Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02149 and MPMX20_02150 overlap by 11 nucleotides MPMX20_02150 and MPMX20_02151 overlap by 1 nucleotides MPMX20_02151 and MPMX20_02152 are separated by 26 nucleotides
MPMX20_02149: MPMX20_02149 - 3-hydroxyadipyl-CoA dehydrogenase, at 2,241,010 to 2,242,437
_02149
MPMX20_02150: MPMX20_02150 - Acyl-coenzyme A thioesterase PaaI, at 2,242,427 to 2,242,849
_02150
MPMX20_02151: MPMX20_02151 - 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase, at 2,242,849 to 2,244,054
_02151
MPMX20_02152: MPMX20_02152 - Phenylacetate-coenzyme A ligase, at 2,244,081 to 2,245,397
_02152
Position (kb)
2242
2243
2244
2245 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2241.869 kb on + strand, within MPMX20_02149 at 2241.919 kb on - strand, within MPMX20_02149 at 2242.087 kb on - strand, within MPMX20_02149 at 2242.257 kb on - strand, within MPMX20_02149 at 2242.307 kb on - strand at 2242.367 kb on - strand at 2242.383 kb on + strand at 2242.388 kb on + strand at 2242.419 kb on + strand at 2242.419 kb on - strand at 2242.419 kb on - strand at 2242.453 kb on - strand at 2242.634 kb on + strand, within MPMX20_02150 at 2242.635 kb on + strand, within MPMX20_02150 at 2242.655 kb on + strand, within MPMX20_02150 at 2242.723 kb on + strand, within MPMX20_02150 at 2242.731 kb on - strand, within MPMX20_02150 at 2242.759 kb on - strand, within MPMX20_02150 at 2242.838 kb on + strand at 2242.914 kb on - strand at 2242.937 kb on + strand at 2242.950 kb on - strand at 2243.087 kb on - strand, within MPMX20_02151 at 2243.097 kb on - strand, within MPMX20_02151 at 2243.120 kb on + strand, within MPMX20_02151 at 2243.128 kb on - strand, within MPMX20_02151 at 2243.154 kb on + strand, within MPMX20_02151 at 2243.229 kb on + strand, within MPMX20_02151 at 2243.237 kb on - strand, within MPMX20_02151 at 2243.286 kb on - strand, within MPMX20_02151 at 2243.423 kb on + strand, within MPMX20_02151 at 2243.526 kb on - strand, within MPMX20_02151 at 2243.548 kb on - strand, within MPMX20_02151 at 2243.606 kb on + strand, within MPMX20_02151 at 2243.606 kb on + strand, within MPMX20_02151 at 2243.614 kb on - strand, within MPMX20_02151 at 2243.666 kb on + strand, within MPMX20_02151 at 2243.672 kb on + strand, within MPMX20_02151 at 2243.680 kb on - strand, within MPMX20_02151 at 2243.733 kb on - strand, within MPMX20_02151 at 2243.743 kb on - strand, within MPMX20_02151 at 2243.743 kb on - strand, within MPMX20_02151 at 2243.804 kb on + strand, within MPMX20_02151 at 2243.883 kb on + strand, within MPMX20_02151 at 2243.941 kb on + strand at 2243.946 kb on + strand at 2243.987 kb on + strand at 2244.002 kb on - strand at 2244.005 kb on - strand at 2244.006 kb on + strand at 2244.006 kb on + strand at 2244.013 kb on + strand at 2244.019 kb on + strand at 2244.019 kb on + strand at 2244.019 kb on + strand at 2244.019 kb on + strand at 2244.027 kb on - strand at 2244.027 kb on - strand at 2244.027 kb on - strand at 2244.105 kb on - strand at 2244.130 kb on + strand at 2244.170 kb on + strand at 2244.178 kb on - strand at 2244.229 kb on + strand, within MPMX20_02152 at 2244.277 kb on + strand, within MPMX20_02152 at 2244.283 kb on + strand, within MPMX20_02152 at 2244.283 kb on + strand, within MPMX20_02152 at 2244.285 kb on - strand, within MPMX20_02152 at 2244.285 kb on - strand, within MPMX20_02152 at 2244.285 kb on - strand, within MPMX20_02152 at 2244.290 kb on - strand, within MPMX20_02152 at 2244.291 kb on - strand, within MPMX20_02152 at 2244.291 kb on - strand, within MPMX20_02152 at 2244.346 kb on - strand, within MPMX20_02152 at 2244.348 kb on + strand, within MPMX20_02152 at 2244.367 kb on + strand, within MPMX20_02152 at 2244.377 kb on + strand, within MPMX20_02152 at 2244.391 kb on + strand, within MPMX20_02152 at 2244.418 kb on + strand, within MPMX20_02152 at 2244.439 kb on - strand, within MPMX20_02152 at 2244.508 kb on - strand, within MPMX20_02152 at 2244.508 kb on - strand, within MPMX20_02152 at 2244.524 kb on + strand, within MPMX20_02152 at 2244.643 kb on + strand, within MPMX20_02152 at 2244.674 kb on + strand, within MPMX20_02152 at 2244.806 kb on + strand, within MPMX20_02152 at 2244.947 kb on - strand, within MPMX20_02152 at 2244.949 kb on - strand, within MPMX20_02152 at 2244.956 kb on + strand, within MPMX20_02152 at 2244.964 kb on - strand, within MPMX20_02152 at 2244.999 kb on - strand, within MPMX20_02152 at 2245.021 kb on - strand, within MPMX20_02152 at 2245.021 kb on - strand, within MPMX20_02152
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2 remove 2,241,869 + MPMX20_02149 0.60 -0.4 2,241,919 - MPMX20_02149 0.64 -1.6 2,242,087 - MPMX20_02149 0.75 -1.9 2,242,257 - MPMX20_02149 0.87 -0.4 2,242,307 - -3.0 2,242,367 - -1.7 2,242,383 + -1.3 2,242,388 + +0.5 2,242,419 + -0.3 2,242,419 - -0.0 2,242,419 - -1.1 2,242,453 - -1.7 2,242,634 + MPMX20_02150 0.49 -2.6 2,242,635 + MPMX20_02150 0.49 -3.0 2,242,655 + MPMX20_02150 0.54 -0.3 2,242,723 + MPMX20_02150 0.70 +0.6 2,242,731 - MPMX20_02150 0.72 +1.6 2,242,759 - MPMX20_02150 0.78 -0.0 2,242,838 + -0.0 2,242,914 - +1.1 2,242,937 + +1.1 2,242,950 - -2.1 2,243,087 - MPMX20_02151 0.20 +0.2 2,243,097 - MPMX20_02151 0.21 -1.9 2,243,120 + MPMX20_02151 0.22 -3.6 2,243,128 - MPMX20_02151 0.23 +0.1 2,243,154 + MPMX20_02151 0.25 -0.4 2,243,229 + MPMX20_02151 0.32 -1.7 2,243,237 - MPMX20_02151 0.32 -0.4 2,243,286 - MPMX20_02151 0.36 -1.0 2,243,423 + MPMX20_02151 0.48 +0.3 2,243,526 - MPMX20_02151 0.56 -1.9 2,243,548 - MPMX20_02151 0.58 +1.0 2,243,606 + MPMX20_02151 0.63 -2.1 2,243,606 + MPMX20_02151 0.63 -0.4 2,243,614 - MPMX20_02151 0.63 -1.2 2,243,666 + MPMX20_02151 0.68 +1.0 2,243,672 + MPMX20_02151 0.68 -0.6 2,243,680 - MPMX20_02151 0.69 +2.2 2,243,733 - MPMX20_02151 0.73 -2.9 2,243,743 - MPMX20_02151 0.74 -0.7 2,243,743 - MPMX20_02151 0.74 +2.6 2,243,804 + MPMX20_02151 0.79 -2.0 2,243,883 + MPMX20_02151 0.86 -0.6 2,243,941 + -1.7 2,243,946 + -3.2 2,243,987 + -0.9 2,244,002 - -2.2 2,244,005 - +1.1 2,244,006 + -3.3 2,244,006 + -2.1 2,244,013 + -2.0 2,244,019 + +1.1 2,244,019 + -2.7 2,244,019 + -1.1 2,244,019 + -0.4 2,244,027 - -1.1 2,244,027 - -1.5 2,244,027 - -2.7 2,244,105 - -1.0 2,244,130 + -1.9 2,244,170 + -0.9 2,244,178 - -2.4 2,244,229 + MPMX20_02152 0.11 -0.2 2,244,277 + MPMX20_02152 0.15 +1.3 2,244,283 + MPMX20_02152 0.15 -0.2 2,244,283 + MPMX20_02152 0.15 -3.0 2,244,285 - MPMX20_02152 0.15 -0.7 2,244,285 - MPMX20_02152 0.15 -0.7 2,244,285 - MPMX20_02152 0.15 +2.4 2,244,290 - MPMX20_02152 0.16 -1.3 2,244,291 - MPMX20_02152 0.16 -0.6 2,244,291 - MPMX20_02152 0.16 -0.2 2,244,346 - MPMX20_02152 0.20 -0.6 2,244,348 + MPMX20_02152 0.20 -2.7 2,244,367 + MPMX20_02152 0.22 +0.7 2,244,377 + MPMX20_02152 0.22 -1.2 2,244,391 + MPMX20_02152 0.24 -1.5 2,244,418 + MPMX20_02152 0.26 -0.3 2,244,439 - MPMX20_02152 0.27 -2.1 2,244,508 - MPMX20_02152 0.32 -2.1 2,244,508 - MPMX20_02152 0.32 -2.1 2,244,524 + MPMX20_02152 0.34 -1.0 2,244,643 + MPMX20_02152 0.43 +2.6 2,244,674 + MPMX20_02152 0.45 -2.9 2,244,806 + MPMX20_02152 0.55 -0.4 2,244,947 - MPMX20_02152 0.66 -2.5 2,244,949 - MPMX20_02152 0.66 -0.6 2,244,956 + MPMX20_02152 0.66 +0.2 2,244,964 - MPMX20_02152 0.67 +0.3 2,244,999 - MPMX20_02152 0.70 +1.1 2,245,021 - MPMX20_02152 0.71 -1.8 2,245,021 - MPMX20_02152 0.71 -0.0
Or see this region's nucleotide sequence