Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03393 and MPMX20_03394 are separated by 26 nucleotides MPMX20_03394 and MPMX20_03395 are separated by 293 nucleotides
MPMX20_03393: MPMX20_03393 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin), at 3,573,642 to 3,574,760
_03393
MPMX20_03394: MPMX20_03394 - Cytoskeleton protein RodZ, at 3,574,787 to 3,575,788
_03394
MPMX20_03395: MPMX20_03395 - Dual-specificity RNA methyltransferase RlmN, at 3,576,082 to 3,577,248
_03395
Position (kb)
3574
3575
3576 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3574.810 kb on - strand at 3574.842 kb on - strand at 3574.891 kb on - strand, within MPMX20_03394 at 3574.939 kb on + strand, within MPMX20_03394 at 3574.961 kb on - strand, within MPMX20_03394 at 3574.968 kb on + strand, within MPMX20_03394 at 3575.005 kb on - strand, within MPMX20_03394 at 3575.097 kb on + strand, within MPMX20_03394 at 3575.204 kb on + strand, within MPMX20_03394 at 3575.376 kb on + strand, within MPMX20_03394 at 3575.436 kb on - strand, within MPMX20_03394 at 3575.853 kb on - strand at 3575.871 kb on - strand at 3575.877 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.919 kb on + strand at 3575.927 kb on - strand at 3575.932 kb on - strand at 3575.957 kb on + strand at 3575.957 kb on + strand at 3575.965 kb on + strand at 3576.089 kb on + strand at 3576.089 kb on + strand at 3576.119 kb on + strand at 3576.127 kb on - strand at 3576.137 kb on - strand at 3576.137 kb on - strand at 3576.137 kb on - strand at 3576.137 kb on - strand at 3576.158 kb on + strand at 3576.229 kb on - strand, within MPMX20_03395 at 3576.343 kb on - strand, within MPMX20_03395 at 3576.385 kb on - strand, within MPMX20_03395 at 3576.418 kb on + strand, within MPMX20_03395 at 3576.418 kb on + strand, within MPMX20_03395 at 3576.426 kb on - strand, within MPMX20_03395 at 3576.585 kb on - strand, within MPMX20_03395 at 3576.609 kb on + strand, within MPMX20_03395 at 3576.638 kb on - strand, within MPMX20_03395 at 3576.638 kb on - strand, within MPMX20_03395 at 3576.737 kb on - strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.784 kb on - strand, within MPMX20_03395 at 3576.784 kb on - strand, within MPMX20_03395 at 3576.784 kb on - strand, within MPMX20_03395
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2 remove 3,574,810 - -1.3 3,574,842 - +0.3 3,574,891 - MPMX20_03394 0.10 -2.4 3,574,939 + MPMX20_03394 0.15 -0.2 3,574,961 - MPMX20_03394 0.17 -2.1 3,574,968 + MPMX20_03394 0.18 +0.4 3,575,005 - MPMX20_03394 0.22 -2.6 3,575,097 + MPMX20_03394 0.31 +1.4 3,575,204 + MPMX20_03394 0.42 +0.4 3,575,376 + MPMX20_03394 0.59 -1.2 3,575,436 - MPMX20_03394 0.65 -3.0 3,575,853 - +1.4 3,575,871 - +2.8 3,575,877 + -2.2 3,575,891 + -1.1 3,575,891 + -0.2 3,575,891 + +0.8 3,575,891 + +0.8 3,575,891 + -1.0 3,575,891 + +0.8 3,575,891 + +0.8 3,575,891 + -1.1 3,575,891 + +0.2 3,575,891 + -0.2 3,575,891 + -1.1 3,575,891 + -2.7 3,575,891 + -0.5 3,575,891 + -0.4 3,575,899 - +1.2 3,575,899 - +2.0 3,575,899 - +0.6 3,575,899 - -2.5 3,575,899 - -0.3 3,575,899 - -3.1 3,575,899 - +4.0 3,575,899 - +0.2 3,575,899 - -0.5 3,575,899 - -0.0 3,575,899 - -1.8 3,575,899 - -1.3 3,575,899 - -0.8 3,575,899 - +2.1 3,575,899 - -3.1 3,575,899 - -3.3 3,575,899 - +1.6 3,575,919 + +0.6 3,575,927 - +1.4 3,575,932 - -1.2 3,575,957 + -0.5 3,575,957 + -1.8 3,575,965 + +0.8 3,576,089 + -0.4 3,576,089 + +0.4 3,576,119 + +2.4 3,576,127 - +0.8 3,576,137 - +0.5 3,576,137 - -0.4 3,576,137 - -0.4 3,576,137 - -0.3 3,576,158 + +1.3 3,576,229 - MPMX20_03395 0.13 +0.8 3,576,343 - MPMX20_03395 0.22 -1.1 3,576,385 - MPMX20_03395 0.26 +2.6 3,576,418 + MPMX20_03395 0.29 +1.6 3,576,418 + MPMX20_03395 0.29 -1.9 3,576,426 - MPMX20_03395 0.29 +1.3 3,576,585 - MPMX20_03395 0.43 +0.4 3,576,609 + MPMX20_03395 0.45 -3.1 3,576,638 - MPMX20_03395 0.48 +0.5 3,576,638 - MPMX20_03395 0.48 -1.5 3,576,737 - MPMX20_03395 0.56 +0.4 3,576,776 + MPMX20_03395 0.59 +0.6 3,576,776 + MPMX20_03395 0.59 +1.4 3,576,776 + MPMX20_03395 0.59 +1.8 3,576,776 + MPMX20_03395 0.59 -0.4 3,576,776 + MPMX20_03395 0.59 -1.8 3,576,776 + MPMX20_03395 0.59 +0.8 3,576,776 + MPMX20_03395 0.59 -0.2 3,576,784 - MPMX20_03395 0.60 -0.5 3,576,784 - MPMX20_03395 0.60 +1.3 3,576,784 - MPMX20_03395 0.60 +0.4
Or see this region's nucleotide sequence