Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03633 and MPMX20_03634 are separated by 19 nucleotides MPMX20_03634 and MPMX20_03635 are separated by 166 nucleotides MPMX20_03635 and MPMX20_03636 are separated by 58 nucleotides MPMX20_03636 and MPMX20_03637 overlap by 1 nucleotides
MPMX20_03633: MPMX20_03633 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 3,821,492 to 3,822,202
_03633
MPMX20_03634: MPMX20_03634 - Cell division protein FtsB, at 3,822,222 to 3,822,533
_03634
MPMX20_03635: MPMX20_03635 - Inner membrane protein YgbE, at 3,822,700 to 3,823,026
_03635
MPMX20_03636: MPMX20_03636 - Adenylyl-sulfate kinase, at 3,823,085 to 3,823,690
_03636
MPMX20_03637: MPMX20_03637 - Sulfate adenylyltransferase subunit 1, at 3,823,690 to 3,825,114
_03637
Position (kb)
3822
3823
3824 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3822.246 kb on - strand at 3822.246 kb on - strand at 3822.598 kb on - strand at 3822.610 kb on - strand at 3822.653 kb on + strand at 3822.653 kb on + strand at 3822.733 kb on + strand, within MPMX20_03635 at 3822.801 kb on + strand, within MPMX20_03635 at 3822.801 kb on + strand, within MPMX20_03635 at 3822.801 kb on + strand, within MPMX20_03635 at 3822.804 kb on - strand, within MPMX20_03635 at 3822.814 kb on - strand, within MPMX20_03635 at 3822.861 kb on - strand, within MPMX20_03635 at 3822.871 kb on - strand, within MPMX20_03635 at 3822.873 kb on + strand, within MPMX20_03635 at 3822.873 kb on + strand, within MPMX20_03635 at 3822.992 kb on - strand, within MPMX20_03635 at 3823.018 kb on + strand at 3823.018 kb on + strand at 3823.062 kb on + strand at 3823.084 kb on + strand at 3823.107 kb on + strand at 3823.112 kb on + strand at 3823.204 kb on - strand, within MPMX20_03636 at 3823.420 kb on + strand, within MPMX20_03636 at 3823.428 kb on - strand, within MPMX20_03636 at 3823.483 kb on - strand, within MPMX20_03636 at 3823.510 kb on + strand, within MPMX20_03636 at 3823.522 kb on + strand, within MPMX20_03636 at 3823.560 kb on + strand, within MPMX20_03636 at 3823.565 kb on + strand, within MPMX20_03636 at 3823.575 kb on + strand, within MPMX20_03636 at 3823.583 kb on - strand, within MPMX20_03636 at 3823.588 kb on + strand, within MPMX20_03636 at 3823.603 kb on - strand, within MPMX20_03636 at 3823.644 kb on - strand at 3823.644 kb on - strand at 3823.644 kb on - strand at 3823.670 kb on + strand at 3823.705 kb on - strand at 3823.784 kb on - strand at 3823.787 kb on + strand at 3823.787 kb on + strand at 3823.787 kb on + strand at 3823.808 kb on - strand at 3823.838 kb on - strand, within MPMX20_03637 at 3823.940 kb on - strand, within MPMX20_03637 at 3823.940 kb on - strand, within MPMX20_03637 at 3823.979 kb on - strand, within MPMX20_03637 at 3823.992 kb on + strand, within MPMX20_03637 at 3823.999 kb on - strand, within MPMX20_03637 at 3824.010 kb on - strand, within MPMX20_03637
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2 remove 3,822,246 - +0.3 3,822,246 - -2.0 3,822,598 - -0.6 3,822,610 - -1.1 3,822,653 + +0.3 3,822,653 + -1.4 3,822,733 + MPMX20_03635 0.10 -1.6 3,822,801 + MPMX20_03635 0.31 -0.5 3,822,801 + MPMX20_03635 0.31 -0.6 3,822,801 + MPMX20_03635 0.31 -1.0 3,822,804 - MPMX20_03635 0.32 -0.3 3,822,814 - MPMX20_03635 0.35 -0.0 3,822,861 - MPMX20_03635 0.49 -2.1 3,822,871 - MPMX20_03635 0.52 +0.3 3,822,873 + MPMX20_03635 0.53 -1.2 3,822,873 + MPMX20_03635 0.53 +0.1 3,822,992 - MPMX20_03635 0.89 -1.1 3,823,018 + -0.8 3,823,018 + -0.5 3,823,062 + +0.9 3,823,084 + -0.2 3,823,107 + -0.9 3,823,112 + -1.8 3,823,204 - MPMX20_03636 0.20 -2.6 3,823,420 + MPMX20_03636 0.55 -1.0 3,823,428 - MPMX20_03636 0.57 +0.9 3,823,483 - MPMX20_03636 0.66 +0.6 3,823,510 + MPMX20_03636 0.70 -1.7 3,823,522 + MPMX20_03636 0.72 +2.0 3,823,560 + MPMX20_03636 0.78 -0.2 3,823,565 + MPMX20_03636 0.79 -2.8 3,823,575 + MPMX20_03636 0.81 +0.3 3,823,583 - MPMX20_03636 0.82 -0.7 3,823,588 + MPMX20_03636 0.83 -3.4 3,823,603 - MPMX20_03636 0.85 -3.2 3,823,644 - +0.7 3,823,644 - +0.4 3,823,644 - -0.7 3,823,670 + -2.0 3,823,705 - -0.5 3,823,784 - -0.3 3,823,787 + +1.3 3,823,787 + -2.5 3,823,787 + +0.2 3,823,808 - -0.3 3,823,838 - MPMX20_03637 0.10 -1.5 3,823,940 - MPMX20_03637 0.18 +1.3 3,823,940 - MPMX20_03637 0.18 +2.9 3,823,979 - MPMX20_03637 0.20 -0.1 3,823,992 + MPMX20_03637 0.21 -0.5 3,823,999 - MPMX20_03637 0.22 -0.9 3,824,010 - MPMX20_03637 0.22 +2.5
Or see this region's nucleotide sequence