Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04459 and MPMX20_04460 are separated by 161 nucleotides MPMX20_04460 and MPMX20_04461 are separated by 51 nucleotides MPMX20_04461 and MPMX20_04462 are separated by 42 nucleotides
MPMX20_04459: MPMX20_04459 - Phospholipase A1, at 4,662,792 to 4,663,661
_04459
MPMX20_04460: MPMX20_04460 - hypothetical protein, at 4,663,823 to 4,664,290
_04460
MPMX20_04461: MPMX20_04461 - Protein RarD, at 4,664,342 to 4,665,238
_04461
MPMX20_04462: MPMX20_04462 - Magnesium transport protein CorA, at 4,665,281 to 4,666,231
_04462
Position (kb)
4663
4664
4665 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4662.824 kb on - strand at 4662.824 kb on - strand at 4662.829 kb on - strand at 4662.829 kb on - strand at 4662.829 kb on - strand at 4662.829 kb on - strand at 4662.863 kb on + strand at 4662.882 kb on - strand, within MPMX20_04459 at 4662.894 kb on - strand, within MPMX20_04459 at 4662.929 kb on + strand, within MPMX20_04459 at 4662.947 kb on - strand, within MPMX20_04459 at 4662.960 kb on + strand, within MPMX20_04459 at 4662.960 kb on + strand, within MPMX20_04459 at 4662.988 kb on + strand, within MPMX20_04459 at 4663.003 kb on - strand, within MPMX20_04459 at 4663.006 kb on + strand, within MPMX20_04459 at 4663.024 kb on + strand, within MPMX20_04459 at 4663.024 kb on + strand, within MPMX20_04459 at 4663.024 kb on - strand, within MPMX20_04459 at 4663.024 kb on - strand, within MPMX20_04459 at 4663.058 kb on - strand, within MPMX20_04459 at 4663.075 kb on - strand, within MPMX20_04459 at 4663.075 kb on - strand, within MPMX20_04459 at 4663.118 kb on + strand, within MPMX20_04459 at 4663.141 kb on - strand, within MPMX20_04459 at 4663.153 kb on + strand, within MPMX20_04459 at 4663.161 kb on - strand, within MPMX20_04459 at 4663.189 kb on + strand, within MPMX20_04459 at 4663.198 kb on - strand, within MPMX20_04459 at 4663.198 kb on - strand, within MPMX20_04459 at 4663.198 kb on - strand, within MPMX20_04459 at 4663.248 kb on + strand, within MPMX20_04459 at 4663.384 kb on + strand, within MPMX20_04459 at 4663.438 kb on - strand, within MPMX20_04459 at 4663.549 kb on + strand, within MPMX20_04459 at 4663.552 kb on - strand, within MPMX20_04459 at 4663.562 kb on - strand, within MPMX20_04459 at 4663.602 kb on + strand at 4663.610 kb on - strand at 4663.612 kb on + strand at 4663.612 kb on + strand at 4663.617 kb on + strand at 4663.620 kb on - strand at 4663.644 kb on + strand at 4663.644 kb on + strand at 4663.644 kb on + strand at 4663.644 kb on + strand at 4663.647 kb on - strand at 4663.647 kb on - strand at 4663.652 kb on - strand at 4663.652 kb on - strand at 4663.652 kb on - strand at 4663.652 kb on - strand at 4663.652 kb on - strand at 4663.667 kb on + strand at 4663.667 kb on + strand at 4663.667 kb on - strand at 4663.682 kb on + strand at 4663.891 kb on + strand, within MPMX20_04460 at 4663.897 kb on - strand, within MPMX20_04460 at 4663.943 kb on - strand, within MPMX20_04460 at 4663.980 kb on + strand, within MPMX20_04460 at 4663.988 kb on - strand, within MPMX20_04460 at 4664.016 kb on + strand, within MPMX20_04460 at 4664.047 kb on - strand, within MPMX20_04460 at 4664.147 kb on - strand, within MPMX20_04460 at 4664.192 kb on - strand, within MPMX20_04460 at 4664.208 kb on + strand, within MPMX20_04460 at 4664.238 kb on + strand, within MPMX20_04460 at 4664.243 kb on + strand, within MPMX20_04460 at 4664.248 kb on + strand at 4664.248 kb on + strand at 4664.248 kb on + strand at 4664.248 kb on + strand at 4664.248 kb on + strand at 4664.248 kb on + strand at 4664.256 kb on - strand at 4664.256 kb on - strand at 4664.256 kb on - strand at 4664.275 kb on - strand at 4664.282 kb on - strand at 4664.365 kb on + strand at 4664.380 kb on - strand at 4664.380 kb on - strand at 4664.387 kb on - strand at 4664.455 kb on - strand, within MPMX20_04461 at 4664.503 kb on - strand, within MPMX20_04461 at 4664.511 kb on + strand, within MPMX20_04461 at 4664.513 kb on - strand, within MPMX20_04461 at 4664.556 kb on + strand, within MPMX20_04461 at 4664.572 kb on + strand, within MPMX20_04461 at 4664.584 kb on + strand, within MPMX20_04461 at 4664.614 kb on - strand, within MPMX20_04461 at 4664.614 kb on - strand, within MPMX20_04461 at 4664.638 kb on + strand, within MPMX20_04461 at 4664.643 kb on + strand, within MPMX20_04461 at 4664.643 kb on + strand, within MPMX20_04461 at 4664.674 kb on + strand, within MPMX20_04461 at 4664.679 kb on + strand, within MPMX20_04461 at 4664.679 kb on + strand, within MPMX20_04461 at 4664.679 kb on + strand, within MPMX20_04461 at 4664.687 kb on - strand, within MPMX20_04461 at 4664.692 kb on - strand, within MPMX20_04461 at 4664.735 kb on + strand, within MPMX20_04461 at 4664.765 kb on - strand, within MPMX20_04461 at 4664.779 kb on + strand, within MPMX20_04461 at 4664.801 kb on + strand, within MPMX20_04461 at 4664.987 kb on - strand, within MPMX20_04461 at 4664.997 kb on - strand, within MPMX20_04461 at 4665.025 kb on + strand, within MPMX20_04461 at 4665.025 kb on + strand, within MPMX20_04461 at 4665.084 kb on + strand, within MPMX20_04461 at 4665.209 kb on + strand at 4665.271 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2 remove 4,662,824 - +2.9 4,662,824 - +0.6 4,662,829 - -0.3 4,662,829 - -1.2 4,662,829 - -1.7 4,662,829 - +0.5 4,662,863 + -0.1 4,662,882 - MPMX20_04459 0.10 -2.9 4,662,894 - MPMX20_04459 0.12 -0.9 4,662,929 + MPMX20_04459 0.16 +1.2 4,662,947 - MPMX20_04459 0.18 -2.8 4,662,960 + MPMX20_04459 0.19 +0.6 4,662,960 + MPMX20_04459 0.19 -2.4 4,662,988 + MPMX20_04459 0.23 -2.6 4,663,003 - MPMX20_04459 0.24 -1.0 4,663,006 + MPMX20_04459 0.25 -0.1 4,663,024 + MPMX20_04459 0.27 -0.1 4,663,024 + MPMX20_04459 0.27 -0.1 4,663,024 - MPMX20_04459 0.27 +2.2 4,663,024 - MPMX20_04459 0.27 +2.6 4,663,058 - MPMX20_04459 0.31 -1.0 4,663,075 - MPMX20_04459 0.33 -0.1 4,663,075 - MPMX20_04459 0.33 -1.7 4,663,118 + MPMX20_04459 0.37 -1.2 4,663,141 - MPMX20_04459 0.40 -2.7 4,663,153 + MPMX20_04459 0.41 -0.5 4,663,161 - MPMX20_04459 0.42 +0.3 4,663,189 + MPMX20_04459 0.46 -2.5 4,663,198 - MPMX20_04459 0.47 -1.9 4,663,198 - MPMX20_04459 0.47 -1.1 4,663,198 - MPMX20_04459 0.47 -2.5 4,663,248 + MPMX20_04459 0.52 -0.5 4,663,384 + MPMX20_04459 0.68 -0.5 4,663,438 - MPMX20_04459 0.74 -2.8 4,663,549 + MPMX20_04459 0.87 +0.4 4,663,552 - MPMX20_04459 0.87 -1.7 4,663,562 - MPMX20_04459 0.89 +0.5 4,663,602 + -2.5 4,663,610 - -3.3 4,663,612 + +1.2 4,663,612 + -1.9 4,663,617 + +1.8 4,663,620 - -0.3 4,663,644 + +1.2 4,663,644 + -0.6 4,663,644 + -2.7 4,663,644 + -4.2 4,663,647 - -0.6 4,663,647 - -0.8 4,663,652 - -1.7 4,663,652 - -0.4 4,663,652 - -0.3 4,663,652 - -1.4 4,663,652 - +2.2 4,663,667 + +0.2 4,663,667 + -0.1 4,663,667 - +1.2 4,663,682 + -1.0 4,663,891 + MPMX20_04460 0.15 -2.1 4,663,897 - MPMX20_04460 0.16 -1.4 4,663,943 - MPMX20_04460 0.26 +0.1 4,663,980 + MPMX20_04460 0.34 -4.1 4,663,988 - MPMX20_04460 0.35 +1.2 4,664,016 + MPMX20_04460 0.41 -1.5 4,664,047 - MPMX20_04460 0.48 -2.4 4,664,147 - MPMX20_04460 0.69 -2.9 4,664,192 - MPMX20_04460 0.79 -3.4 4,664,208 + MPMX20_04460 0.82 +0.2 4,664,238 + MPMX20_04460 0.89 -0.3 4,664,243 + MPMX20_04460 0.90 -2.4 4,664,248 + -0.1 4,664,248 + -3.5 4,664,248 + -3.1 4,664,248 + -1.6 4,664,248 + -4.2 4,664,248 + -0.3 4,664,256 - -2.9 4,664,256 - -1.8 4,664,256 - -2.0 4,664,275 - -2.2 4,664,282 - -3.1 4,664,365 + +0.6 4,664,380 - -0.1 4,664,380 - +0.4 4,664,387 - +0.2 4,664,455 - MPMX20_04461 0.13 +0.5 4,664,503 - MPMX20_04461 0.18 -2.6 4,664,511 + MPMX20_04461 0.19 -1.2 4,664,513 - MPMX20_04461 0.19 -0.1 4,664,556 + MPMX20_04461 0.24 +0.5 4,664,572 + MPMX20_04461 0.26 +1.9 4,664,584 + MPMX20_04461 0.27 +0.3 4,664,614 - MPMX20_04461 0.30 -0.1 4,664,614 - MPMX20_04461 0.30 -0.8 4,664,638 + MPMX20_04461 0.33 +1.0 4,664,643 + MPMX20_04461 0.34 +0.5 4,664,643 + MPMX20_04461 0.34 +1.1 4,664,674 + MPMX20_04461 0.37 -0.4 4,664,679 + MPMX20_04461 0.38 -3.2 4,664,679 + MPMX20_04461 0.38 -1.2 4,664,679 + MPMX20_04461 0.38 +1.2 4,664,687 - MPMX20_04461 0.38 +1.6 4,664,692 - MPMX20_04461 0.39 -1.8 4,664,735 + MPMX20_04461 0.44 +2.2 4,664,765 - MPMX20_04461 0.47 -1.0 4,664,779 + MPMX20_04461 0.49 +1.2 4,664,801 + MPMX20_04461 0.51 -1.0 4,664,987 - MPMX20_04461 0.72 -0.5 4,664,997 - MPMX20_04461 0.73 -0.5 4,665,025 + MPMX20_04461 0.76 -2.2 4,665,025 + MPMX20_04461 0.76 +2.2 4,665,084 + MPMX20_04461 0.83 -0.8 4,665,209 + -2.2 4,665,271 + -0.3
Or see this region's nucleotide sequence