Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02735 and MPMX20_02736 are separated by 48 nucleotides MPMX20_02736 and MPMX20_02737 are separated by 193 nucleotides
MPMX20_02735: MPMX20_02735 - Riboflavin transporter RibZ, at 2,888,092 to 2,889,465
_02735
MPMX20_02736: MPMX20_02736 - Protease HtpX, at 2,889,514 to 2,890,395
_02736
MPMX20_02737: MPMX20_02737 - Tail-specific protease, at 2,890,589 to 2,892,637
_02737
Position (kb)
2889
2890
2891 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6 at 2888.558 kb on + strand, within MPMX20_02735 at 2888.558 kb on + strand, within MPMX20_02735 at 2888.558 kb on + strand, within MPMX20_02735 at 2888.558 kb on + strand, within MPMX20_02735 at 2888.583 kb on - strand, within MPMX20_02735 at 2888.643 kb on + strand, within MPMX20_02735 at 2888.696 kb on + strand, within MPMX20_02735 at 2888.696 kb on + strand, within MPMX20_02735 at 2888.704 kb on - strand, within MPMX20_02735 at 2888.704 kb on - strand, within MPMX20_02735 at 2888.704 kb on - strand, within MPMX20_02735 at 2888.704 kb on - strand, within MPMX20_02735 at 2888.704 kb on - strand, within MPMX20_02735 at 2888.724 kb on - strand, within MPMX20_02735 at 2888.733 kb on - strand, within MPMX20_02735 at 2888.740 kb on - strand, within MPMX20_02735 at 2888.740 kb on - strand, within MPMX20_02735 at 2888.740 kb on - strand, within MPMX20_02735 at 2888.740 kb on - strand, within MPMX20_02735 at 2888.753 kb on - strand, within MPMX20_02735 at 2888.762 kb on + strand, within MPMX20_02735 at 2888.762 kb on + strand, within MPMX20_02735 at 2888.770 kb on - strand, within MPMX20_02735 at 2888.775 kb on - strand, within MPMX20_02735 at 2888.780 kb on + strand, within MPMX20_02735 at 2888.780 kb on + strand, within MPMX20_02735 at 2888.780 kb on + strand, within MPMX20_02735 at 2888.780 kb on + strand, within MPMX20_02735 at 2888.780 kb on + strand, within MPMX20_02735 at 2888.781 kb on - strand, within MPMX20_02735 at 2888.788 kb on - strand, within MPMX20_02735 at 2888.874 kb on + strand, within MPMX20_02735 at 2888.963 kb on - strand, within MPMX20_02735 at 2888.972 kb on - strand, within MPMX20_02735 at 2888.989 kb on - strand, within MPMX20_02735 at 2889.081 kb on + strand, within MPMX20_02735 at 2889.193 kb on + strand, within MPMX20_02735 at 2889.251 kb on + strand, within MPMX20_02735 at 2889.251 kb on + strand, within MPMX20_02735 at 2889.252 kb on - strand, within MPMX20_02735 at 2889.289 kb on + strand, within MPMX20_02735 at 2889.289 kb on + strand, within MPMX20_02735 at 2889.321 kb on - strand, within MPMX20_02735 at 2889.347 kb on + strand at 2889.437 kb on + strand at 2889.437 kb on + strand at 2889.437 kb on + strand at 2889.445 kb on - strand at 2889.447 kb on + strand at 2889.447 kb on + strand at 2889.447 kb on + strand at 2889.447 kb on + strand at 2889.450 kb on - strand at 2889.452 kb on + strand at 2889.455 kb on - strand at 2889.455 kb on - strand at 2889.460 kb on - strand at 2889.487 kb on - strand at 2889.497 kb on - strand at 2889.533 kb on - strand at 2889.533 kb on - strand at 2889.572 kb on + strand at 2889.720 kb on - strand, within MPMX20_02736 at 2889.738 kb on + strand, within MPMX20_02736 at 2889.761 kb on + strand, within MPMX20_02736 at 2889.827 kb on + strand, within MPMX20_02736 at 2889.888 kb on + strand, within MPMX20_02736 at 2889.934 kb on - strand, within MPMX20_02736 at 2889.936 kb on + strand, within MPMX20_02736 at 2890.135 kb on - strand, within MPMX20_02736 at 2890.178 kb on - strand, within MPMX20_02736 at 2890.206 kb on - strand, within MPMX20_02736 at 2890.265 kb on + strand, within MPMX20_02736 at 2890.281 kb on - strand, within MPMX20_02736 at 2890.296 kb on + strand, within MPMX20_02736 at 2890.414 kb on + strand at 2890.803 kb on + strand, within MPMX20_02737 at 2890.868 kb on - strand, within MPMX20_02737 at 2890.927 kb on + strand, within MPMX20_02737 at 2890.927 kb on + strand, within MPMX20_02737 at 2890.935 kb on - strand, within MPMX20_02737 at 2890.935 kb on - strand, within MPMX20_02737 at 2891.013 kb on - strand, within MPMX20_02737 at 2891.040 kb on - strand, within MPMX20_02737 at 2891.070 kb on + strand, within MPMX20_02737 at 2891.070 kb on + strand, within MPMX20_02737 at 2891.070 kb on + strand, within MPMX20_02737 at 2891.078 kb on - strand, within MPMX20_02737 at 2891.078 kb on - strand, within MPMX20_02737 at 2891.120 kb on + strand, within MPMX20_02737 at 2891.120 kb on + strand, within MPMX20_02737 at 2891.120 kb on + strand, within MPMX20_02737 at 2891.125 kb on + strand, within MPMX20_02737 at 2891.145 kb on - strand, within MPMX20_02737 at 2891.195 kb on - strand, within MPMX20_02737 at 2891.234 kb on - strand, within MPMX20_02737 at 2891.241 kb on + strand, within MPMX20_02737 at 2891.252 kb on - strand, within MPMX20_02737 at 2891.252 kb on - strand, within MPMX20_02737 at 2891.362 kb on - strand, within MPMX20_02737
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2 remove 2,888,558 + MPMX20_02735 0.34 +2.8 2,888,558 + MPMX20_02735 0.34 -2.8 2,888,558 + MPMX20_02735 0.34 +1.0 2,888,558 + MPMX20_02735 0.34 -3.0 2,888,583 - MPMX20_02735 0.36 -0.3 2,888,643 + MPMX20_02735 0.40 -3.1 2,888,696 + MPMX20_02735 0.44 +0.2 2,888,696 + MPMX20_02735 0.44 -2.3 2,888,704 - MPMX20_02735 0.45 -0.7 2,888,704 - MPMX20_02735 0.45 -4.2 2,888,704 - MPMX20_02735 0.45 -0.2 2,888,704 - MPMX20_02735 0.45 -2.7 2,888,704 - MPMX20_02735 0.45 +1.1 2,888,724 - MPMX20_02735 0.46 +0.2 2,888,733 - MPMX20_02735 0.47 +2.5 2,888,740 - MPMX20_02735 0.47 -1.1 2,888,740 - MPMX20_02735 0.47 -0.0 2,888,740 - MPMX20_02735 0.47 +0.0 2,888,740 - MPMX20_02735 0.47 -2.8 2,888,753 - MPMX20_02735 0.48 -2.8 2,888,762 + MPMX20_02735 0.49 +1.0 2,888,762 + MPMX20_02735 0.49 +1.7 2,888,770 - MPMX20_02735 0.49 +1.0 2,888,775 - MPMX20_02735 0.50 +1.0 2,888,780 + MPMX20_02735 0.50 +0.8 2,888,780 + MPMX20_02735 0.50 -1.8 2,888,780 + MPMX20_02735 0.50 +0.9 2,888,780 + MPMX20_02735 0.50 +0.5 2,888,780 + MPMX20_02735 0.50 -1.8 2,888,781 - MPMX20_02735 0.50 +6.4 2,888,788 - MPMX20_02735 0.51 +0.7 2,888,874 + MPMX20_02735 0.57 +0.6 2,888,963 - MPMX20_02735 0.63 -2.0 2,888,972 - MPMX20_02735 0.64 +2.5 2,888,989 - MPMX20_02735 0.65 +0.7 2,889,081 + MPMX20_02735 0.72 -2.3 2,889,193 + MPMX20_02735 0.80 +0.4 2,889,251 + MPMX20_02735 0.84 +1.0 2,889,251 + MPMX20_02735 0.84 -3.0 2,889,252 - MPMX20_02735 0.84 -0.2 2,889,289 + MPMX20_02735 0.87 +0.5 2,889,289 + MPMX20_02735 0.87 -1.4 2,889,321 - MPMX20_02735 0.89 +1.4 2,889,347 + +0.4 2,889,437 + +0.8 2,889,437 + -0.4 2,889,437 + +3.3 2,889,445 - +1.3 2,889,447 + +3.7 2,889,447 + +1.1 2,889,447 + +0.0 2,889,447 + -2.0 2,889,450 - -1.8 2,889,452 + -1.7 2,889,455 - -1.3 2,889,455 - -1.9 2,889,460 - +0.6 2,889,487 - -1.8 2,889,497 - -0.5 2,889,533 - +0.2 2,889,533 - +1.5 2,889,572 + -2.0 2,889,720 - MPMX20_02736 0.23 +1.0 2,889,738 + MPMX20_02736 0.25 -3.2 2,889,761 + MPMX20_02736 0.28 +2.5 2,889,827 + MPMX20_02736 0.35 -0.3 2,889,888 + MPMX20_02736 0.42 -0.7 2,889,934 - MPMX20_02736 0.48 -2.7 2,889,936 + MPMX20_02736 0.48 -2.4 2,890,135 - MPMX20_02736 0.70 -1.2 2,890,178 - MPMX20_02736 0.75 -1.5 2,890,206 - MPMX20_02736 0.78 -0.1 2,890,265 + MPMX20_02736 0.85 -2.4 2,890,281 - MPMX20_02736 0.87 -1.8 2,890,296 + MPMX20_02736 0.89 -1.1 2,890,414 + +0.2 2,890,803 + MPMX20_02737 0.10 -3.6 2,890,868 - MPMX20_02737 0.14 +0.7 2,890,927 + MPMX20_02737 0.16 -2.6 2,890,927 + MPMX20_02737 0.16 -1.2 2,890,935 - MPMX20_02737 0.17 -0.4 2,890,935 - MPMX20_02737 0.17 -2.3 2,891,013 - MPMX20_02737 0.21 -3.2 2,891,040 - MPMX20_02737 0.22 +3.3 2,891,070 + MPMX20_02737 0.23 +0.2 2,891,070 + MPMX20_02737 0.23 -1.8 2,891,070 + MPMX20_02737 0.23 -0.1 2,891,078 - MPMX20_02737 0.24 -2.8 2,891,078 - MPMX20_02737 0.24 +1.2 2,891,120 + MPMX20_02737 0.26 +0.7 2,891,120 + MPMX20_02737 0.26 -2.5 2,891,120 + MPMX20_02737 0.26 -0.1 2,891,125 + MPMX20_02737 0.26 -0.7 2,891,145 - MPMX20_02737 0.27 -3.4 2,891,195 - MPMX20_02737 0.30 -0.1 2,891,234 - MPMX20_02737 0.31 +0.4 2,891,241 + MPMX20_02737 0.32 -0.3 2,891,252 - MPMX20_02737 0.32 -2.3 2,891,252 - MPMX20_02737 0.32 -0.3 2,891,362 - MPMX20_02737 0.38 -1.9
Or see this region's nucleotide sequence