Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02057 and MPMX20_02058 are separated by 335 nucleotides MPMX20_02058 and MPMX20_02059 are separated by 189 nucleotides
MPMX20_02057: MPMX20_02057 - hypothetical protein, at 2,150,853 to 2,151,674
_02057
MPMX20_02058: MPMX20_02058 - hypothetical protein, at 2,152,010 to 2,152,330
_02058
MPMX20_02059: MPMX20_02059 - Thermostable carboxypeptidase 1, at 2,152,520 to 2,154,007
_02059
Position (kb)
2152
2153 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2151.177 kb on - strand, within MPMX20_02057 at 2151.177 kb on - strand, within MPMX20_02057 at 2151.217 kb on - strand, within MPMX20_02057 at 2151.276 kb on - strand, within MPMX20_02057 at 2151.286 kb on + strand, within MPMX20_02057 at 2151.311 kb on + strand, within MPMX20_02057 at 2151.321 kb on + strand, within MPMX20_02057 at 2151.323 kb on + strand, within MPMX20_02057 at 2151.433 kb on - strand, within MPMX20_02057 at 2151.461 kb on - strand, within MPMX20_02057 at 2151.461 kb on - strand, within MPMX20_02057 at 2151.591 kb on + strand, within MPMX20_02057 at 2151.648 kb on - strand at 2151.651 kb on - strand at 2151.667 kb on - strand at 2151.673 kb on + strand at 2151.688 kb on - strand at 2151.741 kb on - strand at 2151.743 kb on + strand at 2151.743 kb on + strand at 2151.743 kb on + strand at 2151.751 kb on - strand at 2151.751 kb on - strand at 2151.805 kb on + strand at 2151.836 kb on + strand at 2151.857 kb on + strand at 2151.865 kb on - strand at 2151.865 kb on - strand at 2151.930 kb on - strand at 2151.944 kb on - strand at 2152.022 kb on + strand at 2152.036 kb on + strand at 2152.044 kb on - strand, within MPMX20_02058 at 2152.044 kb on - strand, within MPMX20_02058 at 2152.185 kb on + strand, within MPMX20_02058 at 2152.193 kb on - strand, within MPMX20_02058 at 2152.193 kb on - strand, within MPMX20_02058 at 2152.290 kb on + strand, within MPMX20_02058 at 2152.295 kb on + strand, within MPMX20_02058 at 2152.295 kb on + strand, within MPMX20_02058 at 2152.298 kb on - strand, within MPMX20_02058 at 2152.302 kb on + strand at 2152.303 kb on - strand at 2152.303 kb on - strand at 2152.306 kb on + strand at 2152.327 kb on - strand at 2152.400 kb on + strand at 2152.400 kb on + strand at 2152.464 kb on - strand at 2152.465 kb on + strand at 2152.469 kb on + strand at 2152.469 kb on + strand at 2152.473 kb on - strand at 2152.576 kb on - strand at 2152.602 kb on - strand at 2152.626 kb on + strand at 2152.639 kb on - strand at 2152.694 kb on - strand, within MPMX20_02059 at 2152.739 kb on - strand, within MPMX20_02059 at 2152.798 kb on + strand, within MPMX20_02059 at 2152.839 kb on + strand, within MPMX20_02059 at 2152.844 kb on + strand, within MPMX20_02059 at 2152.844 kb on + strand, within MPMX20_02059 at 2152.896 kb on + strand, within MPMX20_02059 at 2152.981 kb on - strand, within MPMX20_02059 at 2152.981 kb on - strand, within MPMX20_02059 at 2152.996 kb on + strand, within MPMX20_02059 at 2153.004 kb on - strand, within MPMX20_02059 at 2153.004 kb on - strand, within MPMX20_02059 at 2153.004 kb on - strand, within MPMX20_02059 at 2153.037 kb on - strand, within MPMX20_02059 at 2153.063 kb on + strand, within MPMX20_02059 at 2153.092 kb on + strand, within MPMX20_02059 at 2153.145 kb on - strand, within MPMX20_02059 at 2153.223 kb on + strand, within MPMX20_02059 at 2153.231 kb on - strand, within MPMX20_02059 at 2153.245 kb on - strand, within MPMX20_02059 at 2153.280 kb on + strand, within MPMX20_02059 at 2153.305 kb on + strand, within MPMX20_02059 at 2153.305 kb on + strand, within MPMX20_02059 at 2153.313 kb on - strand, within MPMX20_02059
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2 remove 2,151,177 - MPMX20_02057 0.39 -0.6 2,151,177 - MPMX20_02057 0.39 -1.8 2,151,217 - MPMX20_02057 0.44 +0.8 2,151,276 - MPMX20_02057 0.51 -0.6 2,151,286 + MPMX20_02057 0.53 -2.5 2,151,311 + MPMX20_02057 0.56 -0.8 2,151,321 + MPMX20_02057 0.57 +1.1 2,151,323 + MPMX20_02057 0.57 -2.0 2,151,433 - MPMX20_02057 0.71 +3.9 2,151,461 - MPMX20_02057 0.74 -2.0 2,151,461 - MPMX20_02057 0.74 -1.7 2,151,591 + MPMX20_02057 0.90 -2.0 2,151,648 - +1.8 2,151,651 - -0.6 2,151,667 - -1.3 2,151,673 + -0.5 2,151,688 - +1.2 2,151,741 - -1.3 2,151,743 + -0.5 2,151,743 + -1.9 2,151,743 + -1.5 2,151,751 - -0.3 2,151,751 - +2.5 2,151,805 + -0.9 2,151,836 + -0.7 2,151,857 + +1.5 2,151,865 - -2.4 2,151,865 - +2.3 2,151,930 - +0.6 2,151,944 - -0.2 2,152,022 + -1.7 2,152,036 + -1.3 2,152,044 - MPMX20_02058 0.11 -2.9 2,152,044 - MPMX20_02058 0.11 +0.2 2,152,185 + MPMX20_02058 0.55 -2.0 2,152,193 - MPMX20_02058 0.57 -2.9 2,152,193 - MPMX20_02058 0.57 -0.0 2,152,290 + MPMX20_02058 0.87 -3.0 2,152,295 + MPMX20_02058 0.89 -2.9 2,152,295 + MPMX20_02058 0.89 -2.8 2,152,298 - MPMX20_02058 0.90 -1.5 2,152,302 + -1.2 2,152,303 - +1.6 2,152,303 - +0.8 2,152,306 + -1.5 2,152,327 - +0.7 2,152,400 + -1.2 2,152,400 + +0.2 2,152,464 - +0.2 2,152,465 + -0.6 2,152,469 + +1.0 2,152,469 + -3.4 2,152,473 - +0.5 2,152,576 - -1.5 2,152,602 - +1.1 2,152,626 + +3.1 2,152,639 - +0.4 2,152,694 - MPMX20_02059 0.12 -0.9 2,152,739 - MPMX20_02059 0.15 -0.0 2,152,798 + MPMX20_02059 0.19 -1.1 2,152,839 + MPMX20_02059 0.21 -2.3 2,152,844 + MPMX20_02059 0.22 -1.4 2,152,844 + MPMX20_02059 0.22 -2.9 2,152,896 + MPMX20_02059 0.25 +0.1 2,152,981 - MPMX20_02059 0.31 -0.0 2,152,981 - MPMX20_02059 0.31 +1.0 2,152,996 + MPMX20_02059 0.32 -1.1 2,153,004 - MPMX20_02059 0.33 +0.6 2,153,004 - MPMX20_02059 0.33 +1.0 2,153,004 - MPMX20_02059 0.33 +0.6 2,153,037 - MPMX20_02059 0.35 +0.3 2,153,063 + MPMX20_02059 0.36 +1.1 2,153,092 + MPMX20_02059 0.38 -2.4 2,153,145 - MPMX20_02059 0.42 -0.5 2,153,223 + MPMX20_02059 0.47 -2.7 2,153,231 - MPMX20_02059 0.48 -1.0 2,153,245 - MPMX20_02059 0.49 -1.3 2,153,280 + MPMX20_02059 0.51 -2.4 2,153,305 + MPMX20_02059 0.53 +2.7 2,153,305 + MPMX20_02059 0.53 -2.1 2,153,313 - MPMX20_02059 0.53 +1.4
Or see this region's nucleotide sequence