Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00433

Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00432 and MPMX20_00433 are separated by 132 nucleotidesMPMX20_00433 and MPMX20_00434 are separated by 29 nucleotidesMPMX20_00434 and MPMX20_00435 are separated by 10 nucleotidesMPMX20_00435 and MPMX20_00436 are separated by 10 nucleotides MPMX20_00432: MPMX20_00432 - Beta-lactamase, at 445,366 to 446,511 _00432 MPMX20_00433: MPMX20_00433 - HTH-type transcriptional activator AmpR, at 446,644 to 447,519 _00433 MPMX20_00434: MPMX20_00434 - Fumarate reductase subunit D, at 447,549 to 447,908 _00434 MPMX20_00435: MPMX20_00435 - Fumarate reductase subunit C, at 447,919 to 448,314 _00435 MPMX20_00436: MPMX20_00436 - Fumarate reductase iron-sulfur subunit, at 448,325 to 449,059 _00436 Position (kb) 446 447 448Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 445.650 kb on - strand, within MPMX20_00432at 445.650 kb on - strand, within MPMX20_00432at 445.650 kb on - strand, within MPMX20_00432at 445.665 kb on - strand, within MPMX20_00432at 445.702 kb on - strand, within MPMX20_00432at 445.702 kb on - strand, within MPMX20_00432at 445.760 kb on + strand, within MPMX20_00432at 445.768 kb on - strand, within MPMX20_00432at 445.841 kb on + strand, within MPMX20_00432at 445.849 kb on - strand, within MPMX20_00432at 445.849 kb on - strand, within MPMX20_00432at 445.855 kb on - strand, within MPMX20_00432at 445.855 kb on - strand, within MPMX20_00432at 445.861 kb on - strand, within MPMX20_00432at 445.861 kb on - strand, within MPMX20_00432at 445.865 kb on + strand, within MPMX20_00432at 445.880 kb on + strand, within MPMX20_00432at 445.905 kb on - strand, within MPMX20_00432at 445.910 kb on - strand, within MPMX20_00432at 445.936 kb on - strand, within MPMX20_00432at 445.973 kb on + strand, within MPMX20_00432at 445.973 kb on + strand, within MPMX20_00432at 445.973 kb on + strand, within MPMX20_00432at 445.981 kb on - strand, within MPMX20_00432at 445.981 kb on - strand, within MPMX20_00432at 446.112 kb on + strand, within MPMX20_00432at 446.135 kb on - strand, within MPMX20_00432at 446.166 kb on + strand, within MPMX20_00432at 446.166 kb on + strand, within MPMX20_00432at 446.169 kb on - strand, within MPMX20_00432at 446.174 kb on - strand, within MPMX20_00432at 446.174 kb on - strand, within MPMX20_00432at 446.184 kb on - strand, within MPMX20_00432at 446.297 kb on - strand, within MPMX20_00432at 446.302 kb on + strand, within MPMX20_00432at 446.302 kb on - strand, within MPMX20_00432at 446.343 kb on + strand, within MPMX20_00432at 446.351 kb on - strand, within MPMX20_00432at 446.420 kb on + strandat 446.428 kb on - strandat 446.452 kb on + strandat 446.452 kb on + strandat 446.452 kb on + strandat 446.460 kb on - strandat 446.460 kb on - strandat 446.471 kb on + strandat 446.533 kb on + strandat 446.541 kb on - strandat 446.541 kb on - strandat 446.541 kb on - strandat 446.541 kb on - strandat 446.559 kb on + strandat 446.771 kb on - strand, within MPMX20_00433at 446.779 kb on - strand, within MPMX20_00433at 446.782 kb on + strand, within MPMX20_00433at 446.790 kb on - strand, within MPMX20_00433at 446.790 kb on - strand, within MPMX20_00433at 446.790 kb on - strand, within MPMX20_00433at 446.819 kb on + strand, within MPMX20_00433at 446.819 kb on + strand, within MPMX20_00433at 446.819 kb on + strand, within MPMX20_00433at 446.827 kb on - strand, within MPMX20_00433at 446.893 kb on + strand, within MPMX20_00433at 447.008 kb on + strand, within MPMX20_00433at 447.009 kb on + strand, within MPMX20_00433at 447.074 kb on - strand, within MPMX20_00433at 447.074 kb on - strand, within MPMX20_00433at 447.084 kb on + strand, within MPMX20_00433at 447.086 kb on + strand, within MPMX20_00433at 447.094 kb on - strand, within MPMX20_00433at 447.117 kb on - strand, within MPMX20_00433at 447.128 kb on - strand, within MPMX20_00433at 447.147 kb on + strand, within MPMX20_00433at 447.197 kb on + strand, within MPMX20_00433at 447.205 kb on + strand, within MPMX20_00433at 447.207 kb on + strand, within MPMX20_00433at 447.246 kb on - strand, within MPMX20_00433at 447.272 kb on + strand, within MPMX20_00433at 447.292 kb on + strand, within MPMX20_00433at 447.378 kb on + strand, within MPMX20_00433at 447.424 kb on - strand, within MPMX20_00433at 447.475 kb on - strandat 447.546 kb on - strandat 447.572 kb on + strandat 447.666 kb on + strand, within MPMX20_00434at 447.666 kb on + strand, within MPMX20_00434at 447.671 kb on + strand, within MPMX20_00434at 447.671 kb on + strand, within MPMX20_00434at 447.671 kb on + strand, within MPMX20_00434at 447.671 kb on + strand, within MPMX20_00434at 447.676 kb on + strand, within MPMX20_00434at 447.679 kb on - strand, within MPMX20_00434at 447.679 kb on - strand, within MPMX20_00434at 447.681 kb on - strand, within MPMX20_00434at 447.713 kb on - strand, within MPMX20_00434at 447.746 kb on - strand, within MPMX20_00434at 447.746 kb on - strand, within MPMX20_00434at 447.747 kb on - strand, within MPMX20_00434at 447.777 kb on - strand, within MPMX20_00434at 447.799 kb on - strand, within MPMX20_00434at 447.799 kb on - strand, within MPMX20_00434at 447.799 kb on - strand, within MPMX20_00434at 447.799 kb on - strand, within MPMX20_00434at 447.850 kb on + strand, within MPMX20_00434at 447.850 kb on + strand, within MPMX20_00434at 447.903 kb on + strandat 447.906 kb on - strandat 447.910 kb on + strandat 447.910 kb on + strandat 447.915 kb on + strandat 447.920 kb on + strandat 447.920 kb on + strandat 447.920 kb on + strandat 447.922 kb on - strandat 447.923 kb on - strandat 447.928 kb on - strandat 447.928 kb on - strandat 447.928 kb on - strandat 447.940 kb on + strandat 448.137 kb on + strand, within MPMX20_00435at 448.186 kb on - strand, within MPMX20_00435at 448.194 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.241 kb on - strand, within MPMX20_00435at 448.241 kb on - strand, within MPMX20_00435at 448.241 kb on - strand, within MPMX20_00435at 448.278 kb on - strandat 448.296 kb on - strandat 448.333 kb on + strandat 448.333 kb on + strandat 448.379 kb on - strandat 448.379 kb on - strandat 448.389 kb on - strandat 448.420 kb on + strand, within MPMX20_00436at 448.428 kb on - strand, within MPMX20_00436at 448.468 kb on - strand, within MPMX20_00436at 448.501 kb on + strand, within MPMX20_00436at 448.511 kb on + strand, within MPMX20_00436at 448.516 kb on + strand, within MPMX20_00436

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
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445,650 - MPMX20_00432 0.25 +0.3
445,650 - MPMX20_00432 0.25 -3.3
445,650 - MPMX20_00432 0.25 +1.0
445,665 - MPMX20_00432 0.26 -0.1
445,702 - MPMX20_00432 0.29 -0.3
445,702 - MPMX20_00432 0.29 +0.4
445,760 + MPMX20_00432 0.34 +0.2
445,768 - MPMX20_00432 0.35 +1.8
445,841 + MPMX20_00432 0.41 +0.2
445,849 - MPMX20_00432 0.42 +0.1
445,849 - MPMX20_00432 0.42 -2.7
445,855 - MPMX20_00432 0.43 +0.8
445,855 - MPMX20_00432 0.43 -0.9
445,861 - MPMX20_00432 0.43 -1.5
445,861 - MPMX20_00432 0.43 +0.1
445,865 + MPMX20_00432 0.44 +0.2
445,880 + MPMX20_00432 0.45 +1.2
445,905 - MPMX20_00432 0.47 +0.4
445,910 - MPMX20_00432 0.47 +1.2
445,936 - MPMX20_00432 0.50 +2.2
445,973 + MPMX20_00432 0.53 +1.0
445,973 + MPMX20_00432 0.53 +1.7
445,973 + MPMX20_00432 0.53 -0.2
445,981 - MPMX20_00432 0.54 -1.1
445,981 - MPMX20_00432 0.54 -0.8
446,112 + MPMX20_00432 0.65 -0.6
446,135 - MPMX20_00432 0.67 +0.2
446,166 + MPMX20_00432 0.70 -3.2
446,166 + MPMX20_00432 0.70 +0.8
446,169 - MPMX20_00432 0.70 -2.6
446,174 - MPMX20_00432 0.71 -2.5
446,174 - MPMX20_00432 0.71 -2.6
446,184 - MPMX20_00432 0.71 +0.1
446,297 - MPMX20_00432 0.81 -0.4
446,302 + MPMX20_00432 0.82 +1.8
446,302 - MPMX20_00432 0.82 -2.0
446,343 + MPMX20_00432 0.85 -2.0
446,351 - MPMX20_00432 0.86 -0.1
446,420 + -0.5
446,428 - -0.1
446,452 + -0.1
446,452 + -0.1
446,452 + +2.2
446,460 - -0.1
446,460 - +1.0
446,471 + +3.5
446,533 + -2.9
446,541 - -2.2
446,541 - -1.0
446,541 - +0.3
446,541 - -0.9
446,559 + +0.3
446,771 - MPMX20_00433 0.14 -1.1
446,779 - MPMX20_00433 0.15 +0.2
446,782 + MPMX20_00433 0.16 +0.1
446,790 - MPMX20_00433 0.17 +2.9
446,790 - MPMX20_00433 0.17 -0.9
446,790 - MPMX20_00433 0.17 -0.7
446,819 + MPMX20_00433 0.20 -1.3
446,819 + MPMX20_00433 0.20 -1.5
446,819 + MPMX20_00433 0.20 +0.0
446,827 - MPMX20_00433 0.21 -3.3
446,893 + MPMX20_00433 0.28 +2.2
447,008 + MPMX20_00433 0.42 -1.9
447,009 + MPMX20_00433 0.42 -0.2
447,074 - MPMX20_00433 0.49 +2.2
447,074 - MPMX20_00433 0.49 -2.4
447,084 + MPMX20_00433 0.50 +1.9
447,086 + MPMX20_00433 0.50 -1.2
447,094 - MPMX20_00433 0.51 -1.0
447,117 - MPMX20_00433 0.54 -3.2
447,128 - MPMX20_00433 0.55 +0.6
447,147 + MPMX20_00433 0.57 +0.4
447,197 + MPMX20_00433 0.63 -2.9
447,205 + MPMX20_00433 0.64 +0.2
447,207 + MPMX20_00433 0.64 -1.0
447,246 - MPMX20_00433 0.69 -0.4
447,272 + MPMX20_00433 0.72 -0.7
447,292 + MPMX20_00433 0.74 +1.4
447,378 + MPMX20_00433 0.84 -0.2
447,424 - MPMX20_00433 0.89 +2.0
447,475 - -1.9
447,546 - -0.6
447,572 + -2.8
447,666 + MPMX20_00434 0.33 -0.6
447,666 + MPMX20_00434 0.33 -2.1
447,671 + MPMX20_00434 0.34 +0.2
447,671 + MPMX20_00434 0.34 -0.3
447,671 + MPMX20_00434 0.34 +0.2
447,671 + MPMX20_00434 0.34 -1.7
447,676 + MPMX20_00434 0.35 +2.6
447,679 - MPMX20_00434 0.36 +0.2
447,679 - MPMX20_00434 0.36 -0.2
447,681 - MPMX20_00434 0.37 +0.2
447,713 - MPMX20_00434 0.46 +0.1
447,746 - MPMX20_00434 0.55 +1.0
447,746 - MPMX20_00434 0.55 +0.3
447,747 - MPMX20_00434 0.55 -1.1
447,777 - MPMX20_00434 0.63 +1.5
447,799 - MPMX20_00434 0.69 +0.2
447,799 - MPMX20_00434 0.69 -1.9
447,799 - MPMX20_00434 0.69 -0.6
447,799 - MPMX20_00434 0.69 -0.1
447,850 + MPMX20_00434 0.84 -2.1
447,850 + MPMX20_00434 0.84 -1.1
447,903 + +0.2
447,906 - -0.4
447,910 + +0.9
447,910 + -2.6
447,915 + -0.0
447,920 + -1.0
447,920 + -1.0
447,920 + +0.2
447,922 - +2.4
447,923 - -1.0
447,928 - -0.3
447,928 - +2.7
447,928 - -2.6
447,940 + -1.0
448,137 + MPMX20_00435 0.55 +0.0
448,186 - MPMX20_00435 0.67 -0.1
448,194 + MPMX20_00435 0.69 -1.1
448,233 + MPMX20_00435 0.79 +1.1
448,233 + MPMX20_00435 0.79 -1.3
448,233 + MPMX20_00435 0.79 -3.1
448,233 + MPMX20_00435 0.79 +2.4
448,233 + MPMX20_00435 0.79 -0.0
448,241 - MPMX20_00435 0.81 -0.4
448,241 - MPMX20_00435 0.81 -1.7
448,241 - MPMX20_00435 0.81 -1.0
448,278 - +0.4
448,296 - -0.2
448,333 + -0.3
448,333 + +1.8
448,379 - -0.5
448,379 - +0.3
448,389 - -1.4
448,420 + MPMX20_00436 0.13 -2.7
448,428 - MPMX20_00436 0.14 -1.3
448,468 - MPMX20_00436 0.19 -0.4
448,501 + MPMX20_00436 0.24 -0.6
448,511 + MPMX20_00436 0.25 +1.4
448,516 + MPMX20_00436 0.26 -1.2

Or see this region's nucleotide sequence