Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00098

Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00097 and MPMX20_00098 are separated by 217 nucleotidesMPMX20_00098 and MPMX20_00099 are separated by 22 nucleotidesMPMX20_00099 and MPMX20_00100 are separated by 74 nucleotides MPMX20_00097: MPMX20_00097 - hypothetical protein, at 99,615 to 100,340 _00097 MPMX20_00098: MPMX20_00098 - 50S ribosomal protein L28, at 100,558 to 100,794 _00098 MPMX20_00099: MPMX20_00099 - 50S ribosomal protein L33, at 100,817 to 100,984 _00099 MPMX20_00100: MPMX20_00100 - Formamidopyrimidine-DNA glycosylase, at 101,059 to 101,868 _00100 Position (kb) 100 101Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 99.562 kb on - strandat 99.603 kb on - strandat 99.631 kb on + strandat 99.673 kb on + strandat 99.682 kb on + strandat 99.690 kb on - strand, within MPMX20_00097at 99.690 kb on - strand, within MPMX20_00097at 99.742 kb on - strand, within MPMX20_00097at 99.769 kb on - strand, within MPMX20_00097at 99.778 kb on - strand, within MPMX20_00097at 99.780 kb on - strand, within MPMX20_00097at 99.813 kb on - strand, within MPMX20_00097at 99.836 kb on + strand, within MPMX20_00097at 99.927 kb on - strand, within MPMX20_00097at 99.967 kb on + strand, within MPMX20_00097at 100.101 kb on + strand, within MPMX20_00097at 100.111 kb on + strand, within MPMX20_00097at 100.112 kb on + strand, within MPMX20_00097at 100.112 kb on + strand, within MPMX20_00097at 100.114 kb on - strand, within MPMX20_00097at 100.201 kb on + strand, within MPMX20_00097at 100.201 kb on + strand, within MPMX20_00097at 100.206 kb on + strand, within MPMX20_00097at 100.206 kb on + strand, within MPMX20_00097at 100.388 kb on - strandat 100.770 kb on + strand, within MPMX20_00098at 100.873 kb on + strand, within MPMX20_00099at 100.873 kb on + strand, within MPMX20_00099at 100.960 kb on + strand, within MPMX20_00099at 101.096 kb on + strandat 101.096 kb on + strandat 101.104 kb on - strandat 101.104 kb on - strandat 101.104 kb on - strandat 101.140 kb on - strand, within MPMX20_00100at 101.140 kb on - strand, within MPMX20_00100at 101.155 kb on - strand, within MPMX20_00100at 101.280 kb on + strand, within MPMX20_00100at 101.288 kb on - strand, within MPMX20_00100at 101.367 kb on + strand, within MPMX20_00100at 101.367 kb on + strand, within MPMX20_00100at 101.367 kb on + strand, within MPMX20_00100at 101.367 kb on + strand, within MPMX20_00100at 101.367 kb on + strand, within MPMX20_00100at 101.370 kb on - strand, within MPMX20_00100at 101.372 kb on + strand, within MPMX20_00100at 101.375 kb on - strand, within MPMX20_00100at 101.375 kb on - strand, within MPMX20_00100at 101.415 kb on + strand, within MPMX20_00100at 101.422 kb on + strand, within MPMX20_00100at 101.431 kb on + strand, within MPMX20_00100at 101.442 kb on + strand, within MPMX20_00100at 101.447 kb on + strand, within MPMX20_00100at 101.447 kb on + strand, within MPMX20_00100at 101.452 kb on + strand, within MPMX20_00100at 101.488 kb on + strand, within MPMX20_00100at 101.598 kb on + strand, within MPMX20_00100at 101.630 kb on + strand, within MPMX20_00100at 101.632 kb on + strand, within MPMX20_00100at 101.638 kb on - strand, within MPMX20_00100at 101.638 kb on - strand, within MPMX20_00100at 101.639 kb on + strand, within MPMX20_00100at 101.640 kb on - strand, within MPMX20_00100at 101.642 kb on - strand, within MPMX20_00100at 101.660 kb on - strand, within MPMX20_00100at 101.671 kb on + strand, within MPMX20_00100at 101.679 kb on - strand, within MPMX20_00100at 101.692 kb on - strand, within MPMX20_00100at 101.692 kb on - strand, within MPMX20_00100at 101.705 kb on + strand, within MPMX20_00100at 101.713 kb on - strand, within MPMX20_00100at 101.784 kb on + strand, within MPMX20_00100

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
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99,562 - -1.4
99,603 - +1.2
99,631 + -0.8
99,673 + -1.0
99,682 + +2.3
99,690 - MPMX20_00097 0.10 -3.2
99,690 - MPMX20_00097 0.10 +0.2
99,742 - MPMX20_00097 0.17 -2.7
99,769 - MPMX20_00097 0.21 -0.1
99,778 - MPMX20_00097 0.22 +0.4
99,780 - MPMX20_00097 0.23 +1.2
99,813 - MPMX20_00097 0.27 +2.2
99,836 + MPMX20_00097 0.30 +2.2
99,927 - MPMX20_00097 0.43 +1.2
99,967 + MPMX20_00097 0.48 -0.1
100,101 + MPMX20_00097 0.67 +0.2
100,111 + MPMX20_00097 0.68 -4.1
100,112 + MPMX20_00097 0.68 +2.0
100,112 + MPMX20_00097 0.68 +0.2
100,114 - MPMX20_00097 0.69 -0.3
100,201 + MPMX20_00097 0.81 -2.7
100,201 + MPMX20_00097 0.81 +1.2
100,206 + MPMX20_00097 0.81 -0.4
100,206 + MPMX20_00097 0.81 +1.6
100,388 - -0.0
100,770 + MPMX20_00098 0.89 -1.1
100,873 + MPMX20_00099 0.33 -0.4
100,873 + MPMX20_00099 0.33 +2.2
100,960 + MPMX20_00099 0.85 -0.1
101,096 + -2.3
101,096 + -2.2
101,104 - +1.4
101,104 - -2.3
101,104 - +0.8
101,140 - MPMX20_00100 0.10 +2.0
101,140 - MPMX20_00100 0.10 -3.1
101,155 - MPMX20_00100 0.12 -1.7
101,280 + MPMX20_00100 0.27 +1.3
101,288 - MPMX20_00100 0.28 -3.9
101,367 + MPMX20_00100 0.38 +3.0
101,367 + MPMX20_00100 0.38 +0.9
101,367 + MPMX20_00100 0.38 -0.4
101,367 + MPMX20_00100 0.38 -0.1
101,367 + MPMX20_00100 0.38 -2.0
101,370 - MPMX20_00100 0.38 -1.4
101,372 + MPMX20_00100 0.39 -1.3
101,375 - MPMX20_00100 0.39 +2.2
101,375 - MPMX20_00100 0.39 +0.7
101,415 + MPMX20_00100 0.44 -0.8
101,422 + MPMX20_00100 0.45 -0.4
101,431 + MPMX20_00100 0.46 +2.8
101,442 + MPMX20_00100 0.47 +1.2
101,447 + MPMX20_00100 0.48 +0.3
101,447 + MPMX20_00100 0.48 -0.1
101,452 + MPMX20_00100 0.49 +0.0
101,488 + MPMX20_00100 0.53 +1.8
101,598 + MPMX20_00100 0.67 +0.9
101,630 + MPMX20_00100 0.70 -1.0
101,632 + MPMX20_00100 0.71 +1.6
101,638 - MPMX20_00100 0.71 +0.2
101,638 - MPMX20_00100 0.71 +1.6
101,639 + MPMX20_00100 0.72 -0.1
101,640 - MPMX20_00100 0.72 -0.5
101,642 - MPMX20_00100 0.72 +1.0
101,660 - MPMX20_00100 0.74 +0.6
101,671 + MPMX20_00100 0.76 -2.1
101,679 - MPMX20_00100 0.77 -1.2
101,692 - MPMX20_00100 0.78 -0.6
101,692 - MPMX20_00100 0.78 -0.6
101,705 + MPMX20_00100 0.80 -2.0
101,713 - MPMX20_00100 0.81 -1.8
101,784 + MPMX20_00100 0.90 +1.3

Or see this region's nucleotide sequence