Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03454 and MPMX20_03455 are separated by 45 nucleotides MPMX20_03455 and MPMX20_03456 overlap by 4 nucleotides MPMX20_03456 and MPMX20_03457 are separated by 258 nucleotides MPMX20_03457 and MPMX20_03458 are separated by 67 nucleotides
MPMX20_03454: MPMX20_03454 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 3,642,710 to 3,644,065
_03454
MPMX20_03455: MPMX20_03455 - hypothetical protein, at 3,644,111 to 3,644,434
_03455
MPMX20_03456: MPMX20_03456 - Alpha-ketoglutarate permease, at 3,644,431 to 3,645,726
_03456
MPMX20_03457: MPMX20_03457 - 5S ribosomal RNA, at 3,645,985 to 3,646,095
_03457
MPMX20_03458: MPMX20_03458 - 23S ribosomal RNA, at 3,646,163 to 3,649,065
_03458
Position (kb)
3644
3645
3646 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3644.067 kb on + strand at 3644.075 kb on - strand at 3644.075 kb on - strand at 3644.075 kb on - strand at 3644.075 kb on - strand at 3644.075 kb on - strand at 3644.123 kb on + strand at 3644.173 kb on - strand, within MPMX20_03455 at 3644.188 kb on + strand, within MPMX20_03455 at 3644.188 kb on + strand, within MPMX20_03455 at 3644.196 kb on - strand, within MPMX20_03455 at 3644.570 kb on + strand, within MPMX20_03456 at 3644.570 kb on + strand, within MPMX20_03456 at 3644.580 kb on + strand, within MPMX20_03456 at 3644.588 kb on - strand, within MPMX20_03456 at 3644.638 kb on + strand, within MPMX20_03456 at 3644.646 kb on - strand, within MPMX20_03456 at 3644.714 kb on - strand, within MPMX20_03456 at 3644.768 kb on - strand, within MPMX20_03456 at 3644.770 kb on - strand, within MPMX20_03456 at 3644.816 kb on - strand, within MPMX20_03456 at 3644.850 kb on + strand, within MPMX20_03456 at 3644.850 kb on + strand, within MPMX20_03456 at 3644.914 kb on - strand, within MPMX20_03456 at 3644.964 kb on - strand, within MPMX20_03456 at 3645.047 kb on + strand, within MPMX20_03456 at 3645.075 kb on - strand, within MPMX20_03456 at 3645.310 kb on + strand, within MPMX20_03456 at 3645.536 kb on - strand, within MPMX20_03456 at 3645.549 kb on + strand, within MPMX20_03456 at 3645.650 kb on + strand at 3645.716 kb on - strand at 3645.773 kb on - strand at 3645.874 kb on + strand at 3645.902 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2 remove 3,644,067 + -1.8 3,644,075 - -1.3 3,644,075 - -1.2 3,644,075 - -0.8 3,644,075 - +2.4 3,644,075 - -1.9 3,644,123 + -0.2 3,644,173 - MPMX20_03455 0.19 -1.0 3,644,188 + MPMX20_03455 0.24 -1.5 3,644,188 + MPMX20_03455 0.24 +1.1 3,644,196 - MPMX20_03455 0.26 +0.3 3,644,570 + MPMX20_03456 0.11 -2.2 3,644,570 + MPMX20_03456 0.11 -0.6 3,644,580 + MPMX20_03456 0.11 -2.5 3,644,588 - MPMX20_03456 0.12 +0.2 3,644,638 + MPMX20_03456 0.16 +0.4 3,644,646 - MPMX20_03456 0.17 -2.2 3,644,714 - MPMX20_03456 0.22 -3.2 3,644,768 - MPMX20_03456 0.26 +0.2 3,644,770 - MPMX20_03456 0.26 +0.0 3,644,816 - MPMX20_03456 0.30 +0.2 3,644,850 + MPMX20_03456 0.32 -0.6 3,644,850 + MPMX20_03456 0.32 -1.1 3,644,914 - MPMX20_03456 0.37 +0.4 3,644,964 - MPMX20_03456 0.41 -0.9 3,645,047 + MPMX20_03456 0.48 -0.9 3,645,075 - MPMX20_03456 0.50 -1.6 3,645,310 + MPMX20_03456 0.68 -1.1 3,645,536 - MPMX20_03456 0.85 -2.5 3,645,549 + MPMX20_03456 0.86 -0.6 3,645,650 + -1.6 3,645,716 - +0.5 3,645,773 - -1.6 3,645,874 + +0.0 3,645,902 + -0.2
Or see this region's nucleotide sequence