Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00031 and MPMX20_00032 are separated by 3 nucleotides MPMX20_00032 and MPMX20_00033 are separated by 73 nucleotides MPMX20_00033 and MPMX20_00034 overlap by 4 nucleotides
MPMX20_00031: MPMX20_00031 - Acetolactate synthase isozyme 1 large subunit, at 31,948 to 33,636
_00031
MPMX20_00032: MPMX20_00032 - Acetolactate synthase isozyme 1 small subunit, at 33,640 to 33,927
_00032
MPMX20_00033: MPMX20_00033 - Transcriptional regulatory protein UhpA, at 34,001 to 34,594
_00033
MPMX20_00034: MPMX20_00034 - Signal transduction histidine-protein kinase/phosphatase UhpB, at 34,591 to 36,096
_00034
Position (kb) 34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 33.031 kb on - strand, within MPMX20_00031 at 33.066 kb on + strand, within MPMX20_00031 at 33.066 kb on + strand, within MPMX20_00031 at 33.066 kb on + strand, within MPMX20_00031 at 33.066 kb on + strand, within MPMX20_00031 at 33.094 kb on - strand, within MPMX20_00031 at 33.096 kb on - strand, within MPMX20_00031 at 33.116 kb on + strand, within MPMX20_00031 at 33.116 kb on + strand, within MPMX20_00031 at 33.124 kb on - strand, within MPMX20_00031 at 33.132 kb on + strand, within MPMX20_00031 at 33.140 kb on - strand, within MPMX20_00031 at 33.140 kb on - strand, within MPMX20_00031 at 33.140 kb on - strand, within MPMX20_00031 at 33.140 kb on - strand, within MPMX20_00031 at 33.142 kb on + strand, within MPMX20_00031 at 33.142 kb on + strand, within MPMX20_00031 at 33.142 kb on + strand, within MPMX20_00031 at 33.142 kb on + strand, within MPMX20_00031 at 33.142 kb on + strand, within MPMX20_00031 at 33.142 kb on + strand, within MPMX20_00031 at 33.147 kb on + strand, within MPMX20_00031 at 33.147 kb on + strand, within MPMX20_00031 at 33.150 kb on - strand, within MPMX20_00031 at 33.150 kb on - strand, within MPMX20_00031 at 33.150 kb on - strand, within MPMX20_00031 at 33.150 kb on - strand, within MPMX20_00031 at 33.150 kb on - strand, within MPMX20_00031 at 33.150 kb on - strand, within MPMX20_00031 at 33.154 kb on + strand, within MPMX20_00031 at 33.155 kb on - strand, within MPMX20_00031 at 33.198 kb on - strand, within MPMX20_00031 at 33.240 kb on + strand, within MPMX20_00031 at 33.240 kb on + strand, within MPMX20_00031 at 33.248 kb on - strand, within MPMX20_00031 at 33.404 kb on - strand, within MPMX20_00031 at 33.418 kb on + strand, within MPMX20_00031 at 33.436 kb on - strand, within MPMX20_00031 at 33.464 kb on + strand, within MPMX20_00031 at 33.689 kb on + strand, within MPMX20_00032 at 33.690 kb on + strand, within MPMX20_00032 at 33.710 kb on + strand, within MPMX20_00032 at 33.766 kb on + strand, within MPMX20_00032 at 33.801 kb on + strand, within MPMX20_00032 at 33.809 kb on - strand, within MPMX20_00032 at 33.931 kb on + strand at 33.938 kb on + strand at 33.939 kb on - strand at 33.946 kb on - strand at 33.986 kb on + strand at 34.008 kb on + strand at 34.016 kb on - strand at 34.074 kb on - strand, within MPMX20_00033 at 34.142 kb on + strand, within MPMX20_00033 at 34.142 kb on + strand, within MPMX20_00033 at 34.148 kb on - strand, within MPMX20_00033 at 34.150 kb on - strand, within MPMX20_00033 at 34.150 kb on - strand, within MPMX20_00033 at 34.179 kb on + strand, within MPMX20_00033 at 34.238 kb on + strand, within MPMX20_00033 at 34.238 kb on + strand, within MPMX20_00033 at 34.246 kb on - strand, within MPMX20_00033 at 34.263 kb on + strand, within MPMX20_00033 at 34.271 kb on - strand, within MPMX20_00033 at 34.343 kb on + strand, within MPMX20_00033 at 34.406 kb on + strand, within MPMX20_00033 at 34.422 kb on - strand, within MPMX20_00033 at 34.435 kb on - strand, within MPMX20_00033 at 34.518 kb on + strand, within MPMX20_00033 at 34.518 kb on + strand, within MPMX20_00033 at 34.518 kb on + strand, within MPMX20_00033 at 34.676 kb on + strand at 34.694 kb on - strand at 34.763 kb on + strand, within MPMX20_00034 at 34.779 kb on + strand, within MPMX20_00034 at 34.872 kb on + strand, within MPMX20_00034 at 34.882 kb on + strand, within MPMX20_00034 at 34.960 kb on + strand, within MPMX20_00034 at 34.962 kb on + strand, within MPMX20_00034 at 34.970 kb on - strand, within MPMX20_00034 at 34.970 kb on - strand, within MPMX20_00034 at 34.998 kb on + strand, within MPMX20_00034 at 35.006 kb on + strand, within MPMX20_00034 at 35.008 kb on + strand, within MPMX20_00034 at 35.014 kb on - strand, within MPMX20_00034 at 35.029 kb on + strand, within MPMX20_00034 at 35.049 kb on - strand, within MPMX20_00034 at 35.049 kb on - strand, within MPMX20_00034 at 35.073 kb on + strand, within MPMX20_00034 at 35.081 kb on - strand, within MPMX20_00034 at 35.174 kb on + strand, within MPMX20_00034 at 35.182 kb on - strand, within MPMX20_00034 at 35.186 kb on + strand, within MPMX20_00034 at 35.186 kb on + strand, within MPMX20_00034 at 35.186 kb on + strand, within MPMX20_00034 at 35.259 kb on + strand, within MPMX20_00034 at 35.303 kb on - strand, within MPMX20_00034 at 35.303 kb on - strand, within MPMX20_00034 at 35.402 kb on + strand, within MPMX20_00034 at 35.437 kb on - strand, within MPMX20_00034 at 35.491 kb on - strand, within MPMX20_00034 at 35.531 kb on + strand, within MPMX20_00034 at 35.565 kb on + strand, within MPMX20_00034
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2 remove 33,031 - MPMX20_00031 0.64 -1.1 33,066 + MPMX20_00031 0.66 -0.3 33,066 + MPMX20_00031 0.66 +0.5 33,066 + MPMX20_00031 0.66 -3.2 33,066 + MPMX20_00031 0.66 -0.7 33,094 - MPMX20_00031 0.68 +0.7 33,096 - MPMX20_00031 0.68 -2.4 33,116 + MPMX20_00031 0.69 +1.2 33,116 + MPMX20_00031 0.69 -1.0 33,124 - MPMX20_00031 0.70 -0.0 33,132 + MPMX20_00031 0.70 -1.5 33,140 - MPMX20_00031 0.71 -2.5 33,140 - MPMX20_00031 0.71 +0.4 33,140 - MPMX20_00031 0.71 +1.0 33,140 - MPMX20_00031 0.71 -0.8 33,142 + MPMX20_00031 0.71 -1.6 33,142 + MPMX20_00031 0.71 -1.2 33,142 + MPMX20_00031 0.71 -1.8 33,142 + MPMX20_00031 0.71 +1.2 33,142 + MPMX20_00031 0.71 +1.2 33,142 + MPMX20_00031 0.71 -0.4 33,147 + MPMX20_00031 0.71 +0.2 33,147 + MPMX20_00031 0.71 -1.0 33,150 - MPMX20_00031 0.71 -0.0 33,150 - MPMX20_00031 0.71 -1.5 33,150 - MPMX20_00031 0.71 -3.4 33,150 - MPMX20_00031 0.71 +2.3 33,150 - MPMX20_00031 0.71 +0.2 33,150 - MPMX20_00031 0.71 +3.5 33,154 + MPMX20_00031 0.71 +0.0 33,155 - MPMX20_00031 0.71 -0.3 33,198 - MPMX20_00031 0.74 -1.3 33,240 + MPMX20_00031 0.76 -1.6 33,240 + MPMX20_00031 0.76 -0.8 33,248 - MPMX20_00031 0.77 -2.5 33,404 - MPMX20_00031 0.86 +0.6 33,418 + MPMX20_00031 0.87 -0.6 33,436 - MPMX20_00031 0.88 +2.0 33,464 + MPMX20_00031 0.90 +3.0 33,689 + MPMX20_00032 0.17 +1.0 33,690 + MPMX20_00032 0.17 -0.3 33,710 + MPMX20_00032 0.24 -1.8 33,766 + MPMX20_00032 0.44 -2.8 33,801 + MPMX20_00032 0.56 -2.7 33,809 - MPMX20_00032 0.59 +1.1 33,931 + +0.2 33,938 + -0.0 33,939 - -1.2 33,946 - +1.3 33,986 + -0.0 34,008 + +1.2 34,016 - +0.5 34,074 - MPMX20_00033 0.12 -2.4 34,142 + MPMX20_00033 0.24 +2.3 34,142 + MPMX20_00033 0.24 +1.9 34,148 - MPMX20_00033 0.25 +0.3 34,150 - MPMX20_00033 0.25 +0.6 34,150 - MPMX20_00033 0.25 -2.7 34,179 + MPMX20_00033 0.30 -0.7 34,238 + MPMX20_00033 0.40 -0.1 34,238 + MPMX20_00033 0.40 -2.3 34,246 - MPMX20_00033 0.41 +1.9 34,263 + MPMX20_00033 0.44 +2.4 34,271 - MPMX20_00033 0.45 +1.2 34,343 + MPMX20_00033 0.58 -0.6 34,406 + MPMX20_00033 0.68 +0.9 34,422 - MPMX20_00033 0.71 -1.7 34,435 - MPMX20_00033 0.73 +1.7 34,518 + MPMX20_00033 0.87 -0.5 34,518 + MPMX20_00033 0.87 +1.5 34,518 + MPMX20_00033 0.87 +0.1 34,676 + +0.9 34,694 - -2.7 34,763 + MPMX20_00034 0.11 +0.4 34,779 + MPMX20_00034 0.12 +0.5 34,872 + MPMX20_00034 0.19 +2.2 34,882 + MPMX20_00034 0.19 -1.4 34,960 + MPMX20_00034 0.25 -0.3 34,962 + MPMX20_00034 0.25 -1.1 34,970 - MPMX20_00034 0.25 +0.6 34,970 - MPMX20_00034 0.25 +0.6 34,998 + MPMX20_00034 0.27 -0.6 35,006 + MPMX20_00034 0.28 +2.2 35,008 + MPMX20_00034 0.28 -2.3 35,014 - MPMX20_00034 0.28 -2.7 35,029 + MPMX20_00034 0.29 -0.3 35,049 - MPMX20_00034 0.30 -0.4 35,049 - MPMX20_00034 0.30 -0.8 35,073 + MPMX20_00034 0.32 -0.4 35,081 - MPMX20_00034 0.33 -0.2 35,174 + MPMX20_00034 0.39 +2.5 35,182 - MPMX20_00034 0.39 -0.1 35,186 + MPMX20_00034 0.40 -0.0 35,186 + MPMX20_00034 0.40 -1.9 35,186 + MPMX20_00034 0.40 +1.2 35,259 + MPMX20_00034 0.44 +1.2 35,303 - MPMX20_00034 0.47 +3.5 35,303 - MPMX20_00034 0.47 -0.1 35,402 + MPMX20_00034 0.54 +4.7 35,437 - MPMX20_00034 0.56 -0.1 35,491 - MPMX20_00034 0.60 -0.9 35,531 + MPMX20_00034 0.62 +1.6 35,565 + MPMX20_00034 0.65 -1.5
Or see this region's nucleotide sequence