Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04250 and MPMX20_04251 are separated by 122 nucleotides MPMX20_04251 and MPMX20_04252 overlap by 4 nucleotides MPMX20_04252 and MPMX20_04253 overlap by 8 nucleotides MPMX20_04253 and MPMX20_04254 are separated by 9 nucleotides
MPMX20_04250: MPMX20_04250 - hypothetical protein, at 4,433,325 to 4,434,284
_04250
MPMX20_04251: MPMX20_04251 - hypothetical protein, at 4,434,407 to 4,435,210
_04251
MPMX20_04252: MPMX20_04252 - Malonyl-S-ACP:biotin-protein carboxyltransferase MADC, at 4,435,207 to 4,436,040
_04252
MPMX20_04253: MPMX20_04253 - Malonate decarboxylase acyl carrier protein, at 4,436,033 to 4,436,332
_04253
MPMX20_04254: MPMX20_04254 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 4,436,342 to 4,437,199
_04254
Position (kb)
4435
4436
4437 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 4434.214 kb on - strand at 4434.234 kb on - strand at 4434.365 kb on + strand at 4434.384 kb on - strand at 4434.488 kb on + strand, within MPMX20_04251 at 4434.488 kb on + strand, within MPMX20_04251 at 4434.488 kb on + strand, within MPMX20_04251 at 4434.491 kb on - strand, within MPMX20_04251 at 4434.496 kb on - strand, within MPMX20_04251 at 4434.496 kb on - strand, within MPMX20_04251 at 4434.510 kb on + strand, within MPMX20_04251 at 4434.510 kb on + strand, within MPMX20_04251 at 4434.525 kb on + strand, within MPMX20_04251 at 4434.525 kb on + strand, within MPMX20_04251 at 4434.533 kb on - strand, within MPMX20_04251 at 4434.535 kb on + strand, within MPMX20_04251 at 4434.544 kb on - strand, within MPMX20_04251 at 4434.603 kb on - strand, within MPMX20_04251 at 4434.620 kb on + strand, within MPMX20_04251 at 4434.672 kb on - strand, within MPMX20_04251 at 4434.691 kb on + strand, within MPMX20_04251 at 4434.698 kb on + strand, within MPMX20_04251 at 4434.698 kb on + strand, within MPMX20_04251 at 4434.734 kb on - strand, within MPMX20_04251 at 4434.802 kb on + strand, within MPMX20_04251 at 4434.838 kb on + strand, within MPMX20_04251 at 4434.850 kb on - strand, within MPMX20_04251 at 4434.850 kb on - strand, within MPMX20_04251 at 4434.856 kb on - strand, within MPMX20_04251 at 4434.954 kb on + strand, within MPMX20_04251 at 4434.962 kb on - strand, within MPMX20_04251 at 4434.967 kb on - strand, within MPMX20_04251 at 4434.976 kb on + strand, within MPMX20_04251 at 4435.008 kb on + strand, within MPMX20_04251 at 4435.129 kb on + strand, within MPMX20_04251 at 4435.137 kb on - strand at 4435.137 kb on - strand at 4435.137 kb on - strand at 4435.189 kb on + strand at 4435.232 kb on + strand at 4435.240 kb on - strand at 4435.240 kb on - strand at 4435.240 kb on - strand at 4435.247 kb on + strand at 4435.257 kb on + strand at 4435.257 kb on + strand at 4435.257 kb on + strand at 4435.257 kb on + strand at 4435.379 kb on + strand, within MPMX20_04252 at 4435.462 kb on + strand, within MPMX20_04252 at 4435.482 kb on - strand, within MPMX20_04252 at 4435.497 kb on + strand, within MPMX20_04252 at 4435.505 kb on - strand, within MPMX20_04252 at 4435.505 kb on - strand, within MPMX20_04252 at 4435.505 kb on - strand, within MPMX20_04252 at 4435.505 kb on - strand, within MPMX20_04252 at 4435.505 kb on - strand, within MPMX20_04252 at 4435.505 kb on - strand, within MPMX20_04252 at 4435.505 kb on - strand, within MPMX20_04252 at 4435.554 kb on + strand, within MPMX20_04252 at 4435.625 kb on - strand, within MPMX20_04252 at 4435.627 kb on + strand, within MPMX20_04252 at 4435.640 kb on - strand, within MPMX20_04252 at 4435.822 kb on - strand, within MPMX20_04252 at 4435.844 kb on + strand, within MPMX20_04252 at 4435.902 kb on + strand, within MPMX20_04252 at 4435.904 kb on + strand, within MPMX20_04252 at 4435.907 kb on - strand, within MPMX20_04252 at 4436.040 kb on + strand at 4436.042 kb on + strand at 4436.042 kb on + strand at 4436.043 kb on - strand at 4436.049 kb on - strand at 4436.050 kb on - strand at 4436.144 kb on + strand, within MPMX20_04253 at 4436.268 kb on + strand, within MPMX20_04253 at 4436.347 kb on + strand at 4436.352 kb on + strand at 4436.428 kb on - strand, within MPMX20_04254 at 4436.428 kb on - strand, within MPMX20_04254 at 4436.453 kb on + strand, within MPMX20_04254 at 4436.462 kb on + strand, within MPMX20_04254 at 4436.501 kb on - strand, within MPMX20_04254 at 4436.526 kb on + strand, within MPMX20_04254 at 4436.639 kb on + strand, within MPMX20_04254 at 4436.639 kb on + strand, within MPMX20_04254 at 4436.656 kb on + strand, within MPMX20_04254 at 4436.664 kb on - strand, within MPMX20_04254 at 4436.742 kb on + strand, within MPMX20_04254 at 4436.748 kb on - strand, within MPMX20_04254 at 4436.847 kb on + strand, within MPMX20_04254 at 4436.942 kb on - strand, within MPMX20_04254 at 4436.944 kb on + strand, within MPMX20_04254 at 4437.012 kb on - strand, within MPMX20_04254 at 4437.012 kb on - strand, within MPMX20_04254 at 4437.028 kb on + strand, within MPMX20_04254
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2 remove 4,434,214 - -0.8 4,434,234 - -2.6 4,434,365 + +0.0 4,434,384 - -1.3 4,434,488 + MPMX20_04251 0.10 +0.6 4,434,488 + MPMX20_04251 0.10 -1.1 4,434,488 + MPMX20_04251 0.10 -1.2 4,434,491 - MPMX20_04251 0.10 +0.8 4,434,496 - MPMX20_04251 0.11 +2.6 4,434,496 - MPMX20_04251 0.11 +4.2 4,434,510 + MPMX20_04251 0.13 +1.0 4,434,510 + MPMX20_04251 0.13 -0.7 4,434,525 + MPMX20_04251 0.15 -0.6 4,434,525 + MPMX20_04251 0.15 -2.7 4,434,533 - MPMX20_04251 0.16 +0.2 4,434,535 + MPMX20_04251 0.16 +0.3 4,434,544 - MPMX20_04251 0.17 -1.4 4,434,603 - MPMX20_04251 0.24 +0.9 4,434,620 + MPMX20_04251 0.26 -1.9 4,434,672 - MPMX20_04251 0.33 -2.0 4,434,691 + MPMX20_04251 0.35 -0.9 4,434,698 + MPMX20_04251 0.36 -1.1 4,434,698 + MPMX20_04251 0.36 +2.7 4,434,734 - MPMX20_04251 0.41 -0.6 4,434,802 + MPMX20_04251 0.49 +1.3 4,434,838 + MPMX20_04251 0.54 -1.9 4,434,850 - MPMX20_04251 0.55 +2.1 4,434,850 - MPMX20_04251 0.55 -0.1 4,434,856 - MPMX20_04251 0.56 -0.8 4,434,954 + MPMX20_04251 0.68 -0.2 4,434,962 - MPMX20_04251 0.69 +0.5 4,434,967 - MPMX20_04251 0.70 -1.1 4,434,976 + MPMX20_04251 0.71 -1.4 4,435,008 + MPMX20_04251 0.75 +0.9 4,435,129 + MPMX20_04251 0.90 -1.4 4,435,137 - -0.4 4,435,137 - -0.8 4,435,137 - -2.2 4,435,189 + -2.0 4,435,232 + +2.2 4,435,240 - -0.9 4,435,240 - -3.3 4,435,240 - +5.4 4,435,247 + +1.0 4,435,257 + -2.5 4,435,257 + -2.8 4,435,257 + -2.9 4,435,257 + -0.1 4,435,379 + MPMX20_04252 0.21 +1.4 4,435,462 + MPMX20_04252 0.31 +1.1 4,435,482 - MPMX20_04252 0.33 -2.5 4,435,497 + MPMX20_04252 0.35 +0.5 4,435,505 - MPMX20_04252 0.36 +2.0 4,435,505 - MPMX20_04252 0.36 -2.0 4,435,505 - MPMX20_04252 0.36 +0.9 4,435,505 - MPMX20_04252 0.36 -1.1 4,435,505 - MPMX20_04252 0.36 +1.6 4,435,505 - MPMX20_04252 0.36 -3.8 4,435,505 - MPMX20_04252 0.36 +2.1 4,435,554 + MPMX20_04252 0.42 -0.3 4,435,625 - MPMX20_04252 0.50 -1.9 4,435,627 + MPMX20_04252 0.50 +2.0 4,435,640 - MPMX20_04252 0.52 -0.1 4,435,822 - MPMX20_04252 0.74 -2.4 4,435,844 + MPMX20_04252 0.76 -2.6 4,435,902 + MPMX20_04252 0.83 +2.5 4,435,904 + MPMX20_04252 0.84 +0.1 4,435,907 - MPMX20_04252 0.84 +0.1 4,436,040 + +1.3 4,436,042 + +2.3 4,436,042 + -1.7 4,436,043 - -0.4 4,436,049 - -0.7 4,436,050 - -1.4 4,436,144 + MPMX20_04253 0.37 +0.3 4,436,268 + MPMX20_04253 0.78 -1.8 4,436,347 + +2.0 4,436,352 + -2.3 4,436,428 - MPMX20_04254 0.10 +0.2 4,436,428 - MPMX20_04254 0.10 +1.3 4,436,453 + MPMX20_04254 0.13 +1.2 4,436,462 + MPMX20_04254 0.14 -0.1 4,436,501 - MPMX20_04254 0.19 +0.1 4,436,526 + MPMX20_04254 0.21 +1.7 4,436,639 + MPMX20_04254 0.35 +0.6 4,436,639 + MPMX20_04254 0.35 +0.5 4,436,656 + MPMX20_04254 0.37 -1.5 4,436,664 - MPMX20_04254 0.38 -1.7 4,436,742 + MPMX20_04254 0.47 -0.3 4,436,748 - MPMX20_04254 0.47 +2.0 4,436,847 + MPMX20_04254 0.59 +0.7 4,436,942 - MPMX20_04254 0.70 +0.7 4,436,944 + MPMX20_04254 0.70 -2.3 4,437,012 - MPMX20_04254 0.78 +2.2 4,437,012 - MPMX20_04254 0.78 -1.3 4,437,028 + MPMX20_04254 0.80 -1.6
Or see this region's nucleotide sequence