Experiment: 1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04330 and MPMX20_04331 are separated by 1 nucleotides MPMX20_04331 and MPMX20_04332 overlap by 4 nucleotides MPMX20_04332 and MPMX20_04333 overlap by 4 nucleotides MPMX20_04333 and MPMX20_04334 are separated by 46 nucleotides
MPMX20_04330: MPMX20_04330 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 4,524,689 to 4,525,402
_04330
MPMX20_04331: MPMX20_04331 - Lipopolysaccharide export system ATP-binding protein LptB, at 4,525,404 to 4,526,171
_04331
MPMX20_04332: MPMX20_04332 - hypothetical protein, at 4,526,168 to 4,527,445
_04332
MPMX20_04333: MPMX20_04333 - High-affinity branched-chain amino acid transport system permease protein LivH, at 4,527,442 to 4,528,368
_04333
MPMX20_04334: MPMX20_04334 - Leucine-specific-binding protein, at 4,528,415 to 4,529,524
_04334
Position (kb)
4526
4527
4528 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4525.254 kb on + strand, within MPMX20_04330 at 4525.254 kb on + strand, within MPMX20_04330 at 4525.262 kb on - strand, within MPMX20_04330 at 4525.295 kb on - strand, within MPMX20_04330 at 4525.365 kb on + strand at 4525.373 kb on - strand at 4525.413 kb on + strand at 4525.418 kb on + strand at 4525.441 kb on - strand at 4525.465 kb on + strand at 4525.505 kb on + strand, within MPMX20_04331 at 4525.526 kb on + strand, within MPMX20_04331 at 4525.534 kb on - strand, within MPMX20_04331 at 4525.558 kb on - strand, within MPMX20_04331 at 4525.568 kb on - strand, within MPMX20_04331 at 4525.568 kb on - strand, within MPMX20_04331 at 4525.585 kb on - strand, within MPMX20_04331 at 4525.601 kb on + strand, within MPMX20_04331 at 4525.617 kb on + strand, within MPMX20_04331 at 4525.700 kb on - strand, within MPMX20_04331 at 4525.710 kb on - strand, within MPMX20_04331 at 4525.735 kb on + strand, within MPMX20_04331 at 4525.754 kb on + strand, within MPMX20_04331 at 4525.831 kb on - strand, within MPMX20_04331 at 4525.927 kb on + strand, within MPMX20_04331 at 4525.932 kb on + strand, within MPMX20_04331 at 4525.935 kb on - strand, within MPMX20_04331 at 4525.990 kb on - strand, within MPMX20_04331 at 4525.990 kb on - strand, within MPMX20_04331 at 4526.166 kb on + strand at 4526.166 kb on + strand at 4526.174 kb on - strand at 4526.189 kb on - strand at 4526.209 kb on + strand at 4526.278 kb on + strand at 4526.286 kb on - strand at 4526.314 kb on + strand, within MPMX20_04332 at 4526.425 kb on + strand, within MPMX20_04332 at 4526.441 kb on + strand, within MPMX20_04332 at 4526.444 kb on - strand, within MPMX20_04332 at 4526.449 kb on - strand, within MPMX20_04332 at 4526.449 kb on - strand, within MPMX20_04332 at 4526.532 kb on - strand, within MPMX20_04332 at 4526.561 kb on + strand, within MPMX20_04332 at 4526.590 kb on - strand, within MPMX20_04332 at 4526.600 kb on - strand, within MPMX20_04332 at 4526.610 kb on + strand, within MPMX20_04332 at 4526.652 kb on - strand, within MPMX20_04332 at 4526.736 kb on + strand, within MPMX20_04332 at 4526.746 kb on - strand, within MPMX20_04332 at 4526.776 kb on + strand, within MPMX20_04332 at 4526.784 kb on - strand, within MPMX20_04332 at 4526.803 kb on + strand, within MPMX20_04332 at 4526.854 kb on - strand, within MPMX20_04332 at 4526.854 kb on - strand, within MPMX20_04332 at 4526.874 kb on - strand, within MPMX20_04332 at 4526.990 kb on + strand, within MPMX20_04332 at 4526.990 kb on + strand, within MPMX20_04332 at 4526.991 kb on + strand, within MPMX20_04332 at 4526.998 kb on - strand, within MPMX20_04332 at 4526.998 kb on - strand, within MPMX20_04332 at 4526.999 kb on - strand, within MPMX20_04332 at 4527.018 kb on + strand, within MPMX20_04332 at 4527.092 kb on + strand, within MPMX20_04332 at 4527.097 kb on + strand, within MPMX20_04332 at 4527.158 kb on - strand, within MPMX20_04332 at 4527.158 kb on - strand, within MPMX20_04332 at 4527.158 kb on - strand, within MPMX20_04332 at 4527.197 kb on + strand, within MPMX20_04332 at 4527.265 kb on - strand, within MPMX20_04332 at 4527.281 kb on + strand, within MPMX20_04332 at 4527.343 kb on + strand at 4527.351 kb on - strand at 4527.359 kb on - strand at 4527.406 kb on - strand at 4527.416 kb on - strand at 4527.456 kb on + strand at 4527.466 kb on + strand at 4527.474 kb on - strand at 4527.474 kb on - strand at 4527.474 kb on - strand at 4527.505 kb on + strand at 4527.527 kb on + strand at 4527.559 kb on - strand, within MPMX20_04333 at 4527.628 kb on - strand, within MPMX20_04333 at 4527.630 kb on - strand, within MPMX20_04333 at 4527.676 kb on - strand, within MPMX20_04333 at 4527.710 kb on + strand, within MPMX20_04333 at 4527.745 kb on + strand, within MPMX20_04333 at 4527.745 kb on + strand, within MPMX20_04333 at 4527.753 kb on - strand, within MPMX20_04333 at 4527.753 kb on - strand, within MPMX20_04333 at 4527.753 kb on - strand, within MPMX20_04333 at 4527.793 kb on + strand, within MPMX20_04333 at 4527.801 kb on - strand, within MPMX20_04333 at 4527.885 kb on - strand, within MPMX20_04333 at 4527.885 kb on - strand, within MPMX20_04333 at 4527.961 kb on - strand, within MPMX20_04333 at 4527.961 kb on - strand, within MPMX20_04333 at 4527.961 kb on - strand, within MPMX20_04333 at 4528.050 kb on - strand, within MPMX20_04333 at 4528.233 kb on - strand, within MPMX20_04333 at 4528.234 kb on - strand, within MPMX20_04333 at 4528.247 kb on + strand, within MPMX20_04333 at 4528.302 kb on + strand at 4528.325 kb on - strand at 4528.325 kb on - strand at 4528.325 kb on - strand at 4528.359 kb on + strand at 4528.359 kb on + strand at 4528.359 kb on + strand at 4528.377 kb on - strand at 4528.379 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090 remove 4,525,254 + MPMX20_04330 0.79 -1.9 4,525,254 + MPMX20_04330 0.79 -1.6 4,525,262 - MPMX20_04330 0.80 -1.2 4,525,295 - MPMX20_04330 0.85 -1.7 4,525,365 + -0.9 4,525,373 - -2.6 4,525,413 + +1.1 4,525,418 + +0.9 4,525,441 - +0.3 4,525,465 + -0.9 4,525,505 + MPMX20_04331 0.13 -0.2 4,525,526 + MPMX20_04331 0.16 -1.3 4,525,534 - MPMX20_04331 0.17 -0.4 4,525,558 - MPMX20_04331 0.20 +0.5 4,525,568 - MPMX20_04331 0.21 -0.4 4,525,568 - MPMX20_04331 0.21 -0.1 4,525,585 - MPMX20_04331 0.24 -0.7 4,525,601 + MPMX20_04331 0.26 -2.2 4,525,617 + MPMX20_04331 0.28 -1.8 4,525,700 - MPMX20_04331 0.39 -2.0 4,525,710 - MPMX20_04331 0.40 +0.7 4,525,735 + MPMX20_04331 0.43 -0.6 4,525,754 + MPMX20_04331 0.46 -1.7 4,525,831 - MPMX20_04331 0.56 -1.9 4,525,927 + MPMX20_04331 0.68 -0.3 4,525,932 + MPMX20_04331 0.69 +0.8 4,525,935 - MPMX20_04331 0.69 +0.2 4,525,990 - MPMX20_04331 0.76 +0.6 4,525,990 - MPMX20_04331 0.76 -0.2 4,526,166 + -0.4 4,526,166 + -1.0 4,526,174 - -1.6 4,526,189 - +3.4 4,526,209 + -2.2 4,526,278 + -1.8 4,526,286 - -0.3 4,526,314 + MPMX20_04332 0.11 +0.5 4,526,425 + MPMX20_04332 0.20 -2.3 4,526,441 + MPMX20_04332 0.21 -0.4 4,526,444 - MPMX20_04332 0.22 -0.7 4,526,449 - MPMX20_04332 0.22 -0.6 4,526,449 - MPMX20_04332 0.22 -0.1 4,526,532 - MPMX20_04332 0.28 -1.5 4,526,561 + MPMX20_04332 0.31 -0.7 4,526,590 - MPMX20_04332 0.33 -0.9 4,526,600 - MPMX20_04332 0.34 +0.6 4,526,610 + MPMX20_04332 0.35 +0.1 4,526,652 - MPMX20_04332 0.38 -0.4 4,526,736 + MPMX20_04332 0.44 -0.2 4,526,746 - MPMX20_04332 0.45 +1.0 4,526,776 + MPMX20_04332 0.48 +0.2 4,526,784 - MPMX20_04332 0.48 -0.8 4,526,803 + MPMX20_04332 0.50 +0.2 4,526,854 - MPMX20_04332 0.54 +0.4 4,526,854 - MPMX20_04332 0.54 -1.4 4,526,874 - MPMX20_04332 0.55 -0.9 4,526,990 + MPMX20_04332 0.64 +0.9 4,526,990 + MPMX20_04332 0.64 +0.2 4,526,991 + MPMX20_04332 0.64 +2.9 4,526,998 - MPMX20_04332 0.65 +0.6 4,526,998 - MPMX20_04332 0.65 -2.8 4,526,999 - MPMX20_04332 0.65 +0.8 4,527,018 + MPMX20_04332 0.67 +0.8 4,527,092 + MPMX20_04332 0.72 -0.5 4,527,097 + MPMX20_04332 0.73 +1.8 4,527,158 - MPMX20_04332 0.77 -0.0 4,527,158 - MPMX20_04332 0.77 +0.2 4,527,158 - MPMX20_04332 0.77 +0.2 4,527,197 + MPMX20_04332 0.81 -0.9 4,527,265 - MPMX20_04332 0.86 -2.3 4,527,281 + MPMX20_04332 0.87 -0.0 4,527,343 + +1.8 4,527,351 - +1.2 4,527,359 - -0.8 4,527,406 - +1.1 4,527,416 - -0.3 4,527,456 + +1.8 4,527,466 + +2.3 4,527,474 - +0.5 4,527,474 - +0.2 4,527,474 - +1.3 4,527,505 + +0.2 4,527,527 + -0.2 4,527,559 - MPMX20_04333 0.13 +1.8 4,527,628 - MPMX20_04333 0.20 -0.8 4,527,630 - MPMX20_04333 0.20 -3.5 4,527,676 - MPMX20_04333 0.25 +1.3 4,527,710 + MPMX20_04333 0.29 -2.4 4,527,745 + MPMX20_04333 0.33 -0.1 4,527,745 + MPMX20_04333 0.33 +1.1 4,527,753 - MPMX20_04333 0.34 -0.5 4,527,753 - MPMX20_04333 0.34 +1.3 4,527,753 - MPMX20_04333 0.34 -1.3 4,527,793 + MPMX20_04333 0.38 +0.8 4,527,801 - MPMX20_04333 0.39 +0.2 4,527,885 - MPMX20_04333 0.48 +0.2 4,527,885 - MPMX20_04333 0.48 -0.8 4,527,961 - MPMX20_04333 0.56 +0.0 4,527,961 - MPMX20_04333 0.56 -0.8 4,527,961 - MPMX20_04333 0.56 +0.9 4,528,050 - MPMX20_04333 0.66 -2.2 4,528,233 - MPMX20_04333 0.85 +3.6 4,528,234 - MPMX20_04333 0.85 +0.1 4,528,247 + MPMX20_04333 0.87 +1.3 4,528,302 + +0.3 4,528,325 - -1.0 4,528,325 - -0.4 4,528,325 - -2.2 4,528,359 + -2.4 4,528,359 + +1.1 4,528,359 + -0.4 4,528,377 - +1.5 4,528,379 + -0.2
Or see this region's nucleotide sequence