Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04314 and MPMX20_04315 are separated by 230 nucleotides MPMX20_04315 and MPMX20_04316 are separated by 177 nucleotides MPMX20_04316 and MPMX20_04317 are separated by 50 nucleotides
MPMX20_04314: MPMX20_04314 - 1,4-alpha-glucan branching enzyme GlgB, at 4,507,159 to 4,509,345
_04314
MPMX20_04315: MPMX20_04315 - Aspartate-semialdehyde dehydrogenase, at 4,509,576 to 4,510,679
_04315
MPMX20_04316: MPMX20_04316 - hypothetical protein, at 4,510,857 to 4,511,450
_04316
MPMX20_04317: MPMX20_04317 - Low-affinity gluconate transporter, at 4,511,501 to 4,512,841
_04317
Position (kb)
4509
4510
4511 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4508.657 kb on - strand, within MPMX20_04314 at 4508.718 kb on - strand, within MPMX20_04314 at 4508.807 kb on + strand, within MPMX20_04314 at 4508.815 kb on - strand, within MPMX20_04314 at 4508.815 kb on - strand, within MPMX20_04314 at 4508.817 kb on + strand, within MPMX20_04314 at 4508.992 kb on - strand, within MPMX20_04314 at 4509.007 kb on - strand, within MPMX20_04314 at 4509.007 kb on - strand, within MPMX20_04314 at 4509.007 kb on - strand, within MPMX20_04314 at 4509.046 kb on + strand, within MPMX20_04314 at 4509.119 kb on - strand, within MPMX20_04314 at 4509.210 kb on + strand at 4509.218 kb on - strand at 4509.223 kb on + strand at 4509.268 kb on + strand at 4509.270 kb on - strand at 4509.324 kb on - strand at 4509.335 kb on + strand at 4509.335 kb on + strand at 4509.392 kb on - strand at 4509.393 kb on + strand at 4509.393 kb on + strand at 4509.393 kb on + strand at 4509.393 kb on + strand at 4509.393 kb on + strand at 4509.401 kb on - strand at 4509.401 kb on - strand at 4509.401 kb on - strand at 4509.401 kb on - strand at 4509.401 kb on - strand at 4509.401 kb on - strand at 4509.420 kb on + strand at 4509.426 kb on - strand at 4509.426 kb on - strand at 4509.428 kb on - strand at 4509.430 kb on + strand at 4509.430 kb on + strand at 4509.430 kb on + strand at 4509.430 kb on + strand at 4509.430 kb on + strand at 4509.433 kb on - strand at 4509.482 kb on + strand at 4509.486 kb on - strand at 4509.555 kb on + strand at 4510.705 kb on + strand at 4510.747 kb on - strand at 4510.838 kb on - strand at 4510.838 kb on - strand at 4510.873 kb on - strand at 4510.913 kb on - strand at 4510.940 kb on + strand, within MPMX20_04316 at 4510.953 kb on + strand, within MPMX20_04316 at 4510.961 kb on - strand, within MPMX20_04316 at 4510.988 kb on + strand, within MPMX20_04316 at 4511.055 kb on - strand, within MPMX20_04316 at 4511.062 kb on + strand, within MPMX20_04316 at 4511.086 kb on + strand, within MPMX20_04316 at 4511.232 kb on - strand, within MPMX20_04316 at 4511.323 kb on - strand, within MPMX20_04316 at 4511.329 kb on - strand, within MPMX20_04316 at 4511.406 kb on + strand at 4511.421 kb on + strand at 4511.438 kb on + strand at 4511.438 kb on + strand at 4511.504 kb on + strand at 4511.525 kb on + strand at 4511.623 kb on + strand at 4511.656 kb on + strand, within MPMX20_04317 at 4511.664 kb on - strand, within MPMX20_04317
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2 remove 4,508,657 - MPMX20_04314 0.68 +1.8 4,508,718 - MPMX20_04314 0.71 -0.8 4,508,807 + MPMX20_04314 0.75 -0.6 4,508,815 - MPMX20_04314 0.76 -1.4 4,508,815 - MPMX20_04314 0.76 -0.7 4,508,817 + MPMX20_04314 0.76 +3.6 4,508,992 - MPMX20_04314 0.84 -2.3 4,509,007 - MPMX20_04314 0.84 -4.1 4,509,007 - MPMX20_04314 0.84 -0.4 4,509,007 - MPMX20_04314 0.84 +0.3 4,509,046 + MPMX20_04314 0.86 -3.4 4,509,119 - MPMX20_04314 0.90 +1.3 4,509,210 + +0.4 4,509,218 - -1.1 4,509,223 + -1.8 4,509,268 + +1.2 4,509,270 - -1.8 4,509,324 - -0.6 4,509,335 + -1.1 4,509,335 + -1.7 4,509,392 - +0.4 4,509,393 + -3.6 4,509,393 + -0.9 4,509,393 + -3.4 4,509,393 + -0.3 4,509,393 + -0.1 4,509,401 - +1.0 4,509,401 - +4.3 4,509,401 - +1.5 4,509,401 - -1.0 4,509,401 - +0.1 4,509,401 - -0.8 4,509,420 + -2.1 4,509,426 - -0.2 4,509,426 - +1.4 4,509,428 - -0.8 4,509,430 + -2.0 4,509,430 + +1.8 4,509,430 + -1.3 4,509,430 + -0.3 4,509,430 + +1.7 4,509,433 - +0.4 4,509,482 + -0.2 4,509,486 - +1.2 4,509,555 + -1.7 4,510,705 + +1.2 4,510,747 - -2.8 4,510,838 - -1.1 4,510,838 - +0.7 4,510,873 - +0.0 4,510,913 - +0.7 4,510,940 + MPMX20_04316 0.14 -1.7 4,510,953 + MPMX20_04316 0.16 +0.2 4,510,961 - MPMX20_04316 0.18 +1.9 4,510,988 + MPMX20_04316 0.22 +1.4 4,511,055 - MPMX20_04316 0.33 +0.9 4,511,062 + MPMX20_04316 0.35 +0.4 4,511,086 + MPMX20_04316 0.39 +0.5 4,511,232 - MPMX20_04316 0.63 +2.4 4,511,323 - MPMX20_04316 0.78 -0.0 4,511,329 - MPMX20_04316 0.79 -2.0 4,511,406 + +0.2 4,511,421 + -1.2 4,511,438 + +0.1 4,511,438 + -0.8 4,511,504 + +1.3 4,511,525 + +2.2 4,511,623 + -0.6 4,511,656 + MPMX20_04317 0.12 -1.8 4,511,664 - MPMX20_04317 0.12 -1.3
Or see this region's nucleotide sequence