Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03676 and MPMX20_03677 are separated by 209 nucleotides MPMX20_03677 and MPMX20_03678 are separated by 44 nucleotides MPMX20_03678 and MPMX20_03679 are separated by 44 nucleotides MPMX20_03679 and MPMX20_03680 are separated by 88 nucleotides
MPMX20_03676: MPMX20_03676 - Membrane-bound lytic murein transglycosylase A, at 3,870,462 to 3,871,559
_03676
MPMX20_03677: MPMX20_03677 - tRNA-Met, at 3,871,769 to 3,871,845
_03677
MPMX20_03678: MPMX20_03678 - tRNA-Met, at 3,871,890 to 3,871,966
_03678
MPMX20_03679: MPMX20_03679 - tRNA-Met, at 3,872,011 to 3,872,087
_03679
MPMX20_03680: MPMX20_03680 - N-acetylmuramoyl-L-alanine amidase AmiC, at 3,872,176 to 3,873,429
_03680
Position (kb)
3871
3872 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3870.920 kb on - strand, within MPMX20_03676 at 3870.939 kb on + strand, within MPMX20_03676 at 3870.972 kb on + strand, within MPMX20_03676 at 3870.980 kb on - strand, within MPMX20_03676 at 3870.980 kb on - strand, within MPMX20_03676 at 3871.011 kb on + strand, within MPMX20_03676 at 3871.019 kb on - strand, within MPMX20_03676 at 3871.079 kb on + strand, within MPMX20_03676 at 3871.117 kb on - strand, within MPMX20_03676 at 3871.176 kb on + strand, within MPMX20_03676 at 3871.277 kb on + strand, within MPMX20_03676 at 3871.302 kb on + strand, within MPMX20_03676 at 3871.302 kb on + strand, within MPMX20_03676 at 3871.302 kb on + strand, within MPMX20_03676 at 3871.310 kb on - strand, within MPMX20_03676 at 3871.310 kb on - strand, within MPMX20_03676 at 3871.310 kb on - strand, within MPMX20_03676 at 3871.310 kb on - strand, within MPMX20_03676 at 3871.401 kb on - strand, within MPMX20_03676 at 3871.414 kb on + strand, within MPMX20_03676 at 3871.441 kb on + strand, within MPMX20_03676 at 3871.467 kb on - strand at 3871.487 kb on + strand at 3871.495 kb on - strand at 3871.495 kb on - strand at 3871.539 kb on - strand at 3871.640 kb on - strand at 3871.703 kb on + strand at 3871.943 kb on + strand, within MPMX20_03678 at 3872.140 kb on + strand at 3872.156 kb on + strand at 3872.178 kb on + strand at 3872.181 kb on - strand at 3872.183 kb on + strand at 3872.186 kb on - strand at 3872.186 kb on - strand at 3872.283 kb on + strand at 3872.293 kb on - strand at 3872.317 kb on - strand, within MPMX20_03680 at 3872.341 kb on + strand, within MPMX20_03680 at 3872.347 kb on - strand, within MPMX20_03680 at 3872.349 kb on + strand, within MPMX20_03680 at 3872.372 kb on - strand, within MPMX20_03680 at 3872.372 kb on - strand, within MPMX20_03680 at 3872.394 kb on - strand, within MPMX20_03680 at 3872.427 kb on + strand, within MPMX20_03680 at 3872.441 kb on + strand, within MPMX20_03680 at 3872.506 kb on - strand, within MPMX20_03680 at 3872.520 kb on + strand, within MPMX20_03680 at 3872.520 kb on + strand, within MPMX20_03680 at 3872.520 kb on + strand, within MPMX20_03680 at 3872.528 kb on - strand, within MPMX20_03680 at 3872.528 kb on - strand, within MPMX20_03680 at 3872.528 kb on - strand, within MPMX20_03680 at 3872.574 kb on + strand, within MPMX20_03680 at 3872.610 kb on + strand, within MPMX20_03680 at 3872.660 kb on - strand, within MPMX20_03680 at 3872.844 kb on + strand, within MPMX20_03680 at 3872.844 kb on + strand, within MPMX20_03680 at 3872.868 kb on - strand, within MPMX20_03680 at 3872.905 kb on + strand, within MPMX20_03680 at 3872.938 kb on + strand, within MPMX20_03680 at 3872.951 kb on - strand, within MPMX20_03680
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2 remove 3,870,920 - MPMX20_03676 0.42 -1.4 3,870,939 + MPMX20_03676 0.43 +1.4 3,870,972 + MPMX20_03676 0.46 +0.2 3,870,980 - MPMX20_03676 0.47 -3.6 3,870,980 - MPMX20_03676 0.47 -1.2 3,871,011 + MPMX20_03676 0.50 +0.2 3,871,019 - MPMX20_03676 0.51 +2.3 3,871,079 + MPMX20_03676 0.56 +1.3 3,871,117 - MPMX20_03676 0.60 +0.3 3,871,176 + MPMX20_03676 0.65 -0.5 3,871,277 + MPMX20_03676 0.74 -1.2 3,871,302 + MPMX20_03676 0.77 -0.9 3,871,302 + MPMX20_03676 0.77 +0.4 3,871,302 + MPMX20_03676 0.77 +0.7 3,871,310 - MPMX20_03676 0.77 -0.3 3,871,310 - MPMX20_03676 0.77 +1.0 3,871,310 - MPMX20_03676 0.77 +1.4 3,871,310 - MPMX20_03676 0.77 +1.7 3,871,401 - MPMX20_03676 0.86 -0.5 3,871,414 + MPMX20_03676 0.87 +0.2 3,871,441 + MPMX20_03676 0.89 -2.6 3,871,467 - +0.8 3,871,487 + -0.3 3,871,495 - -0.5 3,871,495 - -0.0 3,871,539 - +1.6 3,871,640 - +1.5 3,871,703 + -1.2 3,871,943 + MPMX20_03678 0.69 -3.7 3,872,140 + +1.6 3,872,156 + -0.0 3,872,178 + -0.4 3,872,181 - +0.8 3,872,183 + -0.7 3,872,186 - +0.1 3,872,186 - +1.0 3,872,283 + -1.8 3,872,293 - -1.3 3,872,317 - MPMX20_03680 0.11 -1.4 3,872,341 + MPMX20_03680 0.13 +0.3 3,872,347 - MPMX20_03680 0.14 -1.0 3,872,349 + MPMX20_03680 0.14 -0.3 3,872,372 - MPMX20_03680 0.16 -0.4 3,872,372 - MPMX20_03680 0.16 +0.9 3,872,394 - MPMX20_03680 0.17 -0.5 3,872,427 + MPMX20_03680 0.20 +0.5 3,872,441 + MPMX20_03680 0.21 -2.9 3,872,506 - MPMX20_03680 0.26 -1.2 3,872,520 + MPMX20_03680 0.27 +0.6 3,872,520 + MPMX20_03680 0.27 +0.3 3,872,520 + MPMX20_03680 0.27 -0.8 3,872,528 - MPMX20_03680 0.28 -0.4 3,872,528 - MPMX20_03680 0.28 -1.7 3,872,528 - MPMX20_03680 0.28 -2.1 3,872,574 + MPMX20_03680 0.32 -1.0 3,872,610 + MPMX20_03680 0.35 -0.1 3,872,660 - MPMX20_03680 0.39 -0.1 3,872,844 + MPMX20_03680 0.53 +2.3 3,872,844 + MPMX20_03680 0.53 +1.5 3,872,868 - MPMX20_03680 0.55 +0.5 3,872,905 + MPMX20_03680 0.58 -1.1 3,872,938 + MPMX20_03680 0.61 -1.8 3,872,951 - MPMX20_03680 0.62 +0.9
Or see this region's nucleotide sequence