on - strand, within MPMX20_04333at 4527.885 kb on - strand, within MPMX20_04333at 4527.961 kb on - strand, within MPMX20_04333at 4527.961 kb on - strand, within MPMX20_04333at 4527.961 kb on - strand, within MPMX20_04333at 4528.050 kb on - strand, within MPMX20_04333at 4528.233 kb on - strand, within MPMX20_04333at 4528.234 kb on - strand, within MPMX20_04333at 4528.247 kb on + strand, within MPMX20_04333at 4528.302 kb on + strandat 4528.325 kb on - strandat 4528.325 kb on - strandat 4528.325 kb on - strandat 4528.359 kb on + strandat 4528.359 kb on + strandat 4528.359 kb on + strandat 4528.377 kb on - strandat 4528.379 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090
remove
4,525,254 + MPMX20_04330 0.79 -1.9
4,525,254 + MPMX20_04330 0.79 -1.6
4,525,262 - MPMX20_04330 0.80 -1.2
4,525,295 - MPMX20_04330 0.85 -1.7
4,525,365 + -0.9
4,525,373 - -2.6
4,525,413 + +1.1
4,525,418 + +0.9
4,525,441 - +0.3
4,525,465 + -0.9
4,525,505 + MPMX20_04331 0.13 -0.2
4,525,526 + MPMX20_04331 0.16 -1.3
4,525,534 - MPMX20_04331 0.17 -0.4
4,525,558 - MPMX20_04331 0.20 +0.5
4,525,568 - MPMX20_04331 0.21 -0.4
4,525,568 - MPMX20_04331 0.21 -0.1
4,525,585 - MPMX20_04331 0.24 -0.7
4,525,601 + MPMX20_04331 0.26 -2.2
4,525,617 + MPMX20_04331 0.28 -1.8
4,525,700 - MPMX20_04331 0.39 -2.0
4,525,710 - MPMX20_04331 0.40 +0.7
4,525,735 + MPMX20_04331 0.43 -0.6
4,525,754 + MPMX20_04331 0.46 -1.7
4,525,831 - MPMX20_04331 0.56 -1.9
4,525,927 + MPMX20_04331 0.68 -0.3
4,525,932 + MPMX20_04331 0.69 +0.8
4,525,935 - MPMX20_04331 0.69 +0.2
4,525,990 - MPMX20_04331 0.76 +0.6
4,525,990 - MPMX20_04331 0.76 -0.2
4,526,166 + -0.4
4,526,166 + -1.0
4,526,174 - -1.6
4,526,189 - +3.4
4,526,209 + -2.2
4,526,278 + -1.8
4,526,286 - -0.3
4,526,314 + MPMX20_04332 0.11 +0.5
4,526,425 + MPMX20_04332 0.20 -2.3
4,526,441 + MPMX20_04332 0.21 -0.4
4,526,444 - MPMX20_04332 0.22 -0.7
4,526,449 - MPMX20_04332 0.22 -0.6
4,526,449 - MPMX20_04332 0.22 -0.1
4,526,532 - MPMX20_04332 0.28 -1.5
4,526,561 + MPMX20_04332 0.31 -0.7
4,526,590 - MPMX20_04332 0.33 -0.9
4,526,600 - MPMX20_04332 0.34 +0.6
4,526,610 + MPMX20_04332 0.35 +0.1
4,526,652 - MPMX20_04332 0.38 -0.4
4,526,736 + MPMX20_04332 0.44 -0.2
4,526,746 - MPMX20_04332 0.45 +1.0
4,526,776 + MPMX20_04332 0.48 +0.2
4,526,784 - MPMX20_04332 0.48 -0.8
4,526,803 + MPMX20_04332 0.50 +0.2
4,526,854 - MPMX20_04332 0.54 +0.4
4,526,854 - MPMX20_04332 0.54 -1.4
4,526,874 - MPMX20_04332 0.55 -0.9
4,526,990 + MPMX20_04332 0.64 +0.9
4,526,990 + MPMX20_04332 0.64 +0.2
4,526,991 + MPMX20_04332 0.64 +2.9
4,526,998 - MPMX20_04332 0.65 +0.6
4,526,998 - MPMX20_04332 0.65 -2.8
4,526,999 - MPMX20_04332 0.65 +0.8
4,527,018 + MPMX20_04332 0.67 +0.8
4,527,092 + MPMX20_04332 0.72 -0.5
4,527,097 + MPMX20_04332 0.73 +1.8
4,527,158 - MPMX20_04332 0.77 -0.0
4,527,158 - MPMX20_04332 0.77 +0.2
4,527,158 - MPMX20_04332 0.77 +0.2
4,527,197 + MPMX20_04332 0.81 -0.9
4,527,265 - MPMX20_04332 0.86 -2.3
4,527,281 + MPMX20_04332 0.87 -0.0
4,527,343 + +1.8
4,527,351 - +1.2
4,527,359 - -0.8
4,527,406 - +1.1
4,527,416 - -0.3
4,527,456 + +1.8
4,527,466 + +2.3
4,527,474 - +0.5
4,527,474 - +0.2
4,527,474 - +1.3
4,527,505 + +0.2
4,527,527 + -0.2
4,527,559 - MPMX20_04333 0.13 +1.8
4,527,628 - MPMX20_04333 0.20 -0.8
4,527,630 - MPMX20_04333 0.20 -3.5
4,527,676 - MPMX20_04333 0.25 +1.3
4,527,710 + MPMX20_04333 0.29 -2.4
4,527,745 + MPMX20_04333 0.33 -0.1
4,527,745 + MPMX20_04333 0.33 +1.1
4,527,753 - MPMX20_04333 0.34 -0.5
4,527,753 - MPMX20_04333 0.34 +1.3
4,527,753 - MPMX20_04333 0.34 -1.3
4,527,793 + MPMX20_04333 0.38 +0.8
4,527,801 - MPMX20_04333 0.39 +0.2
4,527,885 - MPMX20_04333 0.48 +0.2
4,527,885 - MPMX20_04333 0.48 -0.8
4,527,961 - MPMX20_04333 0.56 +0.0
4,527,961 - MPMX20_04333 0.56 -0.8
4,527,961 - MPMX20_04333 0.56 +0.9
4,528,050 - MPMX20_04333 0.66 -2.2
4,528,233 - MPMX20_04333 0.85 +3.6
4,528,234 - MPMX20_04333 0.85 +0.1
4,528,247 + MPMX20_04333 0.87 +1.3
4,528,302 + +0.3
4,528,325 - -1.0
4,528,325 - -0.4
4,528,325 - -2.2
4,528,359 + -2.4
4,528,359 + +1.1
4,528,359 + -0.4
4,528,377 - +1.5
4,528,379 + -0.2

Or see this region's nucleotide sequence