Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03090 and MPMX20_03091 are separated by 64 nucleotides MPMX20_03091 and MPMX20_03092 are separated by 51 nucleotides MPMX20_03092 and MPMX20_03093 overlap by 7 nucleotides
MPMX20_03090: MPMX20_03090 - Methionine--tRNA ligase, at 3,242,267 to 3,244,300
_03090
MPMX20_03091: MPMX20_03091 - hypothetical protein, at 3,244,365 to 3,244,835
_03091
MPMX20_03092: MPMX20_03092 - Transcriptional regulatory protein BtsR, at 3,244,887 to 3,245,606
_03092
MPMX20_03093: MPMX20_03093 - Sensor histidine kinase BtsS, at 3,245,600 to 3,247,291
_03093
Position (kb)
3244
3245
3246 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3243.932 kb on + strand, within MPMX20_03090 at 3244.088 kb on + strand, within MPMX20_03090 at 3244.260 kb on + strand at 3244.338 kb on + strand at 3244.353 kb on + strand at 3244.358 kb on + strand at 3244.361 kb on - strand at 3244.361 kb on - strand at 3244.361 kb on - strand at 3244.361 kb on - strand at 3244.391 kb on + strand at 3244.472 kb on - strand, within MPMX20_03091 at 3244.508 kb on - strand, within MPMX20_03091 at 3244.559 kb on + strand, within MPMX20_03091 at 3244.578 kb on - strand, within MPMX20_03091 at 3244.667 kb on + strand, within MPMX20_03091 at 3244.667 kb on + strand, within MPMX20_03091 at 3244.681 kb on - strand, within MPMX20_03091 at 3244.730 kb on + strand, within MPMX20_03091 at 3244.737 kb on + strand, within MPMX20_03091 at 3244.798 kb on + strand at 3244.798 kb on + strand at 3244.806 kb on - strand at 3244.806 kb on - strand at 3245.048 kb on + strand, within MPMX20_03092 at 3245.102 kb on - strand, within MPMX20_03092 at 3245.107 kb on - strand, within MPMX20_03092 at 3245.167 kb on + strand, within MPMX20_03092 at 3245.188 kb on + strand, within MPMX20_03092 at 3245.191 kb on - strand, within MPMX20_03092 at 3245.195 kb on + strand, within MPMX20_03092 at 3245.196 kb on - strand, within MPMX20_03092 at 3245.246 kb on - strand, within MPMX20_03092 at 3245.287 kb on - strand, within MPMX20_03092 at 3245.330 kb on + strand, within MPMX20_03092 at 3245.338 kb on - strand, within MPMX20_03092 at 3245.390 kb on + strand, within MPMX20_03092 at 3245.422 kb on - strand, within MPMX20_03092 at 3245.422 kb on - strand, within MPMX20_03092 at 3245.461 kb on + strand, within MPMX20_03092 at 3245.490 kb on - strand, within MPMX20_03092 at 3245.521 kb on + strand, within MPMX20_03092 at 3245.535 kb on - strand at 3245.605 kb on - strand at 3245.605 kb on - strand at 3245.635 kb on + strand at 3245.650 kb on + strand at 3245.725 kb on + strand at 3245.741 kb on + strand at 3245.752 kb on + strand at 3245.766 kb on - strand at 3245.829 kb on + strand, within MPMX20_03093 at 3245.832 kb on - strand, within MPMX20_03093 at 3245.884 kb on + strand, within MPMX20_03093 at 3245.884 kb on + strand, within MPMX20_03093 at 3245.949 kb on + strand, within MPMX20_03093 at 3245.990 kb on - strand, within MPMX20_03093 at 3246.061 kb on - strand, within MPMX20_03093 at 3246.065 kb on - strand, within MPMX20_03093 at 3246.071 kb on - strand, within MPMX20_03093 at 3246.076 kb on + strand, within MPMX20_03093 at 3246.101 kb on + strand, within MPMX20_03093 at 3246.158 kb on - strand, within MPMX20_03093 at 3246.201 kb on + strand, within MPMX20_03093 at 3246.246 kb on - strand, within MPMX20_03093 at 3246.249 kb on + strand, within MPMX20_03093 at 3246.267 kb on - strand, within MPMX20_03093 at 3246.267 kb on - strand, within MPMX20_03093 at 3246.267 kb on - strand, within MPMX20_03093 at 3246.272 kb on - strand, within MPMX20_03093 at 3246.281 kb on - strand, within MPMX20_03093 at 3246.312 kb on - strand, within MPMX20_03093 at 3246.350 kb on + strand, within MPMX20_03093 at 3246.362 kb on + strand, within MPMX20_03093 at 3246.400 kb on - strand, within MPMX20_03093 at 3246.459 kb on - strand, within MPMX20_03093 at 3246.490 kb on - strand, within MPMX20_03093 at 3246.549 kb on + strand, within MPMX20_03093 at 3246.554 kb on + strand, within MPMX20_03093 at 3246.557 kb on - strand, within MPMX20_03093 at 3246.591 kb on - strand, within MPMX20_03093
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2 remove 3,243,932 + MPMX20_03090 0.82 -1.0 3,244,088 + MPMX20_03090 0.90 -2.1 3,244,260 + -2.6 3,244,338 + -1.3 3,244,353 + +1.3 3,244,358 + -2.3 3,244,361 - -2.6 3,244,361 - +0.6 3,244,361 - +0.1 3,244,361 - +0.8 3,244,391 + -1.1 3,244,472 - MPMX20_03091 0.23 -0.7 3,244,508 - MPMX20_03091 0.30 -2.6 3,244,559 + MPMX20_03091 0.41 +1.6 3,244,578 - MPMX20_03091 0.45 +0.2 3,244,667 + MPMX20_03091 0.64 -0.4 3,244,667 + MPMX20_03091 0.64 -1.4 3,244,681 - MPMX20_03091 0.67 +0.4 3,244,730 + MPMX20_03091 0.77 +1.9 3,244,737 + MPMX20_03091 0.79 +0.5 3,244,798 + +0.0 3,244,798 + +0.8 3,244,806 - +0.2 3,244,806 - -0.2 3,245,048 + MPMX20_03092 0.22 +0.9 3,245,102 - MPMX20_03092 0.30 -1.0 3,245,107 - MPMX20_03092 0.31 -0.8 3,245,167 + MPMX20_03092 0.39 +0.9 3,245,188 + MPMX20_03092 0.42 -1.3 3,245,191 - MPMX20_03092 0.42 +1.7 3,245,195 + MPMX20_03092 0.43 +1.2 3,245,196 - MPMX20_03092 0.43 +0.1 3,245,246 - MPMX20_03092 0.50 +0.5 3,245,287 - MPMX20_03092 0.56 +1.6 3,245,330 + MPMX20_03092 0.62 -1.8 3,245,338 - MPMX20_03092 0.63 -2.5 3,245,390 + MPMX20_03092 0.70 +0.5 3,245,422 - MPMX20_03092 0.74 +0.9 3,245,422 - MPMX20_03092 0.74 +2.0 3,245,461 + MPMX20_03092 0.80 +1.3 3,245,490 - MPMX20_03092 0.84 +2.4 3,245,521 + MPMX20_03092 0.88 -0.7 3,245,535 - -1.8 3,245,605 - -0.1 3,245,605 - +1.4 3,245,635 + +0.9 3,245,650 + -2.2 3,245,725 + -2.9 3,245,741 + -1.7 3,245,752 + +0.9 3,245,766 - -1.6 3,245,829 + MPMX20_03093 0.14 -1.0 3,245,832 - MPMX20_03093 0.14 +2.0 3,245,884 + MPMX20_03093 0.17 -1.2 3,245,884 + MPMX20_03093 0.17 -2.0 3,245,949 + MPMX20_03093 0.21 +1.6 3,245,990 - MPMX20_03093 0.23 +3.4 3,246,061 - MPMX20_03093 0.27 -0.9 3,246,065 - MPMX20_03093 0.27 -0.1 3,246,071 - MPMX20_03093 0.28 -1.3 3,246,076 + MPMX20_03093 0.28 +0.7 3,246,101 + MPMX20_03093 0.30 -0.5 3,246,158 - MPMX20_03093 0.33 -0.5 3,246,201 + MPMX20_03093 0.36 +1.1 3,246,246 - MPMX20_03093 0.38 -0.3 3,246,249 + MPMX20_03093 0.38 +1.7 3,246,267 - MPMX20_03093 0.39 +0.8 3,246,267 - MPMX20_03093 0.39 +0.8 3,246,267 - MPMX20_03093 0.39 -1.2 3,246,272 - MPMX20_03093 0.40 -2.4 3,246,281 - MPMX20_03093 0.40 -2.3 3,246,312 - MPMX20_03093 0.42 +1.7 3,246,350 + MPMX20_03093 0.44 +0.2 3,246,362 + MPMX20_03093 0.45 -0.2 3,246,400 - MPMX20_03093 0.47 -1.4 3,246,459 - MPMX20_03093 0.51 +0.6 3,246,490 - MPMX20_03093 0.53 -2.5 3,246,549 + MPMX20_03093 0.56 +1.2 3,246,554 + MPMX20_03093 0.56 -1.8 3,246,557 - MPMX20_03093 0.57 -0.4 3,246,591 - MPMX20_03093 0.59 -0.3
Or see this region's nucleotide sequence