Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02147 and MPMX20_02148 are separated by 2 nucleotides MPMX20_02148 and MPMX20_02149 are separated by 1 nucleotides MPMX20_02149 and MPMX20_02150 overlap by 11 nucleotides MPMX20_02150 and MPMX20_02151 overlap by 1 nucleotides
MPMX20_02147: MPMX20_02147 - 2,3-dehydroadipyl-CoA hydratase, at 2,239,453 to 2,240,220
_02147
MPMX20_02148: MPMX20_02148 - 1,2-epoxyphenylacetyl-CoA isomerase, at 2,240,223 to 2,241,008
_02148
MPMX20_02149: MPMX20_02149 - 3-hydroxyadipyl-CoA dehydrogenase, at 2,241,010 to 2,242,437
_02149
MPMX20_02150: MPMX20_02150 - Acyl-coenzyme A thioesterase PaaI, at 2,242,427 to 2,242,849
_02150
MPMX20_02151: MPMX20_02151 - 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase, at 2,242,849 to 2,244,054
_02151
Position (kb)
2241
2242
2243 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2240.037 kb on - strand, within MPMX20_02147 at 2240.048 kb on - strand, within MPMX20_02147 at 2240.116 kb on + strand, within MPMX20_02147 at 2240.116 kb on + strand, within MPMX20_02147 at 2240.116 kb on + strand, within MPMX20_02147 at 2240.124 kb on - strand, within MPMX20_02147 at 2240.130 kb on + strand, within MPMX20_02147 at 2240.142 kb on + strand, within MPMX20_02147 at 2240.160 kb on - strand at 2240.271 kb on - strand at 2240.276 kb on - strand at 2240.359 kb on - strand, within MPMX20_02148 at 2240.563 kb on - strand, within MPMX20_02148 at 2240.568 kb on - strand, within MPMX20_02148 at 2240.596 kb on - strand, within MPMX20_02148 at 2240.622 kb on + strand, within MPMX20_02148 at 2240.664 kb on - strand, within MPMX20_02148 at 2240.706 kb on - strand, within MPMX20_02148 at 2240.711 kb on - strand, within MPMX20_02148 at 2240.741 kb on + strand, within MPMX20_02148 at 2240.761 kb on + strand, within MPMX20_02148 at 2240.768 kb on + strand, within MPMX20_02148 at 2240.812 kb on - strand, within MPMX20_02148 at 2240.836 kb on + strand, within MPMX20_02148 at 2240.839 kb on - strand, within MPMX20_02148 at 2240.844 kb on - strand, within MPMX20_02148 at 2240.844 kb on - strand, within MPMX20_02148 at 2240.844 kb on - strand, within MPMX20_02148 at 2240.887 kb on - strand, within MPMX20_02148 at 2240.960 kb on + strand at 2240.976 kb on + strand at 2241.351 kb on - strand, within MPMX20_02149 at 2241.351 kb on - strand, within MPMX20_02149 at 2241.565 kb on + strand, within MPMX20_02149 at 2241.566 kb on + strand, within MPMX20_02149 at 2241.574 kb on - strand, within MPMX20_02149 at 2241.605 kb on + strand, within MPMX20_02149 at 2241.631 kb on - strand, within MPMX20_02149 at 2241.706 kb on - strand, within MPMX20_02149 at 2241.754 kb on - strand, within MPMX20_02149 at 2241.869 kb on + strand, within MPMX20_02149 at 2241.919 kb on - strand, within MPMX20_02149 at 2242.087 kb on - strand, within MPMX20_02149 at 2242.257 kb on - strand, within MPMX20_02149 at 2242.307 kb on - strand at 2242.367 kb on - strand at 2242.383 kb on + strand at 2242.388 kb on + strand at 2242.419 kb on + strand at 2242.419 kb on - strand at 2242.419 kb on - strand at 2242.453 kb on - strand at 2242.634 kb on + strand, within MPMX20_02150 at 2242.635 kb on + strand, within MPMX20_02150 at 2242.655 kb on + strand, within MPMX20_02150 at 2242.723 kb on + strand, within MPMX20_02150 at 2242.731 kb on - strand, within MPMX20_02150 at 2242.759 kb on - strand, within MPMX20_02150 at 2242.838 kb on + strand at 2242.914 kb on - strand at 2242.937 kb on + strand at 2242.950 kb on - strand at 2243.087 kb on - strand, within MPMX20_02151 at 2243.097 kb on - strand, within MPMX20_02151 at 2243.120 kb on + strand, within MPMX20_02151 at 2243.128 kb on - strand, within MPMX20_02151 at 2243.154 kb on + strand, within MPMX20_02151 at 2243.229 kb on + strand, within MPMX20_02151 at 2243.237 kb on - strand, within MPMX20_02151 at 2243.286 kb on - strand, within MPMX20_02151
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2 remove 2,240,037 - MPMX20_02147 0.76 -0.6 2,240,048 - MPMX20_02147 0.77 -3.3 2,240,116 + MPMX20_02147 0.86 -2.9 2,240,116 + MPMX20_02147 0.86 -2.9 2,240,116 + MPMX20_02147 0.86 -2.9 2,240,124 - MPMX20_02147 0.87 -2.0 2,240,130 + MPMX20_02147 0.88 -3.1 2,240,142 + MPMX20_02147 0.90 -0.8 2,240,160 - -0.0 2,240,271 - -0.4 2,240,276 - -2.8 2,240,359 - MPMX20_02148 0.17 -2.0 2,240,563 - MPMX20_02148 0.43 -2.2 2,240,568 - MPMX20_02148 0.44 -1.1 2,240,596 - MPMX20_02148 0.47 -1.4 2,240,622 + MPMX20_02148 0.51 -0.2 2,240,664 - MPMX20_02148 0.56 -1.7 2,240,706 - MPMX20_02148 0.61 +0.3 2,240,711 - MPMX20_02148 0.62 +3.8 2,240,741 + MPMX20_02148 0.66 -1.9 2,240,761 + MPMX20_02148 0.68 -1.1 2,240,768 + MPMX20_02148 0.69 -2.3 2,240,812 - MPMX20_02148 0.75 +2.0 2,240,836 + MPMX20_02148 0.78 -2.7 2,240,839 - MPMX20_02148 0.78 -1.5 2,240,844 - MPMX20_02148 0.79 +0.5 2,240,844 - MPMX20_02148 0.79 -1.8 2,240,844 - MPMX20_02148 0.79 -1.7 2,240,887 - MPMX20_02148 0.84 -0.6 2,240,960 + -2.0 2,240,976 + -3.6 2,241,351 - MPMX20_02149 0.24 -2.1 2,241,351 - MPMX20_02149 0.24 -0.2 2,241,565 + MPMX20_02149 0.39 -2.3 2,241,566 + MPMX20_02149 0.39 -0.4 2,241,574 - MPMX20_02149 0.39 -0.6 2,241,605 + MPMX20_02149 0.42 -3.6 2,241,631 - MPMX20_02149 0.43 -0.6 2,241,706 - MPMX20_02149 0.49 -0.2 2,241,754 - MPMX20_02149 0.52 +0.2 2,241,869 + MPMX20_02149 0.60 -0.4 2,241,919 - MPMX20_02149 0.64 -1.7 2,242,087 - MPMX20_02149 0.75 -1.9 2,242,257 - MPMX20_02149 0.87 -0.5 2,242,307 - -3.1 2,242,367 - -1.7 2,242,383 + -1.3 2,242,388 + +0.5 2,242,419 + -0.3 2,242,419 - -0.0 2,242,419 - -1.1 2,242,453 - -1.8 2,242,634 + MPMX20_02150 0.49 -2.6 2,242,635 + MPMX20_02150 0.49 -3.0 2,242,655 + MPMX20_02150 0.54 -0.3 2,242,723 + MPMX20_02150 0.70 +0.6 2,242,731 - MPMX20_02150 0.72 +1.6 2,242,759 - MPMX20_02150 0.78 -0.0 2,242,838 + -0.0 2,242,914 - +1.1 2,242,937 + +1.1 2,242,950 - -2.1 2,243,087 - MPMX20_02151 0.20 +0.2 2,243,097 - MPMX20_02151 0.21 -1.9 2,243,120 + MPMX20_02151 0.22 -3.7 2,243,128 - MPMX20_02151 0.23 +0.1 2,243,154 + MPMX20_02151 0.25 -0.4 2,243,229 + MPMX20_02151 0.32 -1.8 2,243,237 - MPMX20_02151 0.32 -0.4 2,243,286 - MPMX20_02151 0.36 -1.0
Or see this region's nucleotide sequence