Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00025

Experiment: M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00024 and MPMX20_00025 are separated by 204 nucleotidesMPMX20_00025 and MPMX20_00026 are separated by 85 nucleotides MPMX20_00024: MPMX20_00024 - D-serine transporter DsdX, at 24,815 to 26,152 _00024 MPMX20_00025: MPMX20_00025 - HTH-type transcriptional regulator DsdC, at 26,357 to 27,283 _00025 MPMX20_00026: MPMX20_00026 - hypothetical protein, at 27,369 to 28,457 _00026 Position (kb) 26 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 25.418 kb on - strand, within MPMX20_00024at 25.457 kb on - strand, within MPMX20_00024at 25.527 kb on + strand, within MPMX20_00024at 25.527 kb on + strand, within MPMX20_00024at 25.628 kb on - strand, within MPMX20_00024at 25.650 kb on + strand, within MPMX20_00024at 25.686 kb on - strand, within MPMX20_00024at 25.686 kb on - strand, within MPMX20_00024at 25.688 kb on + strand, within MPMX20_00024at 25.696 kb on - strand, within MPMX20_00024at 25.707 kb on + strand, within MPMX20_00024at 25.707 kb on + strand, within MPMX20_00024at 25.715 kb on - strand, within MPMX20_00024at 25.715 kb on - strand, within MPMX20_00024at 25.748 kb on - strand, within MPMX20_00024at 25.807 kb on + strand, within MPMX20_00024at 25.823 kb on - strand, within MPMX20_00024at 25.858 kb on + strand, within MPMX20_00024at 25.881 kb on + strand, within MPMX20_00024at 25.910 kb on - strand, within MPMX20_00024at 25.935 kb on - strand, within MPMX20_00024at 25.946 kb on - strand, within MPMX20_00024at 25.993 kb on + strand, within MPMX20_00024at 26.058 kb on + strandat 26.130 kb on - strandat 26.133 kb on + strandat 26.133 kb on + strandat 26.133 kb on + strandat 26.133 kb on + strandat 26.133 kb on + strandat 26.141 kb on - strandat 26.141 kb on - strandat 26.141 kb on - strandat 26.141 kb on - strandat 26.141 kb on - strandat 26.148 kb on + strandat 26.164 kb on + strandat 26.254 kb on + strandat 26.323 kb on + strandat 26.331 kb on - strandat 26.333 kb on + strandat 26.429 kb on - strandat 26.476 kb on - strand, within MPMX20_00025at 26.481 kb on + strand, within MPMX20_00025at 26.484 kb on - strand, within MPMX20_00025at 26.510 kb on - strand, within MPMX20_00025at 26.530 kb on - strand, within MPMX20_00025at 26.532 kb on - strand, within MPMX20_00025at 26.554 kb on + strand, within MPMX20_00025at 26.554 kb on + strand, within MPMX20_00025at 26.575 kb on + strand, within MPMX20_00025at 26.578 kb on + strand, within MPMX20_00025at 26.586 kb on - strand, within MPMX20_00025at 26.675 kb on + strand, within MPMX20_00025at 26.701 kb on + strand, within MPMX20_00025at 26.701 kb on + strand, within MPMX20_00025at 26.701 kb on + strand, within MPMX20_00025at 26.701 kb on + strand, within MPMX20_00025at 26.701 kb on + strand, within MPMX20_00025at 26.709 kb on - strand, within MPMX20_00025at 26.709 kb on - strand, within MPMX20_00025at 26.745 kb on - strand, within MPMX20_00025at 26.770 kb on - strand, within MPMX20_00025at 26.790 kb on - strand, within MPMX20_00025at 26.909 kb on + strand, within MPMX20_00025at 26.947 kb on + strand, within MPMX20_00025at 26.971 kb on + strand, within MPMX20_00025at 26.974 kb on - strand, within MPMX20_00025at 27.163 kb on - strand, within MPMX20_00025at 27.199 kb on + strandat 27.199 kb on + strandat 27.200 kb on + strandat 27.225 kb on + strandat 27.259 kb on - strandat 27.354 kb on + strandat 27.399 kb on - strandat 27.401 kb on - strandat 27.480 kb on + strand, within MPMX20_00026at 27.480 kb on + strand, within MPMX20_00026at 27.480 kb on + strand, within MPMX20_00026at 27.488 kb on - strand, within MPMX20_00026at 27.488 kb on - strand, within MPMX20_00026at 27.509 kb on - strand, within MPMX20_00026at 27.554 kb on + strand, within MPMX20_00026at 27.554 kb on + strand, within MPMX20_00026at 27.563 kb on - strand, within MPMX20_00026at 27.563 kb on - strand, within MPMX20_00026at 27.567 kb on + strand, within MPMX20_00026at 27.575 kb on - strand, within MPMX20_00026at 27.575 kb on - strand, within MPMX20_00026at 27.626 kb on + strand, within MPMX20_00026at 27.627 kb on + strand, within MPMX20_00026at 27.764 kb on - strand, within MPMX20_00026at 27.778 kb on + strand, within MPMX20_00026at 27.823 kb on - strand, within MPMX20_00026at 27.823 kb on - strand, within MPMX20_00026at 27.823 kb on - strand, within MPMX20_00026at 27.935 kb on - strand, within MPMX20_00026at 27.937 kb on + strand, within MPMX20_00026at 27.945 kb on - strand, within MPMX20_00026at 28.024 kb on - strand, within MPMX20_00026at 28.062 kb on + strand, within MPMX20_00026at 28.129 kb on + strand, within MPMX20_00026at 28.129 kb on - strand, within MPMX20_00026

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2
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25,418 - MPMX20_00024 0.45 +0.6
25,457 - MPMX20_00024 0.48 -1.6
25,527 + MPMX20_00024 0.53 -1.3
25,527 + MPMX20_00024 0.53 -3.4
25,628 - MPMX20_00024 0.61 -1.8
25,650 + MPMX20_00024 0.62 -1.5
25,686 - MPMX20_00024 0.65 +0.7
25,686 - MPMX20_00024 0.65 +0.5
25,688 + MPMX20_00024 0.65 -1.0
25,696 - MPMX20_00024 0.66 +1.1
25,707 + MPMX20_00024 0.67 -0.9
25,707 + MPMX20_00024 0.67 -0.7
25,715 - MPMX20_00024 0.67 +2.2
25,715 - MPMX20_00024 0.67 +0.4
25,748 - MPMX20_00024 0.70 +0.4
25,807 + MPMX20_00024 0.74 -3.3
25,823 - MPMX20_00024 0.75 -2.3
25,858 + MPMX20_00024 0.78 +1.2
25,881 + MPMX20_00024 0.80 -2.1
25,910 - MPMX20_00024 0.82 -2.1
25,935 - MPMX20_00024 0.84 +0.8
25,946 - MPMX20_00024 0.85 -1.0
25,993 + MPMX20_00024 0.88 +1.0
26,058 + -0.1
26,130 - +1.4
26,133 + +0.5
26,133 + -1.4
26,133 + -0.7
26,133 + -2.4
26,133 + -1.4
26,141 - +1.7
26,141 - +0.6
26,141 - +0.4
26,141 - -0.1
26,141 - +1.2
26,148 + +5.2
26,164 + +0.2
26,254 + -2.7
26,323 + -0.4
26,331 - -2.2
26,333 + -1.8
26,429 - -1.1
26,476 - MPMX20_00025 0.13 -2.3
26,481 + MPMX20_00025 0.13 +2.2
26,484 - MPMX20_00025 0.14 +0.2
26,510 - MPMX20_00025 0.17 -1.0
26,530 - MPMX20_00025 0.19 +0.3
26,532 - MPMX20_00025 0.19 -0.8
26,554 + MPMX20_00025 0.21 -2.3
26,554 + MPMX20_00025 0.21 +0.9
26,575 + MPMX20_00025 0.24 +0.2
26,578 + MPMX20_00025 0.24 -0.3
26,586 - MPMX20_00025 0.25 -0.2
26,675 + MPMX20_00025 0.34 +0.6
26,701 + MPMX20_00025 0.37 +1.8
26,701 + MPMX20_00025 0.37 +5.0
26,701 + MPMX20_00025 0.37 +3.9
26,701 + MPMX20_00025 0.37 -0.1
26,701 + MPMX20_00025 0.37 +2.2
26,709 - MPMX20_00025 0.38 -1.4
26,709 - MPMX20_00025 0.38 -0.4
26,745 - MPMX20_00025 0.42 +1.0
26,770 - MPMX20_00025 0.45 +0.9
26,790 - MPMX20_00025 0.47 +0.6
26,909 + MPMX20_00025 0.60 -2.9
26,947 + MPMX20_00025 0.64 +0.7
26,971 + MPMX20_00025 0.66 -0.6
26,974 - MPMX20_00025 0.67 -0.7
27,163 - MPMX20_00025 0.87 +0.5
27,199 + +1.4
27,199 + -0.6
27,200 + +1.1
27,225 + -1.4
27,259 - -2.3
27,354 + -0.8
27,399 - +0.1
27,401 - -1.4
27,480 + MPMX20_00026 0.10 -1.6
27,480 + MPMX20_00026 0.10 -2.1
27,480 + MPMX20_00026 0.10 -0.4
27,488 - MPMX20_00026 0.11 -0.1
27,488 - MPMX20_00026 0.11 +0.3
27,509 - MPMX20_00026 0.13 -0.1
27,554 + MPMX20_00026 0.17 +2.8
27,554 + MPMX20_00026 0.17 -1.7
27,563 - MPMX20_00026 0.18 -0.5
27,563 - MPMX20_00026 0.18 -1.4
27,567 + MPMX20_00026 0.18 +1.0
27,575 - MPMX20_00026 0.19 -0.1
27,575 - MPMX20_00026 0.19 -0.3
27,626 + MPMX20_00026 0.24 +1.7
27,627 + MPMX20_00026 0.24 -1.4
27,764 - MPMX20_00026 0.36 +0.2
27,778 + MPMX20_00026 0.38 -3.0
27,823 - MPMX20_00026 0.42 +0.0
27,823 - MPMX20_00026 0.42 -2.3
27,823 - MPMX20_00026 0.42 -1.9
27,935 - MPMX20_00026 0.52 -1.4
27,937 + MPMX20_00026 0.52 +3.7
27,945 - MPMX20_00026 0.53 +1.7
28,024 - MPMX20_00026 0.60 -0.6
28,062 + MPMX20_00026 0.64 -1.4
28,129 + MPMX20_00026 0.70 -0.5
28,129 - MPMX20_00026 0.70 -0.5

Or see this region's nucleotide sequence