Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00034

Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00031 and MPMX20_00032 are separated by 3 nucleotidesMPMX20_00032 and MPMX20_00033 are separated by 73 nucleotidesMPMX20_00033 and MPMX20_00034 overlap by 4 nucleotidesMPMX20_00034 and MPMX20_00035 overlap by 8 nucleotides MPMX20_00031: MPMX20_00031 - Acetolactate synthase isozyme 1 large subunit, at 31,948 to 33,636 _00031 MPMX20_00032: MPMX20_00032 - Acetolactate synthase isozyme 1 small subunit, at 33,640 to 33,927 _00032 MPMX20_00033: MPMX20_00033 - Transcriptional regulatory protein UhpA, at 34,001 to 34,594 _00033 MPMX20_00034: MPMX20_00034 - Signal transduction histidine-protein kinase/phosphatase UhpB, at 34,591 to 36,096 _00034 MPMX20_00035: MPMX20_00035 - Membrane sensor protein UhpC, at 36,089 to 37,408 _00035 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 33.689 kb on + strand, within MPMX20_00032at 33.690 kb on + strand, within MPMX20_00032at 33.710 kb on + strand, within MPMX20_00032at 33.766 kb on + strand, within MPMX20_00032at 33.801 kb on + strand, within MPMX20_00032at 33.809 kb on - strand, within MPMX20_00032at 33.931 kb on + strandat 33.938 kb on + strandat 33.939 kb on - strandat 33.946 kb on - strandat 33.986 kb on + strandat 34.008 kb on + strandat 34.016 kb on - strandat 34.074 kb on - strand, within MPMX20_00033at 34.142 kb on + strand, within MPMX20_00033at 34.142 kb on + strand, within MPMX20_00033at 34.148 kb on - strand, within MPMX20_00033at 34.150 kb on - strand, within MPMX20_00033at 34.150 kb on - strand, within MPMX20_00033at 34.179 kb on + strand, within MPMX20_00033at 34.238 kb on + strand, within MPMX20_00033at 34.238 kb on + strand, within MPMX20_00033at 34.246 kb on - strand, within MPMX20_00033at 34.263 kb on + strand, within MPMX20_00033at 34.271 kb on - strand, within MPMX20_00033at 34.343 kb on + strand, within MPMX20_00033at 34.406 kb on + strand, within MPMX20_00033at 34.422 kb on - strand, within MPMX20_00033at 34.435 kb on - strand, within MPMX20_00033at 34.518 kb on + strand, within MPMX20_00033at 34.518 kb on + strand, within MPMX20_00033at 34.518 kb on + strand, within MPMX20_00033at 34.676 kb on + strandat 34.694 kb on - strandat 34.763 kb on + strand, within MPMX20_00034at 34.779 kb on + strand, within MPMX20_00034at 34.872 kb on + strand, within MPMX20_00034at 34.882 kb on + strand, within MPMX20_00034at 34.960 kb on + strand, within MPMX20_00034at 34.962 kb on + strand, within MPMX20_00034at 34.970 kb on - strand, within MPMX20_00034at 34.970 kb on - strand, within MPMX20_00034at 34.998 kb on + strand, within MPMX20_00034at 35.006 kb on + strand, within MPMX20_00034at 35.008 kb on + strand, within MPMX20_00034at 35.014 kb on - strand, within MPMX20_00034at 35.029 kb on + strand, within MPMX20_00034at 35.049 kb on - strand, within MPMX20_00034at 35.049 kb on - strand, within MPMX20_00034at 35.073 kb on + strand, within MPMX20_00034at 35.081 kb on - strand, within MPMX20_00034at 35.174 kb on + strand, within MPMX20_00034at 35.182 kb on - strand, within MPMX20_00034at 35.186 kb on + strand, within MPMX20_00034at 35.186 kb on + strand, within MPMX20_00034at 35.186 kb on + strand, within MPMX20_00034at 35.259 kb on + strand, within MPMX20_00034at 35.303 kb on - strand, within MPMX20_00034at 35.303 kb on - strand, within MPMX20_00034at 35.402 kb on + strand, within MPMX20_00034at 35.437 kb on - strand, within MPMX20_00034at 35.491 kb on - strand, within MPMX20_00034at 35.531 kb on + strand, within MPMX20_00034at 35.565 kb on + strand, within MPMX20_00034at 35.611 kb on - strand, within MPMX20_00034at 35.639 kb on + strand, within MPMX20_00034at 35.639 kb on + strand, within MPMX20_00034at 35.647 kb on - strand, within MPMX20_00034at 35.647 kb on - strand, within MPMX20_00034at 35.702 kb on + strand, within MPMX20_00034at 35.702 kb on + strand, within MPMX20_00034at 35.803 kb on - strand, within MPMX20_00034at 35.832 kb on - strand, within MPMX20_00034at 35.837 kb on - strand, within MPMX20_00034at 35.840 kb on + strand, within MPMX20_00034at 35.876 kb on + strand, within MPMX20_00034at 35.882 kb on + strand, within MPMX20_00034at 35.912 kb on + strand, within MPMX20_00034at 35.971 kb on - strandat 36.069 kb on - strandat 36.091 kb on + strandat 36.091 kb on + strandat 36.099 kb on - strandat 36.173 kb on - strandat 36.173 kb on - strandat 36.200 kb on - strandat 36.296 kb on + strand, within MPMX20_00035at 36.298 kb on + strand, within MPMX20_00035at 36.306 kb on - strand, within MPMX20_00035at 36.309 kb on + strand, within MPMX20_00035at 36.309 kb on + strand, within MPMX20_00035at 36.317 kb on - strand, within MPMX20_00035at 36.317 kb on - strand, within MPMX20_00035at 36.375 kb on + strand, within MPMX20_00035at 36.375 kb on + strand, within MPMX20_00035at 36.375 kb on + strand, within MPMX20_00035at 36.375 kb on + strand, within MPMX20_00035at 36.383 kb on - strand, within MPMX20_00035at 36.383 kb on - strand, within MPMX20_00035at 36.383 kb on - strand, within MPMX20_00035at 36.443 kb on + strand, within MPMX20_00035at 36.448 kb on + strand, within MPMX20_00035at 36.548 kb on + strand, within MPMX20_00035at 36.551 kb on + strand, within MPMX20_00035at 36.559 kb on - strand, within MPMX20_00035at 36.559 kb on - strand, within MPMX20_00035at 36.579 kb on - strand, within MPMX20_00035at 36.598 kb on + strand, within MPMX20_00035at 36.606 kb on - strand, within MPMX20_00035at 36.616 kb on + strand, within MPMX20_00035at 36.617 kb on + strand, within MPMX20_00035at 36.624 kb on - strand, within MPMX20_00035at 36.624 kb on - strand, within MPMX20_00035at 36.633 kb on + strand, within MPMX20_00035at 36.711 kb on + strand, within MPMX20_00035at 36.777 kb on + strand, within MPMX20_00035at 36.777 kb on + strand, within MPMX20_00035at 36.777 kb on + strand, within MPMX20_00035at 36.837 kb on + strand, within MPMX20_00035at 36.860 kb on - strand, within MPMX20_00035at 36.862 kb on + strand, within MPMX20_00035at 36.870 kb on - strand, within MPMX20_00035at 36.870 kb on - strand, within MPMX20_00035at 36.870 kb on - strand, within MPMX20_00035at 36.912 kb on + strand, within MPMX20_00035at 36.912 kb on - strand, within MPMX20_00035at 36.934 kb on + strand, within MPMX20_00035at 37.018 kb on - strand, within MPMX20_00035at 37.026 kb on - strand, within MPMX20_00035

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
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33,689 + MPMX20_00032 0.17 +1.0
33,690 + MPMX20_00032 0.17 -0.3
33,710 + MPMX20_00032 0.24 -1.8
33,766 + MPMX20_00032 0.44 -2.8
33,801 + MPMX20_00032 0.56 -2.7
33,809 - MPMX20_00032 0.59 +1.1
33,931 + +0.2
33,938 + -0.0
33,939 - -1.2
33,946 - +1.3
33,986 + -0.0
34,008 + +1.2
34,016 - +0.5
34,074 - MPMX20_00033 0.12 -2.4
34,142 + MPMX20_00033 0.24 +2.3
34,142 + MPMX20_00033 0.24 +1.9
34,148 - MPMX20_00033 0.25 +0.3
34,150 - MPMX20_00033 0.25 +0.6
34,150 - MPMX20_00033 0.25 -2.7
34,179 + MPMX20_00033 0.30 -0.7
34,238 + MPMX20_00033 0.40 -0.1
34,238 + MPMX20_00033 0.40 -2.3
34,246 - MPMX20_00033 0.41 +1.9
34,263 + MPMX20_00033 0.44 +2.4
34,271 - MPMX20_00033 0.45 +1.2
34,343 + MPMX20_00033 0.58 -0.6
34,406 + MPMX20_00033 0.68 +0.9
34,422 - MPMX20_00033 0.71 -1.7
34,435 - MPMX20_00033 0.73 +1.7
34,518 + MPMX20_00033 0.87 -0.5
34,518 + MPMX20_00033 0.87 +1.5
34,518 + MPMX20_00033 0.87 +0.1
34,676 + +0.9
34,694 - -2.7
34,763 + MPMX20_00034 0.11 +0.4
34,779 + MPMX20_00034 0.12 +0.5
34,872 + MPMX20_00034 0.19 +2.2
34,882 + MPMX20_00034 0.19 -1.4
34,960 + MPMX20_00034 0.25 -0.3
34,962 + MPMX20_00034 0.25 -1.1
34,970 - MPMX20_00034 0.25 +0.6
34,970 - MPMX20_00034 0.25 +0.6
34,998 + MPMX20_00034 0.27 -0.6
35,006 + MPMX20_00034 0.28 +2.2
35,008 + MPMX20_00034 0.28 -2.3
35,014 - MPMX20_00034 0.28 -2.7
35,029 + MPMX20_00034 0.29 -0.3
35,049 - MPMX20_00034 0.30 -0.4
35,049 - MPMX20_00034 0.30 -0.8
35,073 + MPMX20_00034 0.32 -0.4
35,081 - MPMX20_00034 0.33 -0.2
35,174 + MPMX20_00034 0.39 +2.5
35,182 - MPMX20_00034 0.39 -0.1
35,186 + MPMX20_00034 0.40 -0.0
35,186 + MPMX20_00034 0.40 -1.9
35,186 + MPMX20_00034 0.40 +1.2
35,259 + MPMX20_00034 0.44 +1.2
35,303 - MPMX20_00034 0.47 +3.5
35,303 - MPMX20_00034 0.47 -0.1
35,402 + MPMX20_00034 0.54 +4.7
35,437 - MPMX20_00034 0.56 -0.1
35,491 - MPMX20_00034 0.60 -0.9
35,531 + MPMX20_00034 0.62 +1.6
35,565 + MPMX20_00034 0.65 -1.5
35,611 - MPMX20_00034 0.68 -0.8
35,639 + MPMX20_00034 0.70 -3.6
35,639 + MPMX20_00034 0.70 +0.2
35,647 - MPMX20_00034 0.70 -0.6
35,647 - MPMX20_00034 0.70 +0.1
35,702 + MPMX20_00034 0.74 +3.1
35,702 + MPMX20_00034 0.74 +1.5
35,803 - MPMX20_00034 0.80 +2.3
35,832 - MPMX20_00034 0.82 +0.4
35,837 - MPMX20_00034 0.83 -0.1
35,840 + MPMX20_00034 0.83 -0.7
35,876 + MPMX20_00034 0.85 +0.3
35,882 + MPMX20_00034 0.86 -0.8
35,912 + MPMX20_00034 0.88 -0.0
35,971 - +1.0
36,069 - +1.7
36,091 + +2.2
36,091 + -1.0
36,099 - -1.4
36,173 - +1.2
36,173 - +0.1
36,200 - -1.5
36,296 + MPMX20_00035 0.16 +1.9
36,298 + MPMX20_00035 0.16 +0.2
36,306 - MPMX20_00035 0.16 +0.7
36,309 + MPMX20_00035 0.17 -2.7
36,309 + MPMX20_00035 0.17 -1.5
36,317 - MPMX20_00035 0.17 -0.7
36,317 - MPMX20_00035 0.17 -0.1
36,375 + MPMX20_00035 0.22 +0.6
36,375 + MPMX20_00035 0.22 +0.7
36,375 + MPMX20_00035 0.22 +1.0
36,375 + MPMX20_00035 0.22 -2.1
36,383 - MPMX20_00035 0.22 -1.4
36,383 - MPMX20_00035 0.22 -0.1
36,383 - MPMX20_00035 0.22 -1.0
36,443 + MPMX20_00035 0.27 +3.6
36,448 + MPMX20_00035 0.27 -1.3
36,548 + MPMX20_00035 0.35 -0.1
36,551 + MPMX20_00035 0.35 +0.6
36,559 - MPMX20_00035 0.36 -0.1
36,559 - MPMX20_00035 0.36 +0.3
36,579 - MPMX20_00035 0.37 -0.4
36,598 + MPMX20_00035 0.39 +0.7
36,606 - MPMX20_00035 0.39 -2.7
36,616 + MPMX20_00035 0.40 +0.5
36,617 + MPMX20_00035 0.40 +0.1
36,624 - MPMX20_00035 0.41 -0.8
36,624 - MPMX20_00035 0.41 -0.3
36,633 + MPMX20_00035 0.41 +0.6
36,711 + MPMX20_00035 0.47 -1.3
36,777 + MPMX20_00035 0.52 -0.1
36,777 + MPMX20_00035 0.52 -1.3
36,777 + MPMX20_00035 0.52 -0.1
36,837 + MPMX20_00035 0.57 -1.0
36,860 - MPMX20_00035 0.58 +0.6
36,862 + MPMX20_00035 0.59 +2.2
36,870 - MPMX20_00035 0.59 -0.1
36,870 - MPMX20_00035 0.59 +0.7
36,870 - MPMX20_00035 0.59 -1.1
36,912 + MPMX20_00035 0.62 -1.3
36,912 - MPMX20_00035 0.62 +1.2
36,934 + MPMX20_00035 0.64 +0.8
37,018 - MPMX20_00035 0.70 -0.9
37,026 - MPMX20_00035 0.71 -0.1

Or see this region's nucleotide sequence